mRNA_H-paniculata_contig11050.683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11050.683.1
Unique NamemRNA_H-paniculata_contig11050.683.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11050.683.1 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 7.140e-24
Identity = 53/110 (48.18%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:    1 RWIDYDPFASSTVETGFLSGMPTPLVNSPVGGRDGTGANYVVDFSRMMQVNLKTQFSRPIRRNVAFNASCRESWSWMN-GSRWEPIPLFVCLQLVAARDYRREQSTPVHV 327
            RW+ YD F+SS +E+ F SG  + +V+S  GGR G GA Y + FS M QVN  + F R +RRNV       E+W W N GSRWE +P+ +CLQ+ A+RD R E ST  H+
Sbjct:   24 RWVSYDAFSSSAIESSFSSGGMSAVVSSAQGGRAGAGATYTIHFSSMQQVNNASSFVRNVRRNVV-GVPSHETWEWKNNGSRWEAVPVPICLQISASRDLRGETSTTAHI 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11050.683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIP8_ECTSI7.140e-2448.18RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11050contigH-paniculata_contig11050:3173..5811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog2880.D8LIP8
Preferred nameDTX3L
KEGG koko:K06058
KEGG Pathwayko04330,map04330
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000323,GO:0002230,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004842,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006325,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006996,GO:0007034,GO:0007041,GO:0008047,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010390,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0016043,GO:0016192,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032268,GO:0032269,GO:0032446,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033523,GO:0033554,GO:0034641,GO:0035561,GO:0035563,GO:0036211,GO:0042393,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0043900,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045739,GO:0045893,GO:0045935,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050688,GO:0050691,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051338,GO:0051340,GO:0051347,GO:0051348,GO:0051352,GO:0051438,GO:0051444,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051865,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097677,GO:0098772,GO:0140096,GO:1900180,GO:1900182,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901664,GO:1901666,GO:1902680,GO:1902965,GO:1902966,GO:1903320,GO:1903321,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1905666,GO:1905668,GO:2000112,GO:2000644,GO:2000646,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001032,GO:2001034,GO:2001141
EggNOG free text desc.regulation of NAD ADP-ribosyltransferase activity
EggNOG OGs2CTH7@1,2RGAW@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size972
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11050.683.1prot_H-paniculata_contig11050.683.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11050 3233..5283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928812.7501829-UTR-H-paniculata_contig11050:3172..32321622928812.7501829-UTR-H-paniculata_contig11050:3172..3232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11050 3173..3232 +
