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Homology
BLAST of mRNA_H-paniculata_contig2513.6836.1 vs. uniprot
Match: D8LES7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES7_ECTSI) HSP 1 Score: 182 bits (462), Expect = 4.910e-54 Identity = 86/133 (64.66%), Postives = 108/133 (81.20%), Query Frame = 2
Query: 305 AGGSNIAAGEGPAYIVCALPYRNDAVGREVEWGLDTALAIVEEAVDAFDPPRIEARPVRGSWPAELQERAKSVDTFELLRSVYFTRAGNSLPEIHRSVPKIEADFYMWLACRKQQWRQHRSNKRARRQLTPEE 703
A +NIA+G+GPAY++CALPYR DA +WGLDTALAIVEEAV+AFDP R++ARP R SWP ELQ++AK++DT EL+RS YF R +SLP++ VPKIE +FYMWL+ RKQQWR+HR +KR R+LTPEE
Sbjct: 4 AVATNIASGQGPAYVLCALPYRTDA--EREDWGLDTALAIVEEAVEAFDPQRMQARPARTSWPPELQDKAKALDTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKRVGRKLTPEE 134
BLAST of mRNA_H-paniculata_contig2513.6836.1 vs. uniprot
Match: A0A6H5KM78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM78_9PHAE) HSP 1 Score: 183 bits (464), Expect = 2.860e-52 Identity = 87/133 (65.41%), Postives = 108/133 (81.20%), Query Frame = 2
Query: 305 AGGSNIAAGEGPAYIVCALPYRNDAVGREVEWGLDTALAIVEEAVDAFDPPRIEARPVRGSWPAELQERAKSVDTFELLRSVYFTRAGNSLPEIHRSVPKIEADFYMWLACRKQQWRQHRSNKRARRQLTPEE 703
A +NI +GEGPAY++CALPYR DA +WGLDTALAIVEEAV+AFDP R++ARP R SWP ELQ++AK++DT EL+RS YF R +SLP++ VPKIE +FYMWL+ RKQQWR+HR +KRA R+LTPEE
Sbjct: 4 AVATNITSGEGPAYVLCALPYRTDA--EREDWGLDTALAIVEEAVEAFDPQRMKARPARTSWPPELQDKAKALDTIELMRSAYFARGSSSLPDVSEPVPKIEDNFYMWLSLRKQQWRKHRRDKRAGRKLTPEE 134
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-21_005420.1 |
| Exons | 4 |
| Model size | 974 |
| Cds size | 645 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2513.6836.1 >prot_H-paniculata_contig2513.6836.1 ID=prot_H-paniculata_contig2513.6836.1|Name=mRNA_H-paniculata_contig2513.6836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MAGGSNIAAGEGPAYIVCALPYRNDAVGREVEWGLDTALAIVEEAVDAFD
PPRIEARPVRGSWPAELQERAKSVDTFELLRSVYFTRAGNSLPEIHRSVP
KIEADFYMWLACRKQQWRQHRSNKRARRQLTPEEDFPRWLQQRKWHWKTS
KMERESRNTPPLEVDFYRWLAERKKVWRLQRMTKKHSAGKGLLAVRNGGA
