mRNA_H-paniculata_contig25136.6839.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25136.6839.1
Unique NamemRNA_H-paniculata_contig25136.6839.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25136.6839.1 vs. uniprot
Match: D7FYX1_ECTSI (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX1_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.860e-47
Identity = 101/180 (56.11%), Postives = 119/180 (66.11%), Query Frame = 1 
Query:    1 QFSRKLKEGTGGDPILPAKAFFCPGLSAELTELGVPNAQARNLCCELGRASKAALKTLSKQLRVVRGAEGSSSXXXXSSGRGVTAKRSDETTFVLQLGKNRREEDSFWGGSGGEVGFCFFGPLLRVNSAHYLKMKELFRRTRVDIIATRSNASARGNGCKWLENFHDCLFACLMRYEALQ 540
            QFSRKLKEG GGDPILPA++FF PGL AEL  LGV  AQ+RNLCCELGRASK+ALKTL KQLR V    G ++     S R V A++ D  T+VLQLGKN+                      LR+NSAHY KMKELF R+RV+  A R ++S       W+ +FHDCLF+CLMRYEALQ
Sbjct:  127 QFSRKLKEGRGGDPILPAESFFDPGLDAELQALGVHKAQSRNLCCELGRASKSALKTLKKQLRGV--VNGPAAAVSAPSKR-VAARKLDGNTYVLQLGKNK----------------------LRMNSAHYDKMKELFSRSRVEGAARRQSSSTEHPPPAWIGDFHDCLFSCLMRYEALQ 281
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BLAST of mRNA_H-paniculata_contig25136.6839.1 vs. uniprot
Match: A0A6H5LQ06_9PHAE (PCIF1_WW domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ06_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.600e-35
Identity = 85/180 (47.22%), Postives = 98/180 (54.44%), Query Frame = 1 
Query:    1 QFSRKLKEGTGGDPILPAKAFFCPGLSAELTELGVPNAQARNLCCELGRASKAALKTLSKQLRVVRGAEGSSSXXXXSSGRGVTAKRSDETTFVLQLGKNRREEDSFWGGSGGEVGFCFFGPLLRVNSAHYLKMKELFRRTRVDIIATRSNASARGNGCKWLENFHDCLFACLMRYEALQ 540
            QFSRKLKEG GGDPILPA++FF PGL AEL  LGV  AQ+RNLCCELGRASK+ALKTL KQ+                                             W              LLR+NSAHY KMKELF R+RV+  A   ++S       W+ +FHDCLF+CLMRYEALQ
Sbjct:  237 QFSRKLKEGRGGDPILPAESFFDPGLDAELQALGVHKAQSRNLCCELGRASKSALKTLKKQVAA---------------------------------------SMPVW--------------LLRMNSAHYDKMKELFSRSRVEGAARWQSSSTEHPPPAWIGDFHDCLFSCLMRYEALQ 363
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25136.6839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYX1_ECTSI4.860e-4756.11PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5LQ06_9PHAE1.600e-3547.22PCIF1_WW domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25136contigH-paniculata_contig25136:775..3526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue7e-42
Seed eggNOG ortholog2880.D7FYX1
Preferred namePCIF1
KEGG koko:K17584
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0007275,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0008150,GO:0009888,GO:0009892,GO:0009953,GO:0010563,GO:0010921,GO:0010923,GO:0015630,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035220,GO:0035222,GO:0035295,GO:0035303,GO:0035305,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044092,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0045936,GO:0048190,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0060429,GO:0065007,GO:0065009,GO:0070013
EggNOG free text desc.negative regulation of phosphatase activity
EggNOG OGs28P6D@1,2QVT7@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons4
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25136.6839.1prot_H-paniculata_contig25136.6839.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25136 775..3526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.9993224-CDS-H-paniculata_contig25136:774..8911622929738.9993224-CDS-H-paniculata_contig25136:774..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25136 775..891 +
