mRNA_H-paniculata_contig25139.6840.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25139.6840.1
Unique NamemRNA_H-paniculata_contig25139.6840.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25139.6840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25139contigH-paniculata_contig25139:2778..3537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size760
Cds size759
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929739.0700452-CDS-H-paniculata_contig25139:2777..35361622929739.0700452-CDS-H-paniculata_contig25139:2777..3536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25139 2778..3536 +
1691480990.2957852-CDS-H-paniculata_contig25139:2777..35361691480990.2957852-CDS-H-paniculata_contig25139:2777..3536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25139 2778..3536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25139.6840.1prot_H-paniculata_contig25139.6840.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25139 2778..3536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25139.6840.1

>prot_H-paniculata_contig25139.6840.1 ID=prot_H-paniculata_contig25139.6840.1|Name=mRNA_H-paniculata_contig25139.6840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
PPTPPSLKLFPCSGPPAGPLHWCGPPPGPGAGPGPGLGGPIPLLAGGPCP
LCHCCSWPGGPGGRCGPRSGPCGPGGLPIKPPPGGGPIPLPPSPPGLPPP
PGGGGGPPGPPPGPDGPGPPGSPITPLPMLPPRGDPPPCHCRPGSCSGDT
PPGPGPCGPPFPGPSPPGPPCTPIPPPSPRPAPPGPPGPPGPLPCPLGPL
GGRGPHRLPTPFPLLLLTFPGAPPPLPPFCGGDPGHPGSGGGGMPPRLPC
PLP
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mRNA from alignment at H-paniculata_contig25139:2778..3537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25139.6840.1 ID=mRNA_H-paniculata_contig25139.6840.1|Name=mRNA_H-paniculata_contig25139.6840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=760bp|location=Sequence derived from alignment at H-paniculata_contig25139:2778..3537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCAACCCCACCCTCATTGAAGCTGTTTCCATGCTCGGGACCCCCAGC
AGGACCCCTCCACTGGTGTGGCCCGCCCCCCGGTCCTGGGGCGGGTCCCG
GGCCGGGTCTGGGTGGGCCCATCCCTCTGCTAGCCGGCGGTCCTTGCCCA
CTATGCCACTGCTGCTCTTGGCCAGGCGGACCCGGCGGCCGTTGTGGACC
TCGGTCCGGTCCGTGCGGTCCAGGTGGACTTCCCATTAAACCCCCCCCAG
GTGGTGGTCCCATTCCCCTGCCACCGTCCCCACCAGGCCTACCACCGCCG
CCAGGAGGCGGCGGCGGCCCGCCAGGTCCCCCGCCGGGCCCGGATGGACC
CGGTCCTCCCGGATCTCCCATTACTCCCCTGCCCATGCTCCCACCACGAG
GTGATCCACCGCCTTGCCACTGTCGTCCAGGTTCTTGTTCCGGAGATACC
CCGCCTGGACCTGGTCCATGCGGTCCGCCCTTCCCCGGTCCCAGTCCCCC
AGGACCTCCTTGCACCCCCATACCGCCACCGAGTCCTCGCCCTGCCCCCC
CAGGTCCTCCGGGCCCCCCGGGTCCGCTTCCGTGTCCACTCGGACCACTG
GGTGGTCGGGGTCCCCACCGACTCCCAACGCCGTTCCCGTTGTTATTGTT
GACGTTTCCGGGTGCTCCCCCCCCCCTCCCGCCGTTCTGCGGCGGTGACC
CAGGCCATCCCGGCAGCGGCGGAGGGGGTATGCCCCCGAGATTACCGTGC
CCATTGCCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig25139:2778..3537+

>mRNA_H-paniculata_contig25139.6840.1 ID=mRNA_H-paniculata_contig25139.6840.1|Name=mRNA_H-paniculata_contig25139.6840.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig25139:2778..3537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCAACCCCACCCTCATTGAAGCTGTTTCCATGCTCGGGACCCCCAGC
AGGACCCCTCCACTGGTGTGGCCCGCCCCCCGGTCCTGGGGCGGGTCCCG
GGCCGGGTCTGGGTGGGCCCATCCCTCTGCTAGCCGGCGGTCCTTGCCCA
CTATGCCACTGCTGCTCTTGGCCAGGCGGACCCGGCGGCCGTTGTGGACC
TCGGTCCGGTCCGTGCGGTCCAGGTGGACTTCCCATTAAACCCCCCCCAG
GTGGTGGTCCCATTCCCCTGCCACCGTCCCCACCAGGCCTACCACCGCCG
CCAGGAGGCGGCGGCGGCCCGCCAGGTCCCCCGCCGGGCCCGGATGGACC
CGGTCCTCCCGGATCTCCCATTACTCCCCTGCCCATGCTCCCACCACGAG
GTGATCCACCGCCTTGCCACTGTCGTCCAGGTTCTTGTTCCGGAGATACC
CCGCCTGGACCTGGTCCATGCGGTCCGCCCTTCCCCGGTCCCAGTCCCCC
AGGACCTCCTTGCACCCCCATACCGCCACCGAGTCCTCGCCCTGCCCCCC
CAGGTCCTCCGGGCCCCCCGGGTCCGCTTCCGTGTCCACTCGGACCACTG
GGTGGTCGGGGTCCCCACCGACTCCCAACGCCGTTCCCGTTGTTATTGTT
GACGTTTCCGGGTGCTCCCCCCCCCCTCCCGCCGTTCTGCGGCGGTGACC
CAGGCCATCCCGGCAGCGGCGGAGGGGGTATGCCCCCGAGATTACCGTGC
CCATTGCCCCCTCCAACCCCACCCTCATTGAAGCTGTTTCCATGCTCGGG
ACCCCCAGCAGGACCCCTCCACTGGTGTGGCCCGCCCCCCGGTCCTGGGG
CGGGTCCCGGGCCGGGTCTGGGTGGGCCCATCCCTCTGCTAGCCGGCGGT
CCTTGCCCACTATGCCACTGCTGCTCTTGGCCAGGCGGACCCGGCGGCCG
TTGTGGACCTCGGTCCGGTCCGTGCGGTCCAGGTGGACTTCCCATTAAAC
CCCCCCCAGGTGGTGGTCCCATTCCCCTGCCACCGTCCCCACCAGGCCTA
CCACCGCCGCCAGGAGGCGGCGGCGGCCCGCCAGGTCCCCCGCCGGGCCC
GGATGGACCCGGTCCTCCCGGATCTCCCATTACTCCCCTGCCCATGCTCC
CACCACGAGGTGATCCACCGCCTTGCCACTGTCGTCCAGGTTCTTGTTCC
GGAGATACCCCGCCTGGACCTGGTCCATGCGGTCCGCCCTTCCCCGGTCC
CAGTCCCCCAGGACCTCCTTGCACCCCCATACCGCCACCGAGTCCTCGCC
CTGCCCCCCCAGGTCCTCCGGGCCCCCCGGGTCCGCTTCCGTGTCCACTC
GGACCACTGGGTGGTCGGGGTCCCCACCGACTCCCAACGCCGTTCCCGTT
GTTATTGTTGACGTTTCCGGGTGCTCCCCCCCCCCTCCCGCCGTTCTGCG
GCGGTGACCCAGGCCATCCCGGCAGCGGCGGAGGGGGTATGCCCCCGAGA
TTACCGTGCCCATTGCCC
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