GGHHVGAATPNPTT* back to topmRNA from alignment at H-paniculata_contig2513:6800..11081- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2513.6836.1 ID=mRNA_H-paniculata_contig2513.6836.1|Name=mRNA_H-paniculata_contig2513.6836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4282bp|location=Sequence derived from alignment at H-paniculata_contig2513:6800..11081- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGACATGTAGTCATTATATACTATATGTCGGGCCGTAGCTATTGTTG
TTTTGGGTAAGGCTTGGTAATTATCTGTGCTCAGGTTAGGTGGGCGTATG
ATCTCCGAATAGGGTGAGATTCCTTCCTCACAATTGATTCGGGTGTATTC
CAAAAGTAAGTACGTGAAACTAAGTGTAAAATAGAGATCCCGTCAAGTTA
CTGTGGGGAAGCTGCCGACGATATCGAGGCTCGCCCGAAGAGCTCAGCTA
ATCCCAGAGGTGAGTCCATACTAGCCAACCGCACAGCAGTAGAAGATAAT
TAGGGATGCTACAGCTGTAGCAAAAATGCTCCAAGACCTGTGTCGTTGTC
TAACAGATCACAGTATAGTCCATGTCGTCTAAATGGGAGTCCGGATATCA
AGTTGCAGACAGATGGTAGAGTGTCTATTGTGCTCTCTGCAGATCTAGCG
GACCATCGTAAAGTAAACCGCCCACAACTTGCATATCATATGCTATACTG
ACTACTATGCCTCATCCTCGAAGACTACTTGATGTACAGATACTACGACG
AAGCTAGGATACAGGATGGCGGGTGGTAGCAACATCGCGGCAGGGGAGGG
GCCAGCATACATTGTCTGTGCGCTCCCGTATCGTAACGACGCTGTCGGTC
GAGAGGTGGAATGGGGACTAGACACGGCGTTGGCCATCGTAGAGGAGGCT
GTGGATGCGTTCGATCCGCCGAGGATAGAGGCCCGGCCTGTGCGGGGTAG
CTGGCCGGCAGAGCTGCAGGAGAGGGCAAAGGTATTAACTTTACGAATAG
CGTATATGACCGGAACTCGTATAATGGTGACGTAGTAACCCGGAGAAGAC
CTACCTCTCTATAGTGCATGTAACGACCACTTCGGGAATAATGGAGCAGT
TACGCGGTACAAAACAATAGTGAGCAGTCTAACGGTTTAGGCCACTCATG
GTTTTGATGCTTTACTTGATGTCAAAAGAGCTGCGGCATCTGTAAGAGAA
GAAGCAAGAACACGTGCTTTATAGTAATTCATCATGAATATTTGTGGAAA
AATTGTTTCCAAAAACATCAACACTAAGAATGAATCAACTTCAATGGCTA
TTTAGACTACTTCTTATGGGACATGGAAATTTTTGAAAAAGTGGATATTT
TTAATTATCCAAGTGAAAATCCCTTTGACCACATCTTATGGGGGAAGAAA
CTGATATATTTGATTAAATATCTAAGTCGACGAACTTTTGCTCCATCTGG
GGGAAAAGTTTTGTAATTATCCAAGTGGGATTTTTGTAACTTGGATTATT
TTAAACTGAAAAACATGACGAAAGGCACAAGCGGCATCGTCAGAAAACAC
GGCAGTATCTATCTGATTTTCCAAGAGCAAAAACTGTGAGGTTCAACAGG
TCACCCTCGCCACACCTCACACACAAGCTACCCTTGTCGCAGTACATACA
CACTCTTGGGAATGGTGACTAGCAGATAGGTAACGCTTGGTAGAACTTGA
GGCACTTCAACGTTAACTTTTGACCGCCGTAGTAGTTATAAGCGCGTTCC
ATCGCCCATTTTACCATAGGGCCCGGTTCGATCAGCAGTTCGTTTTCAAA
CTGGGGCTCATCACCCCCTGTTACGACACCCTCTGGAAATGTTGACATCG
TGCCTACCCCTGACCTCTATCTCGTTTGCTAACCACAACCGGCGTTTTCC
CCGCGTTTTTCAGAATTAAGGATAATGACTTTACTCTGTTCTCCTCCCAG
CAGCTATAGCCTGTCCAAGTTTGGACACCTTGAAAAATCACAGTTTCCCA
