mRNA_H-paniculata_contig2518.6851.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2518.6851.1
Unique NamemRNA_H-paniculata_contig2518.6851.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: D7FW67_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW67_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 9.500e-76
Identity = 126/218 (57.80%), Postives = 164/218 (75.23%), Query Frame = 1
Query:    1 LELALRHMRTGQRCVVRCETRFAYGPDGCPATQPGDTNLSPNTDIELLVELVEIISTTAATNMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTISEGDSPC-DSVMCEEARQLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRLSVLVKAYRSKEKAMQKRM 651
            +EL LRHMR GQ+C+VRCE RFAYG  GCPAT+ GDT+L P+TDIE+ +EL+ I+ +T   +M+P E   E +RKK VGN HF R A+KKA+R+Y +    ++E + P  DS    EAR+L+IDCGNN+AM   RLG+LEK+KEA VGVL  DP N KALFRAGQVSSLQ NF EA++AL KA ++ P SK +QAELGRL+  +K+Y++K +AMQ+ M
Sbjct:   24 VELGLRHMRVGQQCLVRCEARFAYGGLGCPATKAGDTDLPPDTDIEVRLELLSILPSTPVPDMSPEEICAEGERKKLVGNGHFERTAYKKALRAYTAAANAVAELEFPTGDSDTFREARRLRIDCGNNIAMTCYRLGELEKAKEAAVGVLEEDPTNVKALFRAGQVSSLQSNFIEARIALEKARELNPRSKAIQAELGRLAARIKSYKAKRQAMQETM 241          
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: A0A6H5JHX5_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX5_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 3.560e-73
Identity = 125/218 (57.34%), Postives = 162/218 (74.31%), Query Frame = 1
Query:    1 LELALRHMRTGQRCVVRCETRFAYGPDGCPATQPGDTNLSPNTDIELLVELVEIISTTAATNMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTISEGDSPC-DSVMCEEARQLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRLSVLVKAYRSKEKAMQKRM 651
            +EL LRHMR GQ+C+VRCE RFAYG  GCPAT+ GDT+L P+TDIE+ +ELV I+ +T   +M+P E   E +RKK VGN HF R A+KKA+R+Y +    ++E + P  DS    EAR+L+IDCGNN+AM   RLG+LEK+KEA VGVL  DP N KALFRAGQVSSLQ NF EA++AL KA ++ P SK +QAEL RL+  +K+Y++K +AM + M
Sbjct:   74 VELGLRHMRVGQQCLVRCEARFAYGGLGCPATKAGDTDLPPDTDIEVRLELVSILPSTPVPDMSPEEICAEGERKKLVGNGHFERTAYKKALRAYTAAANAVAELEFPNGDSDTFREARRLRIDCGNNIAMTCYRLGELEKAKEAAVGVLEEDPTNVKALFRAGQVSSLQSNFIEARIALEKARELNPRSKAIQAELCRLAARIKSYKAKRQAMHETM 291          
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: A0A835YRT2_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.290e-33
Identity = 87/233 (37.34%), Postives = 129/233 (55.36%), Query Frame = 1
Query:    1 LELALRHMRTGQRCVVRCETRFAYGPDGCPATQPGDTNLSPNTDIELLVELVEIISTTAATNMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTIS---------------EG-DSPCDSVMCEEARQLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRLSVLVKAYRSKEKAMQKRM 651
            +ELALRHM+ G+  +V+C  RFA+G +             PN+D+ L + LV I +      M+  +++E    KK+VGN H+  K + KA+R Y + + T                 EG D+  ++     AR L I C NNVAM +++LG+L+ + +ATV  L +DP N KAL+RAGQVSS QGNF EA+ AL+K          V+AE   L   V  Y ++++AMQ++M
Sbjct:   71 IELALRHMKPGETRLVKCVARFAWGEEEQSVAHAPP----PNSDVVLELTLVRIATAKTPAEMSADQRLEHATFKKEVGNAHYAAKHYPKALRCYQAAMDTAQSAIQQQQGEAGSGSEEGSDADANAARNSAARALLIACANNVAMVHVQLGNLKGALDATVIALEMDPNNVKALYRAGQVSSRQGNFEEARAALKKXXXXXXXXAAVRAETRELQQRVADYHARQRAMQEKM 299          
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: A0A7S2REJ1_9STRA (Peptidylprolyl isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REJ1_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.560e-33
Identity = 77/213 (36.15%), Postives = 122/213 (57.28%), Query Frame = 1
Query:    1 LELALRHMRTGQRCVVRCETRFAYGPDGCPATQPGDTNLSPNTDIELLVELVEIISTTAATNMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTISEGDSPCDSVMCEEA---RQLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRLSVLVKAYRSKE 630
            +ELALR++  G R  V C  RFA+G  G PA   G+  ++   D++ +V +  +   T    M   E++ E   K++ GN  F  + + +A R YA+ L+ +   ++  D+   + A     L +DCGNN+A+A++RL D +K+++A + VL LDP N KAL+RAG  + L G + EA+LAL +AL++ P +K V  EL  L      YR K+
Sbjct:   79 VELALRYLGPGDRARVCCAHRFAFGLSGRPAKHEGERAIAAEQDVDFIVAVSTVDPNTPVAGMALDERLREADCKRQSGNIFFLYEDWARATRCYAAALKALEGAENEEDAAEPDTAGHIHSLLVDCGNNLALAHLRLDDPKKAEDACIAVLSLDPANVKALYRAGVATKLMGRYDEARLALDRALELDPSNKAVVKELRNLQAKRLEYRQKD 291          
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: A0A7S0TEL5_9STRA (Peptidylprolyl isomerase n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TEL5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.450e-28
Identity = 73/218 (33.49%), Postives = 123/218 (56.42%), Query Frame = 1
Query:    1 LELALRHMRTGQRCVVRCETRFAYGPDGCPAT-QPGDTNLSPNTDIELLVELVEIISTTAATNMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTISEGDSPCDSVMCEEARQLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRLSVLVKAYRSKEKAMQKRM 651
            LEL LR ++ G +CVVR E+RFA+G  G PA+ + G   + P+ D+E  +E   +    A   MTP +++ + + KK++GN+HF  + ++KA  +Y  +L+ ++  +    +   EEA  + +DCGNN+  A  ++ D  K+++A   VL + P + KAL+RA Q++     + EA  AL  ALD  P +KE +     L    + YR ++  M  +M
Sbjct:   14 LELGLRQLQNGTKCVVRAESRFAFGDAGRPASAEQGTRAVPPDADVEWRIEAHRLWYKEADEAMTPRDQLVDARNKKELGNEHFHHENWRKAAANYQEILKGLNVWNFDEGTDDREEAETIYVDCGNNLVFALTKMDDWLKAEKAVCDVLCVAPEHKKALYRATQIALHLSKWQEAHAALTIALDKWPRNKEFRDLYETLRDHKRKYRDRKAKMSAKM 231          
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: A0A401RJL2_CHIPU (Peptidylprolyl isomerase n=4 Tax=Orectolobiformes TaxID=30503 RepID=A0A401RJL2_CHIPU)

HSP 1 Score: 87.4 bits (215), Expect = 1.640e-16
Identity = 64/219 (29.22%), Postives = 119/219 (54.34%), Query Frame = 1
Query:    1 LELALRHMRTGQRCVVRCETRFAYGPDGCPATQPGDTNLSPNTDIELLVELVEIISTTAATNMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTISEGDSPCDSVMCEEAR--QLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRLSVLVKAYRSKEKAMQKRM 651
            L+L ++ M   +  ++  + ++AYG  G  +++P   ++  N  + L V+L+ +  +     ++  E++    +K++ GN +F R  +  A+ SY   L  ++   S  D +  EE     +++ C NN+A A ++L   E + +++   L   P N KALFR G+V +LQG + EA L LRKA  ++P +K +QAEL ++       R+ E+AM ++M
Sbjct:  171 LDLCVQLMDQDEVALIISDAKYAYGSLG--SSEP---SVPSNATVHLEVQLLSVSDSPDLELLSGKERLLLANKKRERGNAYFLRSEYVFAISSYDIALNIVNSS-SKVDFLEGEEDELMNVKVKCLNNLAAAQLKLEHFEAALKSSNAALQHQPNNVKALFRKGKVLALQGEYTEAILVLRKAAQLEPSNKAIQAELSQVVRKQSEQRTTEQAMYRKM 383          
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: A0A7R8W4Z8_9CRUS (Peptidylprolyl isomerase n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W4Z8_9CRUS)

HSP 1 Score: 83.2 bits (204), Expect = 6.800e-15
Identity = 64/220 (29.09%), Postives = 102/220 (46.36%), Query Frame = 1
Query:   31 GQRCVVRCETRFAYGPDGCPATQPGDTNLSPNTDIELLVELVEIISTTAATNMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTISE-----GDSPCDSVMCEEARQLQIDC--------GNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRLSVLVKAYRSKEKAMQKRM 651
