mRNA_H-paniculata_contig25153.6847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25153.6847.1
Unique NamemRNA_H-paniculata_contig25153.6847.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: A0A1I9LVX1_9PHAE (50S ribosomal protein L12, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVX1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.390e-49
Identity = 92/119 (77.31%), Postives = 103/119 (86.55%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSEDSVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LIDELK LTLLE A+LVKAIEETF+VD+S  GG +MM  AGA  SED+V  E+KTEFD+SLDEVPKDK ISILK++RS TELGLKEA+EVVENTPKV+KEGLSK AAEETKK LEE GA
Sbjct:    8 LIDELKTLTLLEAAELVKAIEETFDVDASPAGGGVMMMNAGATISEDNVSDEEKTEFDVSLDEVPKDKKISILKIIRSITELGLKEAKEVVENTPKVIKEGLSKTAAEETKKLLEEAGA 126
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: A0A8F0F840_9PHAE (Ribosomal protein L12 n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0F840_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 4.680e-49
Identity = 92/119 (77.31%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSEDSVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LID LK LTLLE A+LVKAIEETF+VD+STGGGVMMMS  G+V S++   AE+KTEFD+SLDEVPKDK I ILK+VRS TELGLKEA+E+VENTPKV+KEGL+KAAAEETKKTLE+ GA
Sbjct:    8 LIDGLKTLTLLEAAELVKAIEETFDVDASTGGGVMMMSQGGSV-SDNGETAEEKTEFDISLDEVPKDKKIPILKIVRSLTELGLKEAKELVENTPKVIKEGLTKAAAEETKKTLEDAGA 125
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: A0A8E5XRI1_9PHAE (50S ribosomal protein L12, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI1_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 7.360e-46
Identity = 89/119 (74.79%), Postives = 99/119 (83.19%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSEDSVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LI+ELKNLTLLE ADLV AIEETFNVD+S GGGVMMM G     SED+   E+KTEFD+SLDEVPKDK ISILKVVR+ T+LGLKEA+EVVENTPK++KEGL K AAEE K  LEE GA
Sbjct:    8 LIEELKNLTLLEAADLVTAIEETFNVDASAGGGVMMM-GTTTSPSEDAKPTEEKTEFDISLDEVPKDKKISILKVVRTVTQLGLKEAKEVVENTPKIVKEGLLKEAAEEAKTLLEEAGA 125
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: D1GJP6_FUCVE (50S ribosomal protein L12, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJP6_FUCVE)

HSP 1 Score: 149 bits (377), Expect = 2.600e-44
Identity = 87/121 (71.90%), Postives = 103/121 (85.12%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGG--GVMMMSGAGAVKSEDSVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LI+ELK LTLLE A+LVK+IEETF+VD+ TGG  GVMMM+  GA+ +ED+   E+KTEFD+SL+EVPKDK I+ILKVVRS TELGLKEA+EVVENTPKV+KEGL K AAEE KK LE+ GA
Sbjct:    8 LIEELKTLTLLEAAELVKSIEETFDVDAPTGGASGVMMMN-PGAISTEDNNTVEEKTEFDVSLEEVPKDKKIAILKVVRSVTELGLKEAKEVVENTPKVIKEGLPKVAAEEAKKLLEDAGA 127
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: A0A8F0JYI3_9PHAE (Ribosomal protein L12 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYI3_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.550e-43
Identity = 89/121 (73.55%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSED--SVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LIDELK LTLLE ADLVKAIEETFNVD+STG GVM              S V E+KTEFDLSLDEVPKDK ISILKVVR+ TELGLKEA+EVVENTP++LKEGLSKAAAEE K  LE+ GA
Sbjct:    8 LIDELKTLTLLEAADLVKAIEETFNVDASTGSGVMXXXXXXXXXXXXXXSEVVEEKTEFDLSLDEVPKDKKISILKVVRTVTELGLKEAKEVVENTPRILKEGLSKAAAEEAKTLLEDAGA 128
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: A0A5B9RE57_9PHAE (50S ribosomal protein L12, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE57_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.270e-39
Identity = 83/119 (69.75%), Postives = 93/119 (78.15%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSEDSVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LIDELK LTLLE A+LVKAIEETF+VD+S G                   AE+KTEFD+SLDEVPKDK I ILKVVRS TELGLKEA+E+VENTPKV+KEGL+KAAAEETKKTLE+ GA