1691480990.2630644-CDS-H-paniculata_contig25136:774..8911691480990.2630644-CDS-H-paniculata_contig25136:774..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25136 775..891 +
1622929739.011743-CDS-H-paniculata_contig25136:2401..26521622929739.011743-CDS-H-paniculata_contig25136:2401..2652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25136 2402..2652 +
1691480990.273196-CDS-H-paniculata_contig25136:2401..26521691480990.273196-CDS-H-paniculata_contig25136:2401..2652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25136 2402..2652 +
1622929739.025162-CDS-H-paniculata_contig25136:3297..34031622929739.025162-CDS-H-paniculata_contig25136:3297..3403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25136 3298..3403 +
1691480990.2806277-CDS-H-paniculata_contig25136:3297..34031691480990.2806277-CDS-H-paniculata_contig25136:3297..3403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25136 3298..3403 +
1622929739.0343046-CDS-H-paniculata_contig25136:3460..35261622929739.0343046-CDS-H-paniculata_contig25136:3460..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25136 3461..3526 +
1691480990.2880929-CDS-H-paniculata_contig25136:3460..35261691480990.2880929-CDS-H-paniculata_contig25136:3460..3526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25136 3461..3526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25136.6839.1

>prot_H-paniculata_contig25136.6839.1 ID=prot_H-paniculata_contig25136.6839.1|Name=mRNA_H-paniculata_contig25136.6839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
QFSRKLKEGTGGDPILPAKAFFCPGLSAELTELGVPNAQARNLCCELGRA
SKAALKTLSKQLRVVRGAEGSSSSSTSSSGRGVTAKRSDETTFVLQLGKN
RREEDSFWGGSGGEVGFCFFGPLLRVNSAHYLKMKELFRRTRVDIIATRS
NASARGNGCKWLENFHDCLFACLMRYEALQ
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mRNA from alignment at H-paniculata_contig25136:775..3526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25136.6839.1 ID=mRNA_H-paniculata_contig25136.6839.1|Name=mRNA_H-paniculata_contig25136.6839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2752bp|location=Sequence derived from alignment at H-paniculata_contig25136:775..3526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTTAGCCGTAAGCTCAAGGAAGGGACCGGGGGAGATCCTATTTTGCC
GGCGAAGGCGTTTTTCTGTCCAGGTCTATCAGCTGAGTTAACGGAATTGG
GAGTACCGAACGCACAGGTACGACGACGACGACGACGACGACGTAAGGTG
AAATAGTACCGTTCATCTGTGATCCAAACTTCAAAGGGGCTCCATTTTTA
TAATACCAGATTTTTTTCACGTTTTTTTTTACTTTTTTTTTACTTTTTTT
TTTTTGTACTTTTATGTATTTTTATGTATTTTTATTTTAGGGTACAAGAA
ACAGACGTGGTTCATTTGTTGTTTGTTTTTGCATATTGACTGTTTCGCCT
TGGTCCACCAACCAACCAAGCTCTGCCGTCCAGTTCCATCCTGTCCGCGA
TGGTTATTGAGTGAGTTGCCTCTGCCACGCGATCGCATCCAGGCATCAAT
ATACCCATAAACCATGAATGCCTATTGCCTTAAAAAACACCTTATAAATT
TCAACCTTTCAACCTTTCAACCTTCTCCGGAAATGACACGGAGGCAAGCC
CGTATTAGAGATGATCGTTCCTGTGTACGTATGTATTTTGTATTAAGTGA
ATAATTAATGCACCAAACGTGATGGCTTGTCGTCCGGATCGTTAGCATCG
TCCTCGTTGTTGTCACGGTGAGATCTCATACAGTGAGTGTGTTTGTCTTA
TCGAGGAGTATGTGTTGCAAAAACCCCCCCGAAAATTGGGAGAGGAAACA
AACGAAAAACAGTTGGTGCAAGGAAAAGAGGGTTTGTGTTTTTTGGTCGA
TTTTTTTTGTTTGTTGGAAGTGGAATTCTGTCATTGGTCAACGGACGAAG
AGACCGCGCAAGAGACCAAATCAATATTCAAAGAGATCTTCTCTTCCAAA
ACGTTTCGGTTTCCTGTCCCTTTTTTTTTTTTTTTTTTTTTTTCACATGT
TTCCTCGATAATACAATGTTTCAGTGAAAGAAAGGTATATATAACCGCTG
