mRNA_H-paniculata_contig2512.6835.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2512.6835.1
Unique NamemRNA_H-paniculata_contig2512.6835.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2512.6835.1 vs. uniprot
Match: D7G5L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L9_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.330e-7
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:   89 PNAPLPPWVKDLPPVRDVRKQLASRLVIPFLDQHSYP 199
            P+   PPWVK+LPPVRD R+Q AS  +IPFL+QH YP
Sbjct:  131 PSPSAPPWVKELPPVRDGRRQFASGEIIPFLEQHVYP 167
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BLAST of mRNA_H-paniculata_contig2512.6835.1 vs. uniprot
Match: A0A6H5KDX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.480e-7
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:   89 PNAPLPPWVKDLPPVRDVRKQLASRLVIPFLDQHSYP 199
            P+   PPWVK LPPVRD R+Q AS  +IPFL+QH YP
Sbjct:  124 PSPSAPPWVKQLPPVRDGRRQFASGEIIPFLEQHVYP 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2512.6835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5L9_ECTSI1.330e-764.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDX6_9PHAE2.480e-764.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2512contigH-paniculata_contig2512:15265..16691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_008970.1
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.67229-CDS-H-paniculata_contig2512:15264..154051622929738.67229-CDS-H-paniculata_contig2512:15264..15405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2512 15265..15405 -
1691480990.0853362-CDS-H-paniculata_contig2512:15264..154051691480990.0853362-CDS-H-paniculata_contig2512:15264..15405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2512 15265..15405 -
1622929738.709644-CDS-H-paniculata_contig2512:16631..166911622929738.709644-CDS-H-paniculata_contig2512:16631..16691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2512 16632..16691 -
1691480990.0967574-CDS-H-paniculata_contig2512:16631..166911691480990.0967574-CDS-H-paniculata_contig2512:16631..16691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2512 16632..16691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2512.6835.1prot_H-paniculata_contig2512.6835.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2512 15265..16691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2512.6835.1

>prot_H-paniculata_contig2512.6835.1 ID=prot_H-paniculata_contig2512.6835.1|Name=mRNA_H-paniculata_contig2512.6835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
VAFPLPLKGAEMRKEAARSQNASQDSGFTTERPLTALGERPSASTRRPKA
AGQQTSHTFSGPALVP*
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mRNA from alignment at H-paniculata_contig2512:15265..16691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2512.6835.1 ID=mRNA_H-paniculata_contig2512.6835.1|Name=mRNA_H-paniculata_contig2512.6835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1427bp|location=Sequence derived from alignment at H-paniculata_contig2512:15265..16691- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCGTTTCCGTTGCCGCTGAAGGGAGCAGAGATGCGGAAGGAGGCTGC
TCGGTCTCAGGTGAAACCCGCGAATAATTCAACGACATGAGTGTGTTCGG
ACGAGGAACCGTCTCGTCTCGATGCGCTTCTAATTTACAAGGGAACGGCG
TGCACACTGGAAAATATCCGAACTTATCTCTTGAGCTCTGTACCCCTGGC
ATTGGTTCAATGAATCCACTCCCTTTCACCGTCCTCGAAAGGTTCTGAAT
CTCCTCATTCGACGACTGCTACACGCTGCTTTACACCGTGTTTTGTTACC
ACCCTCCAGGCCGATTTCTCTGTACTTCGACCAGAAGCCGTTACTCTTTC
GCCGACAGTCAAATGGAGTTTAAGGAAGTGGGGACTTGATGTGAACGCTT
TTGAGCGGCCAGACGGCACCAAACCGCCTCGATGGTCAAAGGCAAGGAAT
CTACAGTACCCTGAGATTAACGCGCTCCATACACGTGCTGTCGCGTGGGT
TTCATCTGCGCGCGAACGAAAATGTGAACCAATCAACGTCGTATCGTATC
CTGTCGCAACATACCGCGAGACGAAAAGGGGCACACCTTGGATGAAGGCT
GATTTAGGTCGTCGCGGATTTTGGAACATGACTATGACCGCACGAGGACA
CTTGGCACTGTCTGAAACCTGTCAAGTCGACACTACAAAATCTCTTGATG
CCCTCATGGAGCGCTTCTTCTCGTATTTGGAGTACGAGCGCACGTCCACA
GAATTTTTTATCGAACAGTCTTGACGTGAAGATAATAATTTTGATCCAAG
CTGATGAAACCACACTTTGGATTGGTCGTTTTTAAGGGTGTATACTATCG
AAATGTACGGTACAAGCAGGTGAGATTTCGGTCTGTGTTGCGATGCAGCG
CTACCCCACAATATTTTCCTGAAAAAGAATTATTAGCTTGATCCCTATGC
TCGCCGGACTATAGGTATTTGGTCACACGAGTAACAAATGGGCCAACCAA
GAACTGGTGATCAGGGCCGCCAGAGAAAAGCAGGAATTTTTCCTGAAGCT
AGGTGCATCTTCTTCCCCTTCAAGGTATCACCACCAAGTTCGTTTTTCTC
AAAAATGTACAATAAACCGCAACACGGTTTTCAGCCCCAGTCAAAGATTT
TAGAGGACTTTCGCATTCGTCCACCGCATGTCTTCGCACGAATATTACTA
TTTGATTGCAAAAATACTCTACCTCACTCTCGCATCCTATCCCCCCCCCG
TCTTCGCGCGGTCTCCACTGTACACTGCATCGGCAGAATGCCTCTCAAGA
CAGCGGATTTACCACCGAACGCCCCCTTACCGCCCTGGGTGAAAGACCTT
CCGCCAGTACGCGACGTCCGAAAGCAGCTGGCCAGCAGACTAGTCATACC
TTTTCTGGACCAGCACTCGTACCCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2512:15265..16691-

>mRNA_H-paniculata_contig2512.6835.1 ID=mRNA_H-paniculata_contig2512.6835.1|Name=mRNA_H-paniculata_contig2512.6835.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig2512:15265..16691- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCGTTTCCGTTGCCGCTGAAGGGAGCAGAGATGCGGAAGGAGGCTGC
TCGGTCTCAGGTTGCGTTTCCGTTGCCGCTGAAGGGAGCAGAGATGCGGA
AGGAGGCTGCTCGGTCTCAGAATGCCTCTCAAGACAGCGGATTTACCACC
GAACGCCCCCTTACCGCCCTGGGTGAAAGACCTTCCGCCAGTACGCGACG
TCCGAAAGCAGCTGGCCAGCAGACTAGTCATACCTTTTCTGGACCAGCAC
TCGTACCCTGAAATGCCTCTCAAGACAGCGGATTTACCACCGAACGCCCC
CTTACCGCCCTGGGTGAAAGACCTTCCGCCAGTACGCGACGTCCGAAAGC
AGCTGGCCAGCAGACTAGTCATACCTTTTCTGGACCAGCACTCGTACCCT
GA
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