            G+   V    RFA+G  G       + N+ P+  +   V+L+ +        +TP E++ +   KK  GN  + R+ F  AV+ Y   L  + +     G S  +  +  E  + +I           NN+A+A M +   + +  +   VL   P N KALFR G+   L+G   EA   LR+ LDV P+ K +QAELG +   +K    K K+M ++M
Sbjct:   54 GEEAEVHIAPRFAFGSLGM-----SEVNIPPDCKVMYFVKLLGVEREPDPQTLTPEERLSKGLHKKARGNFFYQRREFSSAVQCYRRALDYLDDNPETIGSSQTEGELLREQAEERIHVLFEERLKVENNLAVAQMNMEAYDGALSSLDRVLSCQPQNVKALFRKGKCLRLKGELDEAVQVLRRGLDVSPNEKPIQAELGLVLKKLKEENEKSKSMYQKM 268          
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: UPI001C080E38 (FKBP prolyl isomerase 16 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C080E38)

HSP 1 Score: 80.9 bits (198), Expect = 3.530e-14
Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  223 KKKVGNDHFTRKAFKKAVRSYASVLQTIS----EGDSPCDSVMCEEARQLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRL 597
            K++ GN  F R+ +  A R+Y   L  ++     GD  C     EE    ++ C NN+A A ++L   +++   +  VL LDPLN KALFRAG++ S +G + EA   L+KAL ++P +K + AEL +L
Sbjct:  262 KRERGNFFFQREEYSMAARAYCMALDVLTIHTRGGDECCQVGEEEEVNDQRVKCLNNLATAQLKLEQFDEALHTSRDVLFLDPLNVKALFRAGKLLSDKGEYEEAMELLKKALKLEPTTKAIHAELSKL 390          
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: UPI001B3AFFCF (FKBP prolyl isomerase 16 n=1 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3AFFCF)

HSP 1 Score: 80.5 bits (197), Expect = 5.000e-14
Identity = 57/203 (28.08%), Postives = 107/203 (52.71%), Query Frame = 1
Query:    1 LELALRHMRTGQRCVVRCETRFAYGPDGCPATQPGDTNLSPNTDIELLVELVEIISTTAATNMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTI----SEGDSPCDSVMCEEARQLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRL 597
            LE  +  M+  +  ++  ++++AYG  G    +P     +P   +   ++L++I        +  A+++    +K++ GN HF R+ +  A R+Y   L  +    S+G         EE R  ++ C NN+A + ++L   +++   +  VL+L+P N KALFRAG++ S +G + EA   L+KAL ++P +K +  EL +L
Sbjct:  213 LEECVISMQKDEITLLMADSQYAYGLLG---REPDIPAWAP---LLYQLQLLDIREKPDPLTLPIADRIRIGNQKRERGNFHFQREEYSMAARAYCMALDVLTTRSSDGSDGGMEAEEEEVRDYRVKCLNNLATSQLKLEQYDEALHTSRDVLILEPNNVKALFRAGKLLSDKGEYKEAMEVLKKALKLEPATKAIHVELSKL 409          
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Match: FKB35_PLAF7 (Peptidyl-prolyl cis-trans isomerase FKBP35 n=23 Tax=Plasmodium (Laverania) TaxID=418107 RepID=FKB35_PLAF7)

HSP 1 Score: 77.4 bits (189), Expect = 2.550e-13
Identity = 50/196 (25.51%), Postives = 97/196 (49.49%), Query Frame = 1
Query:    4 ELALRHMRTGQRCVVRCETRFAYGPDGCPATQPGDTNLSPNTDIELLVELVEIISTTAAT----NMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTISEGDSPCDSVMCEEARQLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPKALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQ 579
            ++ +  MR  ++C+VR E+ + YG +GC  + PG++         +L+  +E++S   A     + T  EK++     K+ GN+ F +    +A+  Y   L      +   D ++ ++ + ++I C  N+A  Y +  D  K+ +    VL +D  N KAL++ G  +   G   EAK  L KA  + P++ +++
Sbjct:   79 DICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNS---------VLLFEIELLSFREAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 265          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2518.6851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW67_ECTSI9.500e-7657.80Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JHX5_9PHAE3.560e-7357.34Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835YRT2_9STRA1.290e-3337.34Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S2REJ1_9STRA2.560e-3336.15Peptidylprolyl isomerase n=1 Tax=Rhizochromulina m... [more]