Sbjct:    8 LIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXGEA-AEEKTEFDVSLDEVPKDKKIPILKVVRSVTELGLKEAKELVENTPKVIKEGLTKAAAEETKKTLEDAGA 125
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: A0A6B7EZL5_9PHAE (50S ribosomal protein L12 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EZL5_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 7.540e-39
Identity = 80/119 (67.23%), Postives = 92/119 (77.31%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSEDSVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LIDELK LTLLE A+LVKAIEETF+VD+S G                    E+KTEF++SLDEVPKDK ISILKVVR+ TELGLKEA+EVVENTPKV++EGL+KAAAEETKK LE+ GA
Sbjct:    8 LIDELKTLTLLEAAELVKAIEETFDVDASAGXXXXXXXXXXXXXXXXXXXGEEKTEFNVSLDEVPKDKKISILKVVRAVTELGLKEAKEVVENTPKVIQEGLTKAAAEETKKLLEDAGA 126
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: A0A2I4Q2K7_9PHAE (50S ribosomal protein L12, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2K7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.160e-38
Identity = 79/119 (66.39%), Postives = 92/119 (77.31%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSEDSVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LI+ELK LTLLE A+LV  IEE FNVD+STGG             E++ VAE+KTEF LSLDEVPK+K I+ILKVVR+ TELGLKEA+EVVENTP++LKE L+K AAEE KK LEE GA
Sbjct:    8 LIEELKTLTLLEAAELVTQIEEVFNVDASTGGXXXXXXXXXXXXGEETSVAEEKTEFGLSLDEVPKEKKIAILKVVRTVTELGLKEAKEVVENTPRLLKESLTKDAAEEAKKLLEEAGA 126
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: A0A8F0FB01_9PHAE (Ribosomal protein L12 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB01_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 4.210e-38
Identity = 81/119 (68.07%), Postives = 92/119 (77.31%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSEDSVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LI+ELK LTLLE A+LVKAIEETF+VD+S GG                  AE+KTEFD+SLDEVPKDK ISILKVVRS TELGLKEA+EVVENTPKV+K GL+K+AAEE KK LE+ GA
Sbjct:    8 LIEELKTLTLLEAAELVKAIEETFDVDASAGGXXXXXXXXXXXXXXX-XXAEEKTEFDVSLDEVPKDKKISILKVVRSVTELGLKEAKEVVENTPKVIKAGLTKSAAEEAKKLLEDAGA 125
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BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Match: A0A6G6D787_ECTSI (50S ribosomal protein L12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A6G6D787_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.210e-38
Identity = 80/119 (67.23%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    1 LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSEDSVVAEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKEGLSKAAAEETKKTLEEVGA 357
            LIDELK LTLLE A+LVKAIEETF+VD+S+G               ++   E+KTEFD+SLDEVPKDK ISILK+VRS TELGLKEA+EVVENTPKV++EGL+K+AAEE KK LEE GA
Sbjct:    8 LIDELKTLTLLEAAELVKAIEETFDVDASSGXXXXXXXXXXXXXXXNAS-GEEKTEFDVSLDEVPKDKKISILKIVRSLTELGLKEAKEVVENTPKVIQEGLTKSAAEEAKKVLEEAGA 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25153.6847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVX1_9PHAE2.390e-4977.3150S ribosomal protein L12, chloroplastic n=1 Tax=P... [more]
A0A8F0F840_9PHAE4.680e-4977.31Ribosomal protein L12 n=1 Tax=Postelsia palmaeform... [more]
A0A8E5XRI1_9PHAE7.360e-4674.7950S ribosomal protein L12, chloroplastic n=1 Tax=I... [more]
D1GJP6_FUCVE2.600e-4471.9050S ribosomal protein L12, chloroplastic n=3 Tax=F... [more]
A0A8F0JYI3_9PHAE1.550e-4373.55Ribosomal protein L12 n=1 Tax=Protohalopteris sp. ... [more]
A0A5B9RE57_9PHAE1.270e-3969.7550S ribosomal protein L12, chloroplastic n=28 Tax=... [more]
A0A6B7EZL5_9PHAE7.540e-3967.2350S ribosomal protein L12 n=1 Tax=Cladosiphon okam... [more]
A0A2I4Q2K7_9PHAE2.160e-3866.3950S ribosomal protein L12, chloroplastic n=1 Tax=D... [more]
