mRNA_H-paniculata_contig25106.6832.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25106.6832.1
Unique NamemRNA_H-paniculata_contig25106.6832.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: D7FZX7_ECTSI (Agmatinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.100e-14
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHA 111
            +VGGFSSRE+IRLLRSMKGLNIVSGDVVEVAPAYDHA
Sbjct:  320 EVGGFSSRELIRLLRSMKGLNIVSGDVVEVAPAYDHA 356
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: A0A4Y4JXT8_9ACTN (Agmatinase n=1 Tax=Streptomyces sp. 6-11-2 TaxID=2585753 RepID=A0A4Y4JXT8_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 3.870e-11
Identity = 28/37 (75.68%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHA 111
            ++GGF+SRE++RLLRS+ GLNI+ GDVVEVAPAYDHA
Sbjct:  262 EMGGFNSRELLRLLRSLDGLNIIGGDVVEVAPAYDHA 298
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: A0A5C7Y657_9MYCO (Agmatinase n=6 Tax=Mycolicibacterium TaxID=1866885 RepID=A0A5C7Y657_9MYCO)

HSP 1 Score: 61.2 bits (147), Expect = 6.980e-10
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHA 111
            + GGF+SRE++R+LR ++GLNIV  DVVEVAPAYDHA
Sbjct:  269 EAGGFTSRELLRMLRKLRGLNIVGADVVEVAPAYDHA 305
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: A0A194XHD6_9HELO (Arginase/deacetylase n=1 Tax=Mollisia scopiformis TaxID=149040 RepID=A0A194XHD6_9HELO)

HSP 1 Score: 61.2 bits (147), Expect = 7.410e-10
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHAGE 117
            + GG++SRE+IR+LR ++GLNIV GD+VEVAPAYD AGE
Sbjct:  327 EAGGWTSRELIRILRGIEGLNIVGGDIVEVAPAYDGAGE 365
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: A0A8H4VX97_9HELO (Uncharacterized protein n=1 Tax=Cudoniella acicularis TaxID=354080 RepID=A0A8H4VX97_9HELO)

HSP 1 Score: 60.8 bits (146), Expect = 9.730e-10
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHAGE 117
            +VGGF+SRE+IRLLR ++GLN+V  D+VEV+PAYD  GE
Sbjct:  294 EVGGFTSREVIRLLRGLEGLNVVGADIVEVSPAYDGTGE 332
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: UPI00145C8C67 (agmatinase n=1 Tax=Brevibacterium sp. 'Marine' TaxID=2725563 RepID=UPI00145C8C67)

HSP 1 Score: 60.1 bits (144), Expect = 1.710e-9
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHA 111
            ++GG  SRE++R+LRS+KGLNIV  DVVEV+PAYDHA
Sbjct:  258 EMGGLHSRELLRMLRSLKGLNIVGADVVEVSPAYDHA 294
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: A0A1L7XPD2_9HELO (Related to agmatinase n=1 Tax=Phialocephala subalpina TaxID=576137 RepID=A0A1L7XPD2_9HELO)

HSP 1 Score: 60.1 bits (144), Expect = 1.900e-9
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHAGE 117
            + GG++SRE+IR+LR ++GLNIV GDVVEVAPAYD  GE
Sbjct:  326 EAGGWTSRELIRILRGIEGLNIVGGDVVEVAPAYDGVGE 364
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: A0A1H1Y4P3_9MICO (Agmatinase n=1 Tax=Brevibacterium siliguriense TaxID=1136497 RepID=A0A1H1Y4P3_9MICO)

HSP 1 Score: 59.3 bits (142), Expect = 3.210e-9
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHA 111
            ++GG  SREI+R++RS+ GLNIV  DVVEVAPAYDHA
Sbjct:  258 EMGGMHSREILRIIRSLSGLNIVGADVVEVAPAYDHA 294
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: UPI001246B0F3 (agmatinase n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI001246B0F3)

HSP 1 Score: 59.3 bits (142), Expect = 3.390e-9
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    7 GGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHA 111
            GGFSSRE++ LLRS+ G+NIV  DVVEVAPAYDHA
Sbjct:  269 GGFSSRELLALLRSLGGINIVGADVVEVAPAYDHA 303
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BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Match: UPI001AA1A667 (agmatinase n=1 Tax=Leucobacter ruminantium TaxID=1289170 RepID=UPI001AA1A667)