TAAGAAGTGGTTCTTCGATTTTTGAATTGGATATTTTTCACTTGGATAAT
TGGAAATATCAACAAAAAAATTCAATTATCCAAGTTCCATAACAAGTGTC
CTTACCTTTAGTAAATGTTGAAAGTAAAAATCAACTAATTTTCATATGCC
TGGGATACATAGCTCAGCAATTTCCATCGGCTTCAGTCTTGCAAGTGTAC
AACAACAATGCCAACGCTATTGCAGCTCAGCTGCAGGCAGTAGCCCTCTA
ACAATGTAGACAGCTACATTATCGACAAAAATAGATATGACAACCCTGAG
CTACAGACAGTACAAGGAAGCAATACTGACTTATTTAACACCTCTACATT
GCTCGTGAGGTCGGCGGCCGCATGTAATTTCACAAGCAGAGATCGATACG
TTGAGCGAGCGGACAACGTACTGCAACTGTTGTATTTGGGCTTTCCATTC
ATAGGCGCGTAGCCTGAGTCTCCCAGAGAATGAGGTGCTTTGATTGAGTG
AAATCGATCCGATACCGGCCAAGCGAAAACAAAATTCGTGAGAGTTTGCC
GCCATTTTTCCCCTCAAATCGTAGTTGACAACGTTTGGACATTCTATCAC
TCCGAGCAGACACGTTCTGAGGTTTTACCTTATGTGGCATATAGTAAAAC
GGCGAATATGTCAATCATATACTATCATTTCAGGTGTTTTCCCAGCGTTC
TGGGTCAGAGAAATGACCCACTTCGTTAAAAGAAAAAGTGGAAAATCGTA
ACGATGCCCTTGACTCGCACATCGTCAGTTCCAAAAGGGTTACATTCACA
TTTTTTTTTGGCACGTGAACATGGTTGCTTGTGATTTAGAACAGAAGTCT
ACTCTCAATTTTTTTCAACGCCATACCTCGACGACCCCGAGCGTTTGTAG
GGCAAGAACGAACCCACCGAATAGCAGCACTAGCTGTAGGCAGCAGTTTC
TGTGCGAATGCCTCTTTGGGTTTGTATGTTTAACGGCAGCATAGGTGCCG
GATGGCGAGACACCTGTCCTATGTCTCTGTGATTTTACGAAGGGAGTTTA
ATGTGTTGAGAGAATACCAACGTTCCTGCAAGGAGAAACTGCTCTTGGAA
GCGATACTTCCTGTGGCATATGGGTCGCAGCACTTGGAGCTCATCCAGCT
CGGCTCTTTTTCTCGACCAAGTAATCGCTCTTCATAGACCACCGAAAGTT
GAGCCTCGATGCCGAAGACGTGACGAAGAGAGAACACCGCGTTTGCAAGC
CTTCCGCTACGATAGTGTCGACGTGTTCGTTGCTCATCAGAGCCTTCCAA
CGCATACTAAAATGTAGTCGCTTACAGTGCACAGTTTCTCAGCATCCTTT
TTGTTGATATTTTTGATTTCCCATCAACCAAGTAACAAGAAAAATCAACA
TCTCTCGTCGTACCCATTGTCCCCACACCCCGGATCCACAGAGCGTGGAC
ACGTTCGAGCTACTGCGATCGGTGTACTTCACGCGAGCGGGCAACAGCCT
GCCCGAGATCCACCGATCCGTGCCCAAGATAGAGGCGGACTTCTACATGT
GGTTGGCGTGTCGTAAGCAGCAGTGGCGCCAACACAGGTCGAACAAGAGG
GCGCGGCGACAACTCACGCCAGAGGAAGACTTCCCCAGGCAAAAAACAGT
AGCGGAAAACTTCTCACTCGTCTGCGTGTATGCAATTTGTGTCTGTTCAG
AACTAGCCGTAAGAACTAACCAGGGGAGGGGGGGAGGGCAGGAGGTTCAA
GAAGCTATTCCGGGCTTTTCTCTCTTGCGGTGCCCAATGTCAAACCGTAT
GCAGCAGGTCTTGATCATTTTCAACTACATGGTTCACGTAACTCACCTTG
AGCGAGTGGAACTACTGCCCTCACCGTGTGATGATAATACAGGGCCAGCA
CTGAGGCATGACATTCTCACCTTCGGACTGGGGTGTTCCTACAGAGAAGT
AGAGAACTGAGCCGTGACGATTAAAAAGAAAAAAAAAAACTTGTTGATTT
GGTACTCATCGTGCCCCGGGCGAAATAGTTATTATCGCAAGGAAGTAAAG