1691480629.71749-UTR-H-paniculata_contig11050:3172..32321691480629.71749-UTR-H-paniculata_contig11050:3172..3232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11050 3173..3232 +
1622928812.8013747-UTR-H-paniculata_contig11050:5283..58111622928812.8013747-UTR-H-paniculata_contig11050:5283..5811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11050 5284..5811 +
1691480629.7530682-UTR-H-paniculata_contig11050:5283..58111691480629.7530682-UTR-H-paniculata_contig11050:5283..5811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11050 5284..5811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928812.7685418-CDS-H-paniculata_contig11050:3232..33651622928812.7685418-CDS-H-paniculata_contig11050:3232..3365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11050 3233..3365 +
1691480629.7316132-CDS-H-paniculata_contig11050:3232..33651691480629.7316132-CDS-H-paniculata_contig11050:3232..3365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11050 3233..3365 +
1622928812.7822225-CDS-H-paniculata_contig11050:5032..52831622928812.7822225-CDS-H-paniculata_contig11050:5032..5283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11050 5033..5283 +
1691480629.7400796-CDS-H-paniculata_contig11050:5032..52831691480629.7400796-CDS-H-paniculata_contig11050:5032..5283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11050 5033..5283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11050.683.1

>prot_H-paniculata_contig11050.683.1 ID=prot_H-paniculata_contig11050.683.1|Name=mRNA_H-paniculata_contig11050.683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MPTPLVNSPVGGRDGTGANYVVDFSRMMQVNLKTQFSRPIRRNVAFNASC
RESWSWMNGSRWEPIPLFVCLQLVAARDYRREQSTPVHVGDERRLPRRQE
PTANPLNRMHTYLVQPANLTLMVQDPA*
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mRNA from alignment at H-paniculata_contig11050:3173..5811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11050.683.1 ID=mRNA_H-paniculata_contig11050.683.1|Name=mRNA_H-paniculata_contig11050.683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2639bp|location=Sequence derived from alignment at H-paniculata_contig11050:3173..5811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGATCGATTATGATCCATTCGCCAGCTCGACTGTGGAGACGGGTTT
TTTGAGCGGCATGCCTACGCCGTTGGTGAATTCTCCGGTGGGGGGCCGGG
ACGGTACGGGAGCAAATTATGTTGTAGACTTTTCCAGGATGATGCAAGTC
AACTTGAAGACGCAATTCTCTCGACCGATCCGGAGAAACGTAGGTGTGTG
CGAGAAATTGGGGGATGACCTGAGTCTGTTTCGGGGGGAGGGGATTGTCA
AACTTTTCGCCACAGTTTGTATGTTGAACTAAGTTAAGTATGGAAGCATC
GGTAAAGGTTTTTGCCTCAGCCTTCCGGGTGTTAAAAAAAAATAAATGTT
GAACTAAGATCCGGCGCTAATGTAGTGGACTCTGTTGTATCCCATGTTGA
GGTTATCTAGCTAACCTCAACAGTAATTGTACATTATATCAGCAAAAATC
AACTCACGTGCTGCATGCCGAGGTAGTTGATCCAGTGGCTATGCACTCTC
GAGAGGGCGGAGCTGTGTTCCCAAGAGGGATTTTATTTTTTCCCAATGGA
TGATGACCAATCGCTCTCTTCCTTCGTTGGTACTTTTTGTCAAATGTGAT
GTGGCTCGAGAAGGTCAATTTTTTTATGAATTTTCCATGTGTGTACGACT
ATAATGTCATACTTTTTCGCCCATCGCCTTTGTTTCGCAATCCCGAGCTT
CAGGGGCTAGTTTATCGCTCCATTGAACGTTCCCCAGTTGACTCGTTGGT
CTCCTTCTGTGTTCGGGGGACGAGGGGGTGACGCGACTGTCTCACTCTTT
AACGCCTCATTCGCGAATTAACCCACTAGTCCCAGTTGGTAGATCTGTAA
ACGCTCACGTGGAAACTACAGCGTACACATTCGTGTTTTAAGTTAACGCA
GCTGACGTCGAATTAATCTTAGCTGCGTATATGTATCTGCATATTTAAGT
AAAATTGGGAGTATTAGAGGGGATGATTCGAATATGGTTCGGAAATAGAT
GCTTGATAACAATCATAAGGGAAGAAGGAGGGAGGCGTAGGGCAAGTGAT
GAGTCATTTTCCATACTGCTGAGTGATGGCTGTATCCACAAATCGACCAA
ATTAGCGGGGTTTATCCGTACGCTCCAATCGCAACATTCTGGGTCATGCC
GATGATGATACATTGTTTCTTTTACTCTGTGAATACGATCATGTGTAGCA
GGGGTCTACTTTGTGACCAACGGGGTTTTGATTAAAGTCATGGTGTAAGG
TGACGGATAAACAAAAGTATCACCTGCCGCTGTTGTTTTCGATACTTATC
CTACAGGATACATGAATTAGTATTTTTTTGTCATGAACCCGAGCGTGTCT
AAAGCCAATTACTGTACCCTGAAAATATCATTGGTTCCTTTGCTATGTAT
ACCCGAATCTGTCTCTCTTTCCTTACCCTGTCATTATCACCACTGATCAA
TTCGTGCATGTACCCGAACTTGTCCTGTACTCGAATCACATGTTTGATTT
CTTTTCCGTACCCAAGCGGGTCTGAACGCTTTGTACTTGTGTTTCTGTCC
TGTCTCGTGTACCCAGACGTGTCTTCCGTGTATATTGTACCTGAACGATG
TTTTCGACGCCGTGTTCTGCACCCGCATCTGTCTCAAGTGTTCAATGCCC
CGTGACCCAGACGTATCTAAAACGCCTTCCATGTATATTGCACCCGAACG
ATGTTTTCGATGCCGTGTTCTGTACCTGGATTCTTCTAAAAACGTCCAAC
CCCGCATGATGCGTCCTTTATCCTGTATCCACATGTGTCTAAAATAACCC
TGTATTTTGTACCCGAACAGTGTTTTCGATGCCGTGTTTTGTACCCGAAC
TCGTCTACAGCGTTCAACGCCTCGTGCCGTGAGTCATGGTCTTGGATGAA
CGGGTCCAGATGGGAGCCAATACCGTTGTTCGTGTGCCTTCAACTGGTCG
CGGCGCGCGACTATCGTCGAGAGCAATCTACGCCCGTGCACGTGGGGGAT
GAACGTAGGTTACCACGAAGACAAGAACCAACAGCTAACCCATTAAACAG
AATGCACACCTATCTTGTTCAACCAGCCAACTTAACCCTCATGGTACAGG
ACCCTGCCTAGAAATGGTGCCCTCCAGGAAATTTTGAATATATATACAAG
GCATACGCGAAGGTACAGGGGTCAGGGCTGTGAGATATGTTTTTTGGTAA
TACCAGATTTACTGCCCATTTTGCAAGGCGATTGAAGGGAAGGCCATTGA
ACATCTACTGCTTGAATGTAGTAGGAGGGCAAAGGGTCGCAAAGTTTGGT
TGGGCGATCTGATCGCGGAGGCTAACTCACTTGTGAGACGCAATCAGAAC
GGTCGTGCTAGAGTCAAGAGTGTTGCCTTACTCCTCGGCGGGGAACGTGA
CGGAGAGAGGTTTATCTGGCTGGACTTGGTCATCGGAATATCGAGCGTCA
GCTCTGCCATCCAGAGGGGCTGACACACCTAACTCGGTTGCGGATGGAGA
AATTCGGATGTGTGCAAGTTGCCGGTCGTCCGGGTTTTGTGCTGCGACGC
CGGAACTCCATTTTTCACCACGGACCTACGCCCGAACGGGTAGGGTAGCT
CGTGAACTGAGCATGACTGGATGTCTAGCCAGAGGTCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig11050:3173..5811+

>mRNA_H-paniculata_contig11050.683.1 ID=mRNA_H-paniculata_contig11050.683.1|Name=mRNA_H-paniculata_contig11050.683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig11050:3173..5811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTACGCCGTTGGTGAATTCTCCGGTGGGGGGCCGGGACGGTACGGG
AGCAAATTATGTTGTAGACTTTTCCAGGATGATGCAAGTCAACTTGAAGA
CGCAATTCTCTCGACCGATCCGGAGAAACGTAGATGCCTACGCCGTTGGT
GAATTCTCCGGTGGGGGGCCGGGACGGTACGGGAGCAAATTATGTTGTAG
ACTTTTCCAGGATGATGCAAGTCAACTTGAAGACGCAATTCTCTCGACCG
ATCCGGAGAAACGTAGCGTTCAACGCCTCGTGCCGTGAGTCATGGTCTTG
GATGAACGGGTCCAGATGGGAGCCAATACCGTTGTTCGTGTGCCTTCAAC
TGGTCGCGGCGCGCGACTATCGTCGAGAGCAATCTACGCCCGTGCACGTG
GGGGATGAACGTAGGTTACCACGAAGACAAGAACCAACAGCTAACCCATT
AAACAGAATGCACACCTATCTTGTTCAACCAGCCAACTTAACCCTCATGG
TACAGGACCCTGCCTAGCGTTCAACGCCTCGTGCCGTGAGTCATGGTCTT
GGATGAACGGGTCCAGATGGGAGCCAATACCGTTGTTCGTGTGCCTTCAA
CTGGTCGCGGCGCGCGACTATCGTCGAGAGCAATCTACGCCCGTGCACGT
GGGGGATGAACGTAGGTTACCACGAAGACAAGAACCAACAGCTAACCCAT
TAAACAGAATGCACACCTATCTTGTTCAACCAGCCAACTTAACCCTCATG
GTACAGGACCCTGCCTAG
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