prot_H-paniculata_contig11050.683.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11050.683.1
Unique Nameprot_H-paniculata_contig11050.683.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length128
Homology
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BLAST of mRNA_H-paniculata_contig11050.683.1 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.880e-17
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 0 
Query:    5 LVNSPVGGRDGTGANYVVDFSRMMQVNLKTQFSRPIRRNVAFNASCRESWSWMN-GSRWEPIPLFVCLQLVAARDYRREQSTPVHV 89
            +V+S  GGR G GA Y + FS M QVN  + F R +RRNV       E+W W N GSRWE +P+ +CLQ+ A+RD R E ST  H+
Sbjct:   48 VVSSAQGGRAGAGATYTIHFSSMQQVNNASSFVRNVRRNVV-GVPSHETWEWKNNGSRWEAVPVPICLQISASRDLRGETSTTAHI 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11050.683.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIP8_ECTSI3.880e-1748.84RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004170WWE domainPFAMPF02825WWEcoord: 17..42
e-value: 5.8E-6
score: 26.8
IPR037197WWE domain superfamilyGENE3D3.30.720.50coord: 12..52
e-value: 4.6E-7
score: 32.2
IPR037197WWE domain superfamilySUPERFAMILY117839WWE domaincoord: 17..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11050contigH-paniculata_contig11050:3233..5283 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11050.683.1mRNA_H-paniculata_contig11050.683.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11050 3173..5811 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11050.683.1 ID=prot_H-paniculata_contig11050.683.1|Name=mRNA_H-paniculata_contig11050.683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MPTPLVNSPVGGRDGTGANYVVDFSRMMQVNLKTQFSRPIRRNVAFNASC
RESWSWMNGSRWEPIPLFVCLQLVAARDYRREQSTPVHVGDERRLPRRQE
PTANPLNRMHTYLVQPANLTLMVQDPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004170WWE-dom
IPR037197WWE_dom_sf