GCCGCCGGCCTATAGGATCGCGAAGGATAGATCTGAGCTAATGGTCCGCT
GGCCCTCCGACCTGCTAACTAACCTATTAAGAGTATGTTGTATTATAGGT
GATTTTACGAGCCCTCACGGAAAGACGACGTTTTTTTTTTCGATGTGATT
TTAACTGTCGAGGATGTGTAGTCAAACGGTCTCTCACTAATGGATGAAGG
CAAGCCAAACTCGAGAACAACCGGTCCCCTCGTGCAATTGGTTGTGAGGC
TGTTGACGAGTATTGTTATTCGTCGTTATGATGACTCTTGTGACCCTGGA
TGACCTCTCTCGTCATTTATGAAAATATCCACGATGACTTGAGCCCCGGT
GGCACAACGACTCGCTAAGCTCGCGTGCAGTATGGTGCAAATGCCCATAT
AAAAATAAATAAATCGTTCTTTATACGTTACTTGAGTACAGAATTGAATA
TATGTTCCGGAAATGACGATCGTCACCGTCGTCATCACCGTAGCGTAGTA
ATTACGTACGTAATCAAATGAATGAAGGCTTCAAGTCAAAAAAGCATGTA
ACTAGGCAGCCAGTTACCACCTAAACAATCGCCTTCATTCGACACACGAA
CTGCATGCAACGCAACGCAACGCACAGGCGCGCAACTTGTGTTGTGAGCT
AGGGCGAGCATCTAAGGCCGCTCTCAAGACCCTCAGCAAGCAGTTGCGCG
TCGTGCGCGGAGCGGAGGGCTCGTCGTCGTCGTCGACATCATCCAGCGGG
AGGGGTGTGACGGCCAAGAGGTCCGACGAAACGACGTTCGTGCTGCAGCT
CGGAAAGAATAGGCGAGAGGAAGATAGCTTTTGGGGGGGGAGCGGGGGGG
AGGTTGGCTTCTGTTTTTTTGGTCCTCTGTCTCTCTTTTTCCCTCCCTCC
CTCCCTCTTGAATTTATTGTCTTGAATTTATTGAGCCATTCATAGTTGAT
GCCCCGCGATCAGTGGGCTGACTCTCGTCGTAAATTTACTTGATCCCGGG
GTAATTATTGATGCCCTGAACCAAGGGGTTTTCGATTTTTGACCGTGTAG
TAATGATCGGCTTGCGGTTGCTGCGAGGTCAAGGTTTCAGCGCGAACGGG
AACCCCACCCGAACTCTTGAGGATTTGTGCATATATCCATCTGGTATAGC
AGTCTTACGGGGTACGTCTAAAGTAGGCGTCTTCTTTTCGACAAACACGT
TTTTTTTTTTTTCTTGGTCGAAGAAAAGTAAGAAGAGCTCTCTGAACTCT
GTCTAACGAGTTAAGGGTTCTATCTGATGACAGATAGATGATCTCGCCGA
ACGTGCCCCTCGCGGGTCGTCATCCAAGAATTTGAAAACGAACTCTATTT
GCCTTTGCTTCTGATGACGGTAACGATGCTGATGCTGATGATGAGAAAGA
GGATAACAATGTTCGGAATCCCGTTTATTTCACTTAATTTATTTTTTATT
TTTTATGTCTTTTGTATTTTTCTCATATGTCGTTTTTTTTTTTTTTCACC
CTTGAATTGTGCCCAACAAAAAGGCTGCGTGTAAATAGCGCACACTACTT
GAAAATGAAGGAGCTCTTTCGCCGGACGCGTGTCGATATCATAGCGACGC
GCAGCAACGCCAGCGCTCGTGGCAACGGAGTGGTGCGGAGTTTGACGACG
GCGACGACGACGACAATGTTGAAGAGCGATAGGGAGTGCAAGTGGCTCGA
GAACTTCCACGACTGTCTGTTTGCGTGCCTGATGCGGTACGAGGCATTAC
AG
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Coding sequence (CDS) from alignment at H-paniculata_contig25136:775..3526+

>mRNA_H-paniculata_contig25136.6839.1 ID=mRNA_H-paniculata_contig25136.6839.1|Name=mRNA_H-paniculata_contig25136.6839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig25136:775..3526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTTAGCCGTAAGCTCAAGGAAGGGACCGGGGGAGATCCTATTTTGCC
GGCGAAGGCGTTTTTCTGTCCAGGTCTATCAGCTGAGTTAACGGAATTGG
GAGTACCGAACGCACAGCAGTTTAGCCGTAAGCTCAAGGAAGGGACCGGG
GGAGATCCTATTTTGCCGGCGAAGGCGTTTTTCTGTCCAGGTCTATCAGC
TGAGTTAACGGAATTGGGAGTACCGAACGCACAGGCGCGCAACTTGTGTT
GTGAGCTAGGGCGAGCATCTAAGGCCGCTCTCAAGACCCTCAGCAAGCAG
TTGCGCGTCGTGCGCGGAGCGGAGGGCTCGTCGTCGTCGTCGACATCATC
CAGCGGGAGGGGTGTGACGGCCAAGAGGTCCGACGAAACGACGTTCGTGC
TGCAGCTCGGAAAGAATAGGCGAGAGGAAGATAGCTTTTGGGGGGGGAGC
GGGGGGGAGGTTGGCTTCTGTTTTTTTGGTCCTCTGCGCGCAACTTGTGT
TGTGAGCTAGGGCGAGCATCTAAGGCCGCTCTCAAGACCCTCAGCAAGCA
GTTGCGCGTCGTGCGCGGAGCGGAGGGCTCGTCGTCGTCGTCGACATCAT
CCAGCGGGAGGGGTGTGACGGCCAAGAGGTCCGACGAAACGACGTTCGTG
CTGCAGCTCGGAAAGAATAGGCGAGAGGAAGATAGCTTTTGGGGGGGGAG
CGGGGGGGAGGTTGGCTTCTGTTTTTTTGGTCCTCTGCTGCGTGTAAATA
GCGCACACTACTTGAAAATGAAGGAGCTCTTTCGCCGGACGCGTGTCGAT
ATCATAGCGACGCGCAGCAACGCCAGCGCTCGTGGCAACGGAGCTGCGTG
TAAATAGCGCACACTACTTGAAAATGAAGGAGCTCTTTCGCCGGACGCGT
GTCGATATCATAGCGACGCGCAGCAACGCCAGCGCTCGTGGCAACGGATG
CAAGTGGCTCGAGAACTTCCACGACTGTCTGTTTGCGTGCCTGATGCGGT
ACGAGGCATTACAGTGCAAGTGGCTCGAGAACTTCCACGACTGTCTGTTT
GCGTGCCTGATGCGGTACGAGGCATTACAG
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