mRNA_H-paniculata_contig25104.6831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25104.6831.1
Unique NamemRNA_H-paniculata_contig25104.6831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25104.6831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25104contigH-paniculata_contig25104:505..2139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size513
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25104.6831.1prot_H-paniculata_contig25104.6831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25104 701..2089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.0623322-UTR-H-paniculata_contig25104:504..7001622929738.0623322-UTR-H-paniculata_contig25104:504..700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25104 505..700 -
1691480989.8252916-UTR-H-paniculata_contig25104:504..7001691480989.8252916-UTR-H-paniculata_contig25104:504..700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25104 505..700 -
1622929738.1138093-UTR-H-paniculata_contig25104:2089..21391622929738.1138093-UTR-H-paniculata_contig25104:2089..2139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25104 2090..2139 -
1691480989.8548748-UTR-H-paniculata_contig25104:2089..21391691480989.8548748-UTR-H-paniculata_contig25104:2089..2139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25104 2090..2139 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929738.0810258-CDS-H-paniculata_contig25104:700..7531622929738.0810258-CDS-H-paniculata_contig25104:700..753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25104 701..753 -
1691480989.8357985-CDS-H-paniculata_contig25104:700..7531691480989.8357985-CDS-H-paniculata_contig25104:700..753Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25104 701..753 -
1622929738.097235-CDS-H-paniculata_contig25104:1875..20891622929738.097235-CDS-H-paniculata_contig25104:1875..2089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25104 1876..2089 -
1691480989.8455348-CDS-H-paniculata_contig25104:1875..20891691480989.8455348-CDS-H-paniculata_contig25104:1875..2089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25104 1876..2089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25104.6831.1

>prot_H-paniculata_contig25104.6831.1 ID=prot_H-paniculata_contig25104.6831.1|Name=mRNA_H-paniculata_contig25104.6831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MMLQNVPPLWYACTGVKQNGGTMSQASRNKVAVELYENFAVYSFIRWVEE
TPGIDLPRWATHKLFGKANENSRRKNMERFRQACKMQT*
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mRNA from alignment at H-paniculata_contig25104:505..2139-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25104.6831.1 ID=mRNA_H-paniculata_contig25104.6831.1|Name=mRNA_H-paniculata_contig25104.6831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1635bp|location=Sequence derived from alignment at H-paniculata_contig25104:505..2139- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAGTTAAGGGCTCAAGGGATCAAATCGACTGTCAGCAAGGCACAGTGG
ATGATGCTGCAGAATGTACCACCACTGTGGTACGCTTGTACTGGTGTGAA
GCAGAATGGTGGGACCATGTCCCAGGCCAGTAGGAACAAGGTCGCCGTTG
AGTTGTACGAGAACTTCGCGGTTTACAGCTTCATCCGCTGGGTGGAGGAA
ACGCCCGGAATAGACCTTCCTCGCTGGGCGACTCACAAGCTGTTCGGGAA
GGCAAATGAAAACAGTAAGTACATCTTGTACGTGGTACCTCGAATTGTAG
ATTATTTGTTCACCTGATTGGAATGCTGTAGTCATATTCATGCACGACGA
ATGTACTTGATCGTACGGGAGTACTGTCGCAGGTGTATGGAGCGGTACGT
CATCCGCCATACACGGATTGTACCTGCGTACCCGTCGATGTGGAGATATG
AATATGCCCATGTCCCTTCCTTATTCAATCGTGCCCGAAATGTATCCAAC
CTATATGTGCACTATCGTACTTATTGTGATTTACCGCGCTCGATGGTACG
GGAACGGTATCCGTTTGTTACCGTCATTACTTAGCATTCACCGTACCGAT
ATTTGATCGTGCCGGTGGCTCACCGTCCGTACGTTACCCTGATATTCTCC
TGACCCTTTACAGTTCCATTAATTACCGTGCCGGCGGCAAACCGCCCATA
TGTTGCGGTGCCGGCACCATGATTCCATACCATGGAAAGTGCCTGTCGGT
ACATGTACCGATTGCGAGTACGTGTCATTAAACGCTCAAAATCCCGTTTC
CAGACTGAATGTAACCTTTAAATTCAAAATCTTTCCCTGATTATGTTTTT
TTTTTTCTTTTCGGTGCTATTGCTCTCCACAAAAACTTGTCATGAATAAT
TCATTAAATTATTATTGATTCAAGCACTCATTCTTGTGCACCGCCACAAT
GACATCGATCCCATTTATTGGTCACGCAGATTATTTTCTCAAACTTCCCC
GCGCCGTCAACGGAGAAACGGTAGTGTATAACCGCGCCTGCGACCATTAT
ACCGTGTGTTATAGTTCAGGCCAACTTTTAGCAATTCATAATGTTCAGGC
CACGATTCACCTTTTCCTCACCGTGAAAAATCGCATTCCAAACGCCCCTC
CGAGAAAGGTGGCGCTCCACCCAAACTTCACCATGGCAAATCTCGTACAA
TTTGACCGCATTATTAGTTAACGTCCTTTCAATGGTTTTACTGTTCAATC
CCGTTTTCGTAAATCGTTACCGTGCCCAGCCCTTGAACAAGAGGGGCCAA
ATACGTGTACCCCGCGCGGTGCCAGGGACAAAATGAAGTGACCCTTTTGC
GCAACACTCCGGGTCCCTATATTTTCCTCTGCTCAGGTAGACGCAAGAAT
ATGGAACGCTTCCGTCAGGCATGCAAAATGCAGACATAATGGAACACATC
CGCGATAAAATGTGGGCGGAAATTCAGACCACAAAGGGTAGGGCGGAGAA
GAAGAGTACAAATGACAAGAAGGACACGACTCCGGTTCGGAGGAACATCA
CCATACAAGACGACGGGAACGCGGCACATGCACCGGTGTCGGCAGGAGGG
AACAGTGAGAACACAGAGAGAATAGGGGAGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig25104:505..2139-

>mRNA_H-paniculata_contig25104.6831.1 ID=mRNA_H-paniculata_contig25104.6831.1|Name=mRNA_H-paniculata_contig25104.6831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig25104:505..2139- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTGCAGAATGTACCACCACTGTGGTACGCTTGTACTGGTGTGAA
GCAGAATGGTGGGACCATGTCCCAGGCCAGTAGGAACAAGGTCGCCGTTG
AGTTGTACGAGAACTTCGCGGTTTACAGCTTCATCCGCTGGGTGGAGGAA
ACGCCCGGAATAGACCTTCCTCGCTGGGCGACTCACAAGCTGTTCGGGAA
GGCAAATGAAAACAATGATGCTGCAGAATGTACCACCACTGTGGTACGCT
TGTACTGGTGTGAAGCAGAATGGTGGGACCATGTCCCAGGCCAGTAGGAA
CAAGGTCGCCGTTGAGTTGTACGAGAACTTCGCGGTTTACAGCTTCATCC
GCTGGGTGGAGGAAACGCCCGGAATAGACCTTCCTCGCTGGGCGACTCAC
AAGCTGTTCGGGAAGGCAAATGAAAACAGTAGACGCAAGAATATGGAACG
CTTCCGTCAGGCATGCAAAATGCAGACATAAGTAGACGCAAGAATATGGA
ACGCTTCCGTCAGGCATGCAAAATGCAGACATAA
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