A0A7S0TEL5_9STRA1.450e-2833.49Peptidylprolyl isomerase n=1 Tax=Chrysocystis frag... [more]
A0A401RJL2_CHIPU1.640e-1629.22Peptidylprolyl isomerase n=4 Tax=Orectolobiformes ... [more]
A0A7R8W4Z8_9CRUS6.800e-1529.09Peptidylprolyl isomerase n=1 Tax=Cyprideis torosa ... [more]
UPI001C080E383.530e-1437.21FKBP prolyl isomerase 16 n=2 Tax=Alosa TaxID=34772... [more]
UPI001B3AFFCF5.000e-1428.08FKBP prolyl isomerase 16 n=1 Tax=Toxotes jaculatri... [more]
FKB35_PLAF72.550e-1325.51Peptidyl-prolyl cis-trans isomerase FKBP35 n=23 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2518contigH-paniculata_contig2518:8650..9300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.7
Seed ortholog evalue1.9e-59
Seed eggNOG ortholog2880.D7FW67
Preferred nameFKBP8
KEGG koko:K09568,ko:K09571,ko:K09572,ko:K09574
KEGG Pathwayko04915,map04915
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0001654,GO:0001708,GO:0001932,GO:0001933,GO:0003002,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005783,GO:0005789,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0006464,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007389,GO:0007399,GO:0007423,GO:0008144,GO:0008150,GO:0008152,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009892,GO:0009953,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010563,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019904,GO:0021532,GO:0021904,GO:0021915,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030176,GO:0030510,GO:0030513,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031399,GO:0031400,GO:0031967,GO:0031975,GO:0031984,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0035264,GO:0035295,GO:0035556,GO:0036211,GO:0040007,GO:0042175,GO:0042325,GO:0042326,GO:0042802,GO:0042981,GO:0043009,GO:0043010,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051716,GO:0060255,GO:0060429,GO:0060548,GO:0061077,GO:0065007,GO:0071704,GO:0080090,GO:0090092,GO:0090100,GO:0090287,GO:0097159,GO:0097718,GO:0098827,GO:0140096,GO:1901363,GO:1901564,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03110
Exons1
Model size651
Cds size630
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.7877827-UTR-H-paniculata_contig2518:8649..86701622929740.7877827-UTR-H-paniculata_contig2518:8649..8670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2518 8650..8670 +
1691480991.0562236-UTR-H-paniculata_contig2518:8649..86701691480991.0562236-UTR-H-paniculata_contig2518:8649..8670Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2518 8650..8670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.8068237-CDS-H-paniculata_contig2518:8670..93001622929740.8068237-CDS-H-paniculata_contig2518:8670..9300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2518 8671..9300 +
1691480991.0672264-CDS-H-paniculata_contig2518:8670..93001691480991.0672264-CDS-H-paniculata_contig2518:8670..9300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2518 8671..9300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2518.6851.1prot_H-paniculata_contig2518.6851.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2518 8671..9300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2518.6851.1

>prot_H-paniculata_contig2518.6851.1 ID=prot_H-paniculata_contig2518.6851.1|Name=mRNA_H-paniculata_contig2518.6851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
MRTGQRCVVRCETRFAYGPDGCPATQPGDTNLSPNTDIELLVELVEIIST
TAATNMTPAEKMEEYQRKKKVGNDHFTRKAFKKAVRSYASVLQTISEGDS
PCDSVMCEEARQLQIDCGNNVAMAYMRLGDLEKSKEATVGVLVLDPLNPK
ALFRAGQVSSLQGNFAEAKLALRKALDVKPDSKEVQAELGRLSVLVKAYR
SKEKAMQKRM
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mRNA from alignment at H-paniculata_contig2518:8650..9300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2518.6851.1 ID=mRNA_H-paniculata_contig2518.6851.1|Name=mRNA_H-paniculata_contig2518.6851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=651bp|location=Sequence derived from alignment at H-paniculata_contig2518:8650..9300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGCTAGCTCTTCGGCACATGCGCACGGGTCAACGATGCGTTGTGCG CTGTGAGACAAGGTTTGCATATGGACCAGATGGCTGCCCTGCGACGCAAC CAGGAGACACAAATCTCTCTCCGAATACAGATATTGAATTGTTGGTGGAA TTGGTTGAGATTATATCCACGACTGCCGCAACCAATATGACTCCTGCAGA GAAGATGGAGGAGTATCAACGAAAAAAAAAAGTGGGCAACGACCATTTCA CTCGCAAGGCATTCAAGAAGGCGGTGCGGTCTTACGCTTCCGTACTCCAA ACCATATCGGAAGGAGACTCTCCGTGCGACTCGGTGATGTGTGAAGAGGC TCGCCAACTACAGATCGACTGCGGCAACAACGTTGCCATGGCGTACATGC GATTAGGGGACTTGGAGAAATCTAAAGAGGCCACCGTGGGCGTGCTAGTA CTAGACCCTTTAAATCCTAAAGCGCTCTTTCGTGCAGGGCAAGTGTCCTC GCTTCAGGGTAACTTCGCTGAAGCCAAGTTGGCGCTACGAAAAGCTCTTG ACGTGAAACCAGACTCAAAAGAAGTTCAGGCAGAGCTTGGGCGCCTGTCG GTGCTTGTGAAGGCGTACCGCAGCAAGGAAAAAGCGATGCAAAAAAGGAT G
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Coding sequence (CDS) from alignment at H-paniculata_contig2518:8650..9300+

>mRNA_H-paniculata_contig2518.6851.1 ID=mRNA_H-paniculata_contig2518.6851.1|Name=mRNA_H-paniculata_contig2518.6851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig2518:8650..9300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCACGGGTCAACGATGCGTTGTGCGCTGTGAGACAAGGTTTGCATA
TGGACCAGATGGCTGCCCTGCGACGCAACCAGGAGACACAAATCTCTCTC
CGAATACAGATATTGAATTGTTGGTGGAATTGGTTGAGATTATATCCACG
ACTGCCGCAACCAATATGACTCCTGCAGAGAAGATGGAGGAGTATCAACG
AAAAAAAAAAGTGGGCAACGACCATTTCACTCGCAAGGCATTCAAGAAGG
CGGTGCGGTCTTACGCTTCCGTACTCCAAACCATATCGGAAGGAGACTCT
CCGTGCGACTCGGTGATGTGTGAAGAGGCTCGCCAACTACAGATCGACTG
CGGCAACAACGTTGCCATGGCGTACATGCGATTAGGGGACTTGGAGAAAT
CTAAAGAGGCCACCGTGGGCGTGCTAGTACTAGACCCTTTAAATCCTAAA
GCGCTCTTTCGTGCAGGGCAAGTGTCCTCGCTTCAGGGTAACTTCGCTGA
AGCCAAGTTGGCGCTACGAAAAGCTCTTGACGTGAAACCAGACTCAAAAG
AAGTTCAGGCAGAGCTTGGGCGCCTGTCGGTGCTTGTGAAGGCGTACCGC
AGCAAGGAAAAAGCGATGCAAAAAAGGATGATGCGCACGGGTCAACGATG
CGTTGTGCGCTGTGAGACAAGGTTTGCATATGGACCAGATGGCTGCCCTG
CGACGCAACCAGGAGACACAAATCTCTCTCCGAATACAGATATTGAATTG
TTGGTGGAATTGGTTGAGATTATATCCACGACTGCCGCAACCAATATGAC
TCCTGCAGAGAAGATGGAGGAGTATCAACGAAAAAAAAAAGTGGGCAACG
ACCATTTCACTCGCAAGGCATTCAAGAAGGCGGTGCGGTCTTACGCTTCC
GTACTCCAAACCATATCGGAAGGAGACTCTCCGTGCGACTCGGTGATGTG
TGAAGAGGCTCGCCAACTACAGATCGACTGCGGCAACAACGTTGCCATGG
CGTACATGCGATTAGGGGACTTGGAGAAATCTAAAGAGGCCACCGTGGGC
GTGCTAGTACTAGACCCTTTAAATCCTAAAGCGCTCTTTCGTGCAGGGCA
AGTGTCCTCGCTTCAGGGTAACTTCGCTGAAGCCAAGTTGGCGCTACGAA
AAGCTCTTGACGTGAAACCAGACTCAAAAGAAGTTCAGGCAGAGCTTGGG
CGCCTGTCGGTGCTTGTGAAGGCGTACCGCAGCAAGGAAAAAGCGATGCA
AAAAAGGATG
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