A0A8F0FB01_9PHAE4.210e-3868.07Ribosomal protein L12 n=1 Tax=Desmarestia aculeata... [more]
A0A6G6D787_ECTSI4.210e-3867.2350S ribosomal protein L12 n=1 Tax=Ectocarpus silic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25153contigH-paniculata_contig25153:1999..2355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue4.1e-30
Seed eggNOG ortholog2880.D1J716
Preferred namerpl12
KEGG koko:K02863,ko:K02935
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000311,GO:0000313,GO:0000315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009295,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009547,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0030054,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0034641,GO:0034645,GO:0042221,GO:0042651,GO:0042742,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055044,GO:0071704,GO:0098542,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0222@1,KOG1715@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929740.0542934-CDS-H-paniculata_contig25153:1998..23551622929740.0542934-CDS-H-paniculata_contig25153:1998..2355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25153 1999..2355 -
1691480990.7307756-CDS-H-paniculata_contig25153:1998..23551691480990.7307756-CDS-H-paniculata_contig25153:1998..2355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25153 1999..2355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25153.6847.1prot_H-paniculata_contig25153.6847.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25153 1999..2355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25153.6847.1

>prot_H-paniculata_contig25153.6847.1 ID=prot_H-paniculata_contig25153.6847.1|Name=mRNA_H-paniculata_contig25153.6847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
LIDELKNLTLLEVADLVKAIEETFNVDSSTGGGVMMMSGAGAVKSEDSVV
AEKKTEFDLSLDEVPKDKNISILKVVRSATELGLKEAEEVVENTPKVLKE
GLSKAAAEETKKTLEEVGA
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mRNA from alignment at H-paniculata_contig25153:1999..2355-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25153.6847.1 ID=mRNA_H-paniculata_contig25153.6847.1|Name=mRNA_H-paniculata_contig25153.6847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig25153:1999..2355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAATCGACGAATTAAAAAATTTAACATTATTAGAAGTGGCTGACTTAGT
TAAAGCCATAGAAGAAACATTTAATGTTGATTCTTCGACTGGAGGTGGGG
TTATGATGATGAGTGGTGCTGGAGCTGTAAAATCTGAAGATTCTGTTGTA
GCAGAAAAAAAAACAGAATTTGATTTAAGTTTAGATGAAGTTCCAAAAGA
TAAAAATATCTCTATTCTAAAAGTCGTTAGATCTGCAACTGAATTGGGAT
TAAAAGAAGCAGAAGAAGTTGTTGAAAATACCCCAAAAGTTTTAAAAGAA
GGATTAAGTAAAGCCGCTGCTGAAGAAACGAAAAAAACATTAGAAGAAGT
AGGTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig25153:1999..2355-

>mRNA_H-paniculata_contig25153.6847.1 ID=mRNA_H-paniculata_contig25153.6847.1|Name=mRNA_H-paniculata_contig25153.6847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig25153:1999..2355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAATCGACGAATTAAAAAATTTAACATTATTAGAAGTGGCTGACTTAGT
TAAAGCCATAGAAGAAACATTTAATGTTGATTCTTCGACTGGAGGTGGGG
TTATGATGATGAGTGGTGCTGGAGCTGTAAAATCTGAAGATTCTGTTGTA
GCAGAAAAAAAAACAGAATTTGATTTAAGTTTAGATGAAGTTCCAAAAGA
TAAAAATATCTCTATTCTAAAAGTCGTTAGATCTGCAACTGAATTGGGAT
TAAAAGAAGCAGAAGAAGTTGTTGAAAATACCCCAAAAGTTTTAAAAGAA
GGATTAAGTAAAGCCGCTGCTGAAGAAACGAAAAAAACATTAGAAGAAGT
AGGTGCTCTAATCGACGAATTAAAAAATTTAACATTATTAGAAGTGGCTG
ACTTAGTTAAAGCCATAGAAGAAACATTTAATGTTGATTCTTCGACTGGA
GGTGGGGTTATGATGATGAGTGGTGCTGGAGCTGTAAAATCTGAAGATTC
TGTTGTAGCAGAAAAAAAAACAGAATTTGATTTAAGTTTAGATGAAGTTC
CAAAAGATAAAAATATCTCTATTCTAAAAGTCGTTAGATCTGCAACTGAA
TTGGGATTAAAAGAAGCAGAAGAAGTTGTTGAAAATACCCCAAAAGTTTT
AAAAGAAGGATTAAGTAAAGCCGCTGCTGAAGAAACGAAAAAAACATTAG
AAGAAGTAGGTGCT
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