AAAAGTTAGCACATTTATCTTGCCCCTCCATCGTCCGTACATCACATCAC
GTCAATATACATGAACTCGGTGTCCTTCCTAGCGTGTCCCACCTCTTCAC
CTCGTCTCTCTCTCCCCCCCCCCCCCCTCCCACCCCCCTATTTCCTATTT
ACGCGTGCCTCCGCTCATTCAGGTGGTTGCAGCAGCGCAAGTGGCATTGG
AAAACCAGCAAAATGGAGCGAGAGTCCCGCAACACTCCTCCGCTCGAGGT
GGACTTCTATCGATGGTTGGCAGAGCGAAAAAAAGTGTGGCGCTTGCAGA
GGATGACCAAGAAACACTCGGCGGGAAAAGGACTGCTTGCCGTCAGAAAT
GGCGGTGCAGGGGGTCATCACGTTGGGGCGGCAACACCGAACCCAACAAC
ATGACGGGGCGTGGGGTGGGGGCGGGGTCAGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2513:6800..11081- >mRNA_H-paniculata_contig2513.6836.1 ID=mRNA_H-paniculata_contig2513.6836.1|Name=mRNA_H-paniculata_contig2513.6836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig2513:6800..11081- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGGTGGTAGCAACATCGCGGCAGGGGAGGGGCCAGCATACATTGT
CTGTGCGCTCCCGTATCGTAACGACGCTGTCGGTCGAGAGGTGGAATGGG
GACTAGACACGGCGTTGGCCATCGTAGAGGAGGCTGTGGATGCGTTCGAT
CCGCCGAGGATAGAGGCCCGGCCTGTGCGGGGTAGCTGGCCGGCAGAGCT
GCAGGAGAGGGCAAAGATGGCGGGTGGTAGCAACATCGCGGCAGGGGAGG
GGCCAGCATACATTGTCTGTGCGCTCCCGTATCGTAACGACGCTGTCGGT
CGAGAGGTGGAATGGGGACTAGACACGGCGTTGGCCATCGTAGAGGAGGC
TGTGGATGCGTTCGATCCGCCGAGGATAGAGGCCCGGCCTGTGCGGGGTA
GCTGGCCGGCAGAGCTGCAGGAGAGGGCAAAGAGCGTGGACACGTTCGAG
CTACTGCGATCGGTGTACTTCACGCGAGCGGGCAACAGCCTGCCCGAGAT
CCACCGATCCGTGCCCAAGATAGAGGCGGACTTCTACATGTGGTTGGCGT
GTCGTAAGCAGCAGTGGCGCCAACACAGGTCGAACAAGAGGGCGCGGCGA
CAACTCACGCCAGAGGAAGACTTCCCCAGAGCGTGGACACGTTCGAGCTA
CTGCGATCGGTGTACTTCACGCGAGCGGGCAACAGCCTGCCCGAGATCCA
CCGATCCGTGCCCAAGATAGAGGCGGACTTCTACATGTGGTTGGCGTGTC
GTAAGCAGCAGTGGCGCCAACACAGGTCGAACAAGAGGGCGCGGCGACAA
CTCACGCCAGAGGAAGACTTCCCCAGGTGGTTGCAGCAGCGCAAGTGGCA
TTGGAAAACCAGCAAAATGGAGCGAGAGTCCCGCAACACTCCTCCGCTCG
AGGTGGACTTCTATCGATGGTTGGCAGAGCGAAAAAAAGTGTGGCGCTTG
CAGAGGATGACCAAGAAACACTCGGCGGGAAAAGGACTGCTTGCCGTCAG
AAATGGCGGTGCAGGGGGTCATCACGTTGGGGCGGCAACACCGAACCCAA
CAACATGAGTGGTTGCAGCAGCGCAAGTGGCATTGGAAAACCAGCAAAAT
GGAGCGAGAGTCCCGCAACACTCCTCCGCTCGAGGTGGACTTCTATCGAT
GGTTGGCAGAGCGAAAAAAAGTGTGGCGCTTGCAGAGGATGACCAAGAAA
CACTCGGCGGGAAAAGGACTGCTTGCCGTCAGAAATGGCGGTGCAGGGGG
TCATCACGTTGGGGCGGCAACACCGAACCCAACAACATGA back to top
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