mRNA_H-paniculata_contig2511.6834.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2511.6834.1 vs. uniprot
Match: D7FZX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX1_ECTSI) HSP 1 Score: 741 bits (1912), Expect = 2.340e-242 Identity = 422/819 (51.53%), Postives = 517/819 (63.13%), Query Frame = 1
Query: 187 VDSVRIHQQVVMKHVLDQDLRMDLAGFDDALVALVAMKHPELKHKAGD-EFLRDLAFNYLLVKPELEGVRDMAWLWAKTWIRMEIKRRQYLKELARLEALRVAAARKVASIAIQFWFRQMSWNFKFRLVCERRRTETLRRWKEWRAAKRRKRKRREQAIVFRQSRNLNGCMVMVSMSRKDGRGLDMFVKAYVPRTQ-ETFRFFISEADLHDQLCRALKTDSLSGAEILANLEVVASRMSCIQQRDGRRWIVSRAKCVPAECGSLVYKVATCLHGIIYFFKVYRSSTDVVITAYEPKRCETLRAQMPFFGPRGLREWLVWDVETGTRRRRGELQRRLGEARKILNLHGMHVEVPRDKLLAARRLRVSQDTKEQRI--LDKTRESQRSGGRSSNSIKEVAFSMGSIQFLTATGPVADRVNDNGPTGKDLQDNSALVAAAPEDDCASKIEPELMGMGGLPFDWYEGCAADVALFGSN-PLEIDEVASSPEIDLTERGRETTLAKWIIRRLKVETIRAVWQSSPPGCKRVGGGYGSGGGDNSARKTKGPSVFWRKILVTSYQVEIRRREMAASRVQGLAHMKRARERMRELVLQQFEKRFDLYSGTFYYHSNKTGVDSFAKPRILRSDQDIEEPPDQWITQRDKSGKVYHTNPATGQHSWLSVAEAAALIVKSCRHSLRAFYGLPSREMLEGGLRFSRETEKAWKNGGGRLASTLNYALVLHTHKHDLDTAGPLFESALKLSAENPLVQRVCGLFLLASCKFPREDSRRKALALLAAAAYRDRELDTFILAEGAFYHFGLLMQPGHSRSLLNWALVQEHIRHD 2628
VDSVR HQQVVMKHVLDQDLRMDLAGF DAL ALV +++PEL+ + E LRDL FN++L++PELEGVR+MAWL AKTWIRM +KR+QYL EL RLEALR+AA RK AS IQ WFR++SW +KF VCE+RR ETLRR +EWRA KRRKR+RRE +G M+ + Y + RF I+E LH QLCR LKT+SLSGAEIL NL+ VA+R+SC +QRDGRRW+VSRAK V AE GSLVY+VA+ L G+ YF KVYRS+TDV +TAYEPKRCETLR +P G RG+ W+ W+VET T RRR EL RRLGE +KIL LH M+VE+ R KLLAARRL + +E + D T +++R G A + A + EL GMG LPF WY+G D+ LFG PLE DEVAS+P+ +LVT Y++E +RR +AASRVQGL+ M++AR+R R +L QFEKRFD+YSG FYYHSNKT +D+F KP +LR DQD+EEP D+WI Q+D+SGK ++TNPATGQ S+LSV EAAA+IVK+CR+ L+AFYG+P +++E G+RFS+E E+AW GGGRLASTLNYALVLHTH HDLDTAGPL+++AL+LS ENPLVQR CGLFLL+SC+FPRE SR K LALL+AA YR +LLNWALV EH+R D
Sbjct: 992 VDSVRNHQQVVMKHVLDQDLRMDLAGFKDALSALVILRNPELEQRKSQVEGLRDLVFNHVLIRPELEGVREMAWLQAKTWIRMAVKRKQYLAELRRLEALRIAALRKAASTTIQTWFRRLSWLWKFAAVCEKRRLETLRRLREWRAVKRRKRRRRE-----------------------EGFDTAMYTQRYQRLSMISNGRFVITEKALHAQLCRTLKTESLSGAEILENLDKVAARLSCRKQRDGRRWVVSRAKRVAAESGSLVYRVASRLDGVFYFLKVYRSATDVAVTAYEPKRCETLRVVLPIRGARGISVWIEWEVETATLRRRRELSRRLGEVQKILKLHEMNVEIERPKLLAARRLGSAVQEREAPLPAADTTSKAKRLPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAE-APPTDAELTGMGALPFVWYDGAVPDLELFGDGTPLETDEVASAPD----------------------------------------------------------------VLVTFYEIETQRRNLAASRVQGLSRMRQARDRARSRILSQFEKRFDVYSGKFYYHSNKTKIDTFVKPSLLRPDQDLEEPADEWIEQKDRSGKTFYTNPATGQRSFLSVPEAAAVIVKACRYHLQAFYGIPGPDVIERGIRFSQEAEEAWVQGGGRLASTLNYALVLHTHLHDLDTAGPLYDAALELSGENPLVQRACGLFLLSSCRFPREQSRAKGLALLSAADYR---------------------------ALLNWALVLEHVRRD 1695
BLAST of mRNA_H-paniculata_contig2511.6834.1 vs. uniprot
Match: A0A6H5KPG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG2_9PHAE) HSP 1 Score: 487 bits (1254), Expect = 1.510e-159 Identity = 235/377 (62.33%), Postives = 292/377 (77.45%), Query Frame = 1
Query: 1501 ASKIEPELMGMGGLPFDWYEGCAADVALFGSN-PLEIDEVASSPEIDLTERGRETTLAKWIIRRLKVETIRAVWQSSPPGCKRVGGGYGSGGGDNSARKTKGPSVFWRKILVTSYQVEIRRREMAASRVQGLAHMKRARERMRELVLQQFEKRFDLYSGTFYYHSNKTGVDSFAKPRILRSDQDIEEPPDQWITQRDKSGKVYHTNPATGQHSWLSVAEAAALIVKSCRHSLRAFYGLPSREMLEGGLRFSRETEKAWKNGGGRLASTLNYALVLHTHKHDLDTAGPLFESALKLSAENPLVQRVCGLFLLASCKFPREDSRRKALALLAAAAYRDRELDTFILAEGAFYHFGLLMQPGHSRSLLNWALVQEHIRHD 2628
A + EL GMG LPF WY+G D+ LFG PLE DEVAS+PEID+T RGRE TLA+WI+RR+KV+ +R V P G + + P W ++LVT Y++E++RR +AASRVQGL+ M++AR+R R +L QFEKRFD+YSG FYYHSNKT VD+F KPR+LR DQD+EEP D+WI Q+D+SGK ++TNPATGQ S+LSV EAAA+IVK+CR+ L+AFYG+P +++E G+RFS E E+AW GGGRLASTLNYALVLHTH HDLDTAGPL+++AL+LS ENPLVQR CGLFLL+SC+FPRE SR K LALL+AA YRDR+L+TF LAEGAFYHFGLL P H+R+LLNWAL+ EH+R D
Sbjct: 95 APPTDAELTGMGALPFVWYDGAVPDLELFGDGTPLETDEVASAPEIDITARGREVTLARWILRRIKVDRVRVVEVELPCGGGXXXXXXXXXXSKQKQKVARRPVARWERVLVTFYEIEMQRRNLAASRVQGLSRMRQARDRARSRILSQFEKRFDVYSGKFYYHSNKTKVDTFVKPRLLRPDQDLEEPADEWIEQKDRSGKTFYTNPATGQRSFLSVPEAAAVIVKACRYHLQAFYGIPGPDVIERGIRFSHEAEEAWVQGGGRLASTLNYALVLHTHLHDLDTAGPLYDAALELSGENPLVQRACGLFLLSSCRFPREQSRAKGLALLSAADYRDRDLNTFALAEGAFYHFGLLSMPNHARALLNWALILEHVRRD 471
BLAST of mRNA_H-paniculata_contig2511.6834.1 vs. uniprot
Match: A0A835Z8Q4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q4_9STRA) HSP 1 Score: 114 bits (285), Expect = 5.050e-22 Identity = 186/793 (23.46%), Postives = 292/793 (36.82%), Query Frame = 1
Query: 415 KTWIRMEIKRRQYLKELARLEALRVAAARKVASIAIQFWFRQMSWNFKFRLVCERRRTETLRRWKEWRAAKRRKRKRREQAIVFRQSRNLNGCMVMV--SMSRKDG---------------------RGLDMFVKAYVPRTQETFRFFISEADLHDQLCRALKTDSLSGAEIL--ANLEVVASRMSCIQQRDGRRWIVSRAKCVPAECGSLVYKVATCLHGIIYFF-------------KVYRSSTDVVITAYEPKRCETLRAQMPFFGPRGLREWLV---------------WDVETGTRRRRGELQRRLGEARKILNLHGMHVEVPRDKLLAARRLRVSQDTKE----------QRILDKTRESQRSGGRSSNSIKEV-AFSMGSIQFLTATGPVADRVNDNGPTGKDLQDNSALVAAAPEDDCASKIEPELMGMGGLPFDWYEGCAADVALFGSNPLEIDEVASSPEIDLTERGRETTLAKWIIRRLKVETIRAVWQSSPPGCKRVGGGYGSGGGDNSARKTKGPSVFWRKILVTSYQVEIRRREMAASRVQGLAHMKRARERMRELVLQQFEKRFDLYSGTFYY-HSNKTGVDSFAKPRILRSDQ-------DIEEPPDQ----------------WITQ-----------------------RDKSGKVYHTNPATGQHSWLSVAEAAALIVKSCRHSLRAF------YGLPSREMLEGGLRFSRETEKAWKNGGGRLASTLNYALVLHTHKHDLDTAGPLFESALKLSAENPLVQRVCGLFLLASCK 2442
+T RM RR+ L L R A R+A ++VAS +Q WFR W + ++ R+ RE A V R ++G +V V S++ G R +DM ++ Y+P TQ++F + E +L LCRAL+ D +SGAE+L ANL + R + W + P CG + I+ F +V S ++ A K C + A P W E GT R +R+G +++H P++ +L S +T+ Q L+ R+ R R+ + + V A + + P + +S VA D+ PEL G+ Y G AD+A G++ + ++ DL + E L +W+++RL + P +++ T +QV+ R AA+R QG+ M RAR R R L+ +Q+ K +D G F+Y H + + + +R+ + D + D+ W+ Q +GK Y+ N ATG S LS AAALI + L F +G S + G +F E+ ++ RL+ LN A+ LH H+ L A L+ESAL +S +N LVQR +FLLAS +
Sbjct: 869 QTLARMVPPRRRALPMLLRARAARLAHRQRVASTRLQRWFRHERWIWYLQV-----------------------RRLREGARVMRHVGRVHGHIVCVTASLALPAGADPEAADPPAAPAEQPLVARLRSIDMVLQVYLPHTQQSFAVAVHEGELRRHLCRALRVDGISGAELLDPANLNIARRR---------QYWRGAAGPRQPQTCGGFARLSPQLQNANIHHFVRKKGQCPTIAVLRVDGISGAELLNAANLK-CHSRAAPSPEAATGSXXXXXXXXXXXXXVEIFLRKRWPPEAGTVVHRST--QRIGSVLYYIHVH----RSPQELVLRLYDPATSANTRILVPFRGSASLQEWLEWERDKDRRARRAEVTKRIVTARKLVQLHSYGVAAPEGQLAAAQRVVRHAVGSSSTEVAQLSTDE---PPPPELEGICEGLLTPYGGVVADLAHLGTSEAALQPPPAALREDLFSQAHEGMLMRWLLQRLVAQ----------------------------------PHGVTGQVVKTLFQVQTERWNAAATRAQGVYRMWRARARCRALLREQWVKGYDTTRGAFFYRHVRSECIYACHQRHCMRACEHTPHGFSDKAKSADERFLPYEGKNGDTDKRWWLCQLRAAGCRYASDHLHSAAVLAPPPHANAGKTYYLNTATGATSRLSEERAAALIQGAAATKLAPFRSRALGHGALSLVDVAEGRKFHMHAEENYRLHPQRLSCVLNLAMALHLHQGQLGKARRLYESALAISPDNSLVQRAYAIFLLASAQ 1585
BLAST of mRNA_H-paniculata_contig2511.6834.1 vs. uniprot
Match: A0A7S2MBM9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MBM9_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.390e-17 Identity = 74/270 (27.41%), Postives = 128/270 (47.41%), Query Frame = 1
Query: 1825 ILVTSYQVEIRRREMAASRVQGLAHMKRARERMRELVLQQFEKRFDLYSGTFYYHSNKTGVDSFAKPRILRSDQDIEEPPDQWITQRD---KSGKVYH--TNPATGQHSWLSVAEAAALIVKSCR--HSLRAFYGLPSREMLEGGLRFSRETEKAWKNGGGRLASTLNYALVLHTHKHDLDTAGPLFESALKLSAENPLVQRVCGLFLLASCKFPREDSRRKALALLAAAAYRDRELDTFILAEGAFYHFGLLMQPGHSRSLLNWALVQE 2613
+++ ++ E R +VQ R+ + + Q+EK FD + + Y + T KP++L D+ +E P D+W + +G+ H N ATGQ SWLS EAA L+ + R H + + ++F ++ +L++ +NYA++ H D D A ++E A+KLS +PL+ RV +FLLAS + P + + A LL A DR A ++ + +L+ + +LLN+AL+ +
Sbjct: 1 MILLQFEAEEERVLKLVIKVQSQWRRLRSFRHAKSETMHQYEKIFDRENQIYAYRNMLTDQRQKDKPKLLGEDE-LENPVDEWRKEETYDATTGQTIHYFANYATGQSSWLSEEEAARLVQRRYRSKHESDLIGKKITFADVVKAMQFINGARMKYEQDPTKLSNIVNYAILSHCLDLDFDAARSIYERAVKLSPNHPLISRVYAIFLLASRQAPHTTTFQTACQLLHDADVADRNQTMIKSAAEIYFRWAVLVDARNPLTLLNYALLHQ 269
BLAST of mRNA_H-paniculata_contig2511.6834.1 vs. uniprot
Match: F0YG15_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG15_AURAN) HSP 1 Score: 93.6 bits (231), Expect = 1.480e-15 Identity = 88/294 (29.93%), Postives = 147/294 (50.00%), Query Frame = 1
Query: 427 RMEIKRRQYLKELARLEALRVAAARKVASIAIQFWFRQ--MSWNFKFRLVCERRRTET---LRRWKEWRAAKRRKRKRREQAIVFRQSRNLNGCMVMVSMSRKDGRG----LDMFVK--AYVPRTQETFRFFISEADLHDQLCRALKTDSLSGAEIL--ANLEVVASRMSCIQQRDGRRWIVSRAKCVPAECGSLVYKVATCLHGIIYFFKVYRSSTDVVITAYEPKRCETLRAQMPFFGPRGLREWLVWDVETGTRRRRGELQRRLGEARKILNLHGMHVEVPRDKLLAARRL 1269
R + R+ Y L L R+ R A+ +Q W+R +S +++ R++ +R E LRR ++ A RKR A VFR+ + +NG +V ++R D LD +K YVP+TQETF F +S+ ++ + A+ D LSG EIL N+ +A R+ + + +R IV + +E G V + + G +Y + S ++V AY K CETLR + + ++EWL D ET + R E + EA+++L L V+V ++L ++++
Sbjct: 2077 RRRLFRKFYNDRLHYLSVCRLYRYRASAAFRLQAWYRYCAISRDYRERVMAAKREHEERCRLRRLEQHEAYLVRKR-----ATVFRRCKFVNGTLVFTRITRLDPSREMAVLDYGLKLEVYVPQTQETFTFRMSDLEVRLSIEAAIGVDGLSGDEILDSKNISTIADRL--LVRVINQRPIVIFTRRGHSERGRQVLRRGKMVDGQVYVVSCFHSDDEIVFHAYNYKSCETLRTSIT---TKFVKEWLTKDEETKQNKARSERLAAIVEAKRVLRLQATGVDVEPEELEKSKKI 2360 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2511.6834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2511.6834.1 >prot_H-paniculata_contig2511.6834.1 ID=prot_H-paniculata_contig2511.6834.1|Name=mRNA_H-paniculata_contig2511.6834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=876bp GRSTPNKKGNGRGNITRVGVGSRGISRGSSAAKHGGKPGGAQVVSVGSAEback to top mRNA from alignment at H-paniculata_contig2511:1082..20683- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2511.6834.1 ID=mRNA_H-paniculata_contig2511.6834.1|Name=mRNA_H-paniculata_contig2511.6834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=19602bp|location=Sequence derived from alignment at H-paniculata_contig2511:1082..20683- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2511:1082..20683- >mRNA_H-paniculata_contig2511.6834.1 ID=mRNA_H-paniculata_contig2511.6834.1|Name=mRNA_H-paniculata_contig2511.6834.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5256bp|location=Sequence derived from alignment at H-paniculata_contig2511:1082..20683- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |