mRNA_H-paniculata_contig25146.6843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A6H5K262_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K262_9PHAE) HSP 1 Score: 288 bits (736), Expect = 3.070e-87 Identity = 157/224 (70.09%), Postives = 181/224 (80.80%), Query Frame = 1
Query: 1 KVDGADGKTAAQVIVDMATAPLAKA-AAASGGKKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
+VDGADGK AAQV+VD+ATAPLAKA AAA GGKK +R +LTRPLVLICNDQWTPALR IRA+AQVFVFR ++SP+RLVQRLKAICT+E+L VNTDALTRLAD SHLDVRSCL+TLQFVARRA+SG V NASAALLT VAEGIKDE+RDLF+ + V +G +G A D++DADV EEV+ FNDH +VL G+HE+FLGVRFNDPTL K
Sbjct: 428 EVDGADGKAAAQVLVDIATAPLAKATAAAGGGKKGKRRTSLTRPLVLICNDQWTPALRPIRAIAQVFVFRAKSSPARLVQRLKAICTSERLTVNTDALTRLADRSHLDVRSCLHTLQFVARRASSGSVTNASAALLTAVAEGIKDERRDLFEGVLWV-------------LGVRGSMA------DRKDADVFEEVQAFNDHSKVLAGVHENFLGVRFNDPTLSK 632
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A836CAX9_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX9_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.050e-37 Identity = 104/274 (37.96%), Postives = 141/274 (51.46%), Query Frame = 1
Query: 1 KVDGADGKTAAQVIVDMATAPLAKAAAASGGKKNSKRKA-------------------LTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRA--------ASGG--VRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGT--------------KRRLFVGDQGGHA---GGTCVTDKRDAD-------VLEEVECFNDHQRVLGGLHESFLGVRFNDPTL 663
++DGA+ K A I+ MA APL A+G LTRPL+LICN+Q+ P LR++R A VF FR RASP RL +RL+ IC AE + + +L L +S+ DVR+CLNTLQFVA R ASGG V + S AL+ + G+KDE+RD+FQV +VFT ++G D G GG D +D D V ++E FNDH+RVL G+HE +L +++DP+L
Sbjct: 604 EIDGAEDKAAIDAILAMAHAPLPPLRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXTHPLTRPLILICNNQYAPHLRALRPEAAVFSFR-RASPQRLARRLRVICAAEAITASQPSLLALCESTGNDVRACLNTLQFVAHRTRQAQRPLQASGGGRVHDVSMALVAALTTGMKDERRDIFQVWNAVFTAPKSGAGGXXXXXXXXXXXXXXXXXXXDAPGRTAGRGGAAALDLKDDDAPSGAAAVQRQLEQFNDHRRVLDGVHECYLQAKYSDPSL 876
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A7S3YLZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLZ4_HETAK) HSP 1 Score: 132 bits (331), Expect = 7.500e-32 Identity = 89/234 (38.03%), Postives = 131/234 (55.98%), Query Frame = 1
Query: 1 KVDG-ADGKTAAQVIVDMATAPLAKAAAASGGK-KNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRN--ASAALLTVVAEGIKDEKRDLFQVLRSVF-------TRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
+VDG A+G A +V++D+A APL +A + SGGK K LTRPL+LICND + P LR +R +A+VF F+ S RL++RL+ I EK+ + ++L L ++ D+RSCLNTLQFV + ++ +S AL + GIKD KR +F+V S++ +R A K+ D G K ++++ VE + +VL G HE +R NDPTL K
Sbjct: 98 EVDGIAEGPAAMKVLLDIAQAPL-RAGSGSGGKGKKGGLPPLTRPLILICNDLYAPQLRKLRQIAKVFSFK-ETSEDRLMKRLRVILKQEKMDFSHESLRTLCQTTSNDIRSCLNTLQFVGLEIKNNKLKGMTSSGALFRAIENGIKDGKRSIFEVWNSMYISSGKNRSRPAALQKKMKLFSDPSSTTAGGSAKAKPAEEIMDLVERGGEAAKVLAGAHEHLPLLRHNDPTLVK 329
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: UPI001CC7ED50 (chromosome transmission fidelity protein 18 homolog n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC7ED50) HSP 1 Score: 117 bits (294), Expect = 9.420e-27 Identity = 81/237 (34.18%), Postives = 124/237 (52.32%), Query Frame = 1
Query: 1 KVDGA--DGKTAAQVIVDMATA-----------PLAKAAAASGGKKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEE-VECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
++DGA DGK A +VI+ M A P KK K +L+RP++ ICND + PALR +R +A+V +F + + SR+V RLK IC E ++ ALT LA+ + D+RSCLNTLQF+ R+ + V + ++ G KD R +F V R VF +++ +R+ G C+ D D L + D+ +GG+HE+ L +R++DP + K