HSP 1 Score: 58.9 bits (141), Expect = 4.410e-9
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHA 111
            ++GG  SRE+++LLR +KGLNIV  DVVEVAPAYDHA
Sbjct:  258 EMGGLHSRELLQLLRGLKGLNIVGADVVEVAPAYDHA 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25106.6832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZX7_ECTSI4.100e-1494.59Agmatinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A4Y4JXT8_9ACTN3.870e-1175.68Agmatinase n=1 Tax=Streptomyces sp. 6-11-2 TaxID=2... [more]
A0A5C7Y657_9MYCO6.980e-1070.27Agmatinase n=6 Tax=Mycolicibacterium TaxID=1866885... [more]
A0A194XHD6_9HELO7.410e-1069.23Arginase/deacetylase n=1 Tax=Mollisia scopiformis ... [more]
A0A8H4VX97_9HELO9.730e-1066.67Uncharacterized protein n=1 Tax=Cudoniella acicula... [more]
UPI00145C8C671.710e-970.27agmatinase n=1 Tax=Brevibacterium sp. 'Marine' Tax... [more]
A0A1L7XPD2_9HELO1.900e-969.23Related to agmatinase n=1 Tax=Phialocephala subalp... [more]
A0A1H1Y4P3_9MICO3.210e-970.27Agmatinase n=1 Tax=Brevibacterium siliguriense Tax... [more]
UPI001246B0F33.390e-977.14agmatinase n=1 Tax=Bacillus cereus TaxID=1396 RepI... [more]
UPI001AA1A6674.410e-970.27agmatinase n=1 Tax=Leucobacter ruminantium TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25106contigH-paniculata_contig25106:3187..3306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog2880.D7FZX7
KEGG rclassRC00024,RC00329
KEGG koko:K01480
KEGG ReactionR01157
KEGG Pathwayko00330,ko01100,map00330,map01100
KEGG ModuleM00133
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005488,GO:0006082,GO:0006520,GO:0006525,GO:0006576,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0008783,GO:0009058,GO:0009064,GO:0009308,GO:0009309,GO:0009445,GO:0009446,GO:0009987,GO:0016787,GO:0016810,GO:0016813,GO:0019627,GO:0019752,GO:0030145,GO:0033388,GO:0034641,GO:0042401,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046872,GO:0046914,GO:0071704,GO:0071941,GO:0097164,GO:1901564,GO:1901566,GO:1901576,GO:1901605
EggNOG free text desc.agmatinase activity
EggNOG OGsCOG0010@1,KOG2964@2759
EC3.5.3.11
COG Functional cat.E
BiGG ReactioniB21_1397.B21_02730,iECB_1328.ECB_02767,iECD_1391.ECD_02767
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.1609259-CDS-H-paniculata_contig25106:3186..33061622929738.1609259-CDS-H-paniculata_contig25106:3186..3306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25106 3187..3306 -
1691480989.869721-CDS-H-paniculata_contig25106:3186..33061691480989.869721-CDS-H-paniculata_contig25106:3186..3306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25106 3187..3306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25106.6832.1prot_H-paniculata_contig25106.6832.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25106 3187..3306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25106.6832.1

>prot_H-paniculata_contig25106.6832.1 ID=prot_H-paniculata_contig25106.6832.1|Name=mRNA_H-paniculata_contig25106.6832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
QVGGFSSREIIRLLRSMKGLNIVSGDVVEVAPAYDHAGES
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mRNA from alignment at H-paniculata_contig25106:3187..3306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25106.6832.1 ID=mRNA_H-paniculata_contig25106.6832.1|Name=mRNA_H-paniculata_contig25106.6832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at H-paniculata_contig25106:3187..3306- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTGGTGGCTTTTCGTCAAGAGAGATCATTCGTCTGCTCAGATCCAT
GAAGGGTCTCAACATCGTATCCGGGGATGTGGTGGAGGTAGCCCCTGCCT
ACGACCACGCCGGTGAGTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig25106:3187..3306-

>mRNA_H-paniculata_contig25106.6832.1 ID=mRNA_H-paniculata_contig25106.6832.1|Name=mRNA_H-paniculata_contig25106.6832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig25106:3187..3306- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTGGTGGCTTTTCGTCAAGAGAGATCATTCGTCTGCTCAGATCCAT
GAAGGGTCTCAACATCGTATCCGGGGATGTGGTGGAGGTAGCCCCTGCCT
ACGACCACGCCGGTGAGTCTCAGGTTGGTGGCTTTTCGTCAAGAGAGATC
ATTCGTCTGCTCAGATCCATGAAGGGTCTCAACATCGTATCCGGGGATGT
GGTGGAGGTAGCCCCTGCCTACGACCACGCCGGTGAGTCT
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