Sbjct: 418 EIDGALGDGKGAVEVILKMVAAEKKYEVGKGNLPQEDKPGKISSKKGRKMTSLSRPVICICNDLFAPALRPLRQVAKVHMF-VQPTVSRVVNRLKYICNKEGFRASSIALTALAEYTDCDIRSCLNTLQFLNRKKETLNVLELGSQVV-----GRKDMTRSVFDVWRGVFQKRKVKHERKSVNG---------CINTSSDFDSLHSLISNCGDYDLTMGGIHENILQLRYHDPRMQK 639
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: W5MES1_LEPOC (Chromosome transmission fidelity factor 18 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MES1_LEPOC) HSP 1 Score: 117 bits (293), Expect = 1.240e-26 Identity = 82/234 (35.04%), Postives = 124/234 (52.99%), Query Frame = 1
Query: 4 VDGADGKTAAQVIVDMATAPL-------AKAAAASGGKKNSKRK--ALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFT-----RKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTL 663
+D DG +A + V +AT A+ A +S GK K+K L RP++ ICND + PALR +R A + F P PSRLVQRL I + + +T AL L + + D+RSC+NTLQF+ R G R ++ + G+KD+ + LF V + +F RKRAG + L VG + G G + +R +L +H++V GL+++FL ++ DP+L
Sbjct: 458 IDEIDGAPSAAINVLLATLNRKESREEEAEGAPSSLGKNKRKKKESVLLRPIICICNDLYVPALRQLRQQAFLLAF-PPTQPSRLVQRLTEISKRQGMKADTGALMALCEKTDNDIRSCINTLQFLHGR----GRRQLDQRMVQSMTIGLKDQNKGLFSVWQEIFQLPRVKRKRAGQE--LSVGLEEGSGPGNANSTQRLPHILHLASSAGEHEKVAQGLYDNFLNMKLKDPSL 684
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: UPI001C4E8F5D (chromosome transmission fidelity protein 18 homolog n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4E8F5D) HSP 1 Score: 115 bits (288), Expect = 5.980e-26 Identity = 82/237 (34.60%), Postives = 126/237 (53.16%), Query Frame = 1
Query: 1 KVDGA--DGKTAAQVIVDMATAP----LAKAAAAS-------GGKKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEE-VECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
++DGA DGK A +VI+ M A + K A KK K +L+RP++ ICND + PALR +R +A+V +F + + SR+V RLK IC E ++ ALT LA+ + D+RSCLNTLQF+ ++ + V + ++ G KD R +F V R VF +K R+ G C++ D D L + D++ +GG+HE+ L +R++DP + K
Sbjct: 419 EIDGALGDGKGAVEVILKMVAAEKKYEVGKGNLAQEEKPGKISSKKGRKTTSLSRPVICICNDLFAPALRPLRQVAKVHMF-VQPTVSRVVNRLKYICNKEGFRASSIALTALAEYTDCDIRSCLNTLQFLNKKKETLNVLELGSQVV-----GRKDMTRSVFDVWRGVFQKKNVKHGRKSVNG---------CISTASDFDSLHSLISNCGDYELTMGGIHENILQLRYHDPRMQK 640
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A5D2NZ50_GOSTO (AAA domain-containing protein n=1 Tax=Gossypium tomentosum TaxID=34277 RepID=A0A5D2NZ50_GOSTO) HSP 1 Score: 114 bits (285), Expect = 1.360e-25 Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 1
Query: 1 KVDGA--DGKTAAQVIVDMATAPLAKAAAASGG--KKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEE-VECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
++DGA DGK A +VI+ M +A KK SK +LTRP++ ICND + PALR +R +A+V +F + + SR+V RLK IC E + ++ ALT LA+ + D+RSCLNTLQF+ ++ + V + S+ ++ G KD + F + R +F ++ TKR G + G + D L + D+ +L G+HE+ L +RF+DP + K
Sbjct: 379 EIDGALGDGKGAVEVILKMVSAEKKHDFGKENNAKKKGSKTASLTRPVICICNDLYAPALRPLRQIAKVHIF-VQPTVSRVVSRLKYICNREGMKTSSIALTALAEFTECDIRSCLNTLQFLQKKNETLNVMDISSQVV-----GRKDVSKSAFDIWREIFHKR---TKRDRKSNTSSGSSYG-------EFDFLHALISNRGDYDVILDGIHENILQLRFHDPVMHK 590
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A8C9ZID1_SANLU (Chromosome transmission fidelity factor 18 n=2 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9ZID1_SANLU) HSP 1 Score: 114 bits (284), Expect = 1.850e-25 Identity = 73/225 (32.44%), Postives = 117/225 (52.00%), Query Frame = 1
Query: 4 VDGADGKTAAQVIVDMATAPLAKAAAASGG-----KKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTL 663
+D DG AA + + +AT + G KK K L RP++ ICND + PALR +R A + VF P+ PSRL QRL I + + +T L L + + D+RSC+NTLQF+ RR G + S + ++ G KD+ + LF + + +F +R KR +G++ A G+ +R +L ++++V GL++++L +R DP L
Sbjct: 204 IDEIDGAPAAAINILLATLNRKEGHGGDAGTETAKKKKKKESILLRPIICICNDLYVPALRPLRQQAFLLVF-PQTQPSRLAQRLAEISLQQGMKTDTGTLMSLCEKTDNDIRSCINTLQFLNRR----GHKQLSTKTIQCISVGQKDQNKGLFHLWQQIFQLQRTKRKR---IGEEFDEAPGSGGGAQRFQHILHLASSSGEYEKVSQGLYDNYLSMRVRDPNL 420
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A484DM09_PERFV (AAA domain-containing protein n=8 Tax=Percidae TaxID=8165 RepID=A0A484DM09_PERFV) HSP 1 Score: 114 bits (284), Expect = 2.010e-25 Identity = 73/225 (32.44%), Postives = 117/225 (52.00%), Query Frame = 1
Query: 4 VDGADGKTAAQVIVDMATAPLAKAAAASGG-----KKNSKRKALTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRRLFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTL 663
+D DG AA + + +AT + G KK K L RP++ ICND + PALR +R A + VF P+ PSRL QRL I + + +T L L + + D+RSC+NTLQF+ RR G + S + ++ G KD+ + LF + + +F +R KR +G++ A G+ +R +L ++++V GL++++L +R DP L
Sbjct: 410 IDEIDGAPAAAINILLATLNRKEGHGGDAGTETAKKKKKKESILLRPIICICNDLYVPALRPLRQQAFLLVF-PQTQPSRLAQRLAEISLQQGMKTDTGTLISLCEKTDNDIRSCINTLQFLHRR----GHKQLSTKTIQCISVGQKDQNKGLFHLWQQIFQLQRTKRKR---IGEEFDEAPGSGGGAQRFQHILHLASSSGEYEKVSQGLYDNYLSMRVRDPNL 626
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Match: A0A7C9EUD3_OPUST (AAA domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EUD3_OPUST) HSP 1 Score: 113 bits (283), Expect = 2.700e-25 Identity = 81/240 (33.75%), Postives = 131/240 (54.58%), Query Frame = 1
Query: 1 KVDGA--DGKTAAQVIVDMATAP----LAKAAAAS---GGKKNSKRKA----LTRPLVLICNDQWTPALRSIRAMAQVFVFRPRASPSRLVQRLKAICTAEKLCVNTDALTRLADSSHLDVRSCLNTLQFVARRAASGGVRNASAALLTVVAEGIKDEKRDLFQVLRSVFTRKRAGTKRR----LFVGDQGGHAGGTCVTDKRDADVLEEVECFNDHQRVLGGLHESFLGVRFNDPTLCK 669
++DGA +GK A +VI+ M A K + S GKK+SK ++ L+RP++ ICND + P+LR +R +A+V VF P+ + SR+V RLK IC E L N ALT LA+ + D+RSCLNTLQF+ ++ S + S+ ++ G KD R +F + + +F +++ + L D + ++++ D DV+ + G+HE+FL + ++DP L K
Sbjct: 409 EIDGALGEGKGAVEVILKMVAAERNSYAVKETSTSEELSGKKSSKNRSKSMSLSRPVICICNDLYAPSLRPLRLVAKVHVF-PQPTVSRMVSRLKYICNKEGLKTNAIALTALAEFTECDIRSCLNTLQFLHKKKQSLDLAALSSQIV-----GQKDMTRSIFDIWKEIFQKRKVKQSAKHHLSLTTTDDASDLLYSLISNRGDCDVIHD------------GIHENFLQLHYHDPMLQK 630 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25146.6843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25146.6843.1 >prot_H-paniculata_contig25146.6843.1 ID=prot_H-paniculata_contig25146.6843.1|Name=mRNA_H-paniculata_contig25146.6843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp KVDGADGKTAAQVIVDMATAPLAKAAAASGGKKNSKRKALTRPLVLICNDback to top mRNA from alignment at H-paniculata_contig25146:399..3514+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25146.6843.1 ID=mRNA_H-paniculata_contig25146.6843.1|Name=mRNA_H-paniculata_contig25146.6843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3116bp|location=Sequence derived from alignment at H-paniculata_contig25146:399..3514+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25146:399..3514+ >mRNA_H-paniculata_contig25146.6843.1 ID=mRNA_H-paniculata_contig25146.6843.1|Name=mRNA_H-paniculata_contig25146.6843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig25146:399..3514+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |