mRNA_H-paniculata_contig25081.6824.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25081.6824.1
Unique NamemRNA_H-paniculata_contig25081.6824.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: A0A6H5K4K8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.880e-8
Identity = 33/110 (30.00%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:    4 AWSIFEDWFRDTKSGERTRVKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTAKREMDLEDESGK 333
            AWS+  +W   T   E+T + +  E + + P E P  F AR   ++  MK +G++ +E+ + H IV  L   + I +  +L+   +S  ++E  VRTA     +  E GK
Sbjct:   23 AWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILVDPTISRAKVENVVRTAYANKVMMKELGK 132
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BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: A0A6H5JQJ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ2_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.350e-8
Identity = 29/98 (29.59%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:    4 AWSIFEDWFRDTKSGERTRVKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTA 297
            AWS+  +W   T   E+T + +  E + + P E P  F AR   ++  MK +G++ +E+ + H IV  L  ++ I +  +L    +S  ++E  VR A
Sbjct:   23 AWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHKYDIERESILADPTISRAKVENVVRAA 120
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BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: A0A6H5JQ49_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ49_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.000e-7
Identity = 32/110 (29.09%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    4 AWSIFEDWFRDTKSGERTRVKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTAKREMDLEDESGK 333
            AWS+  +W   T   E+T + +  E + + P E P  F AR   ++  MK +G++ +E+ + H IV  L   + I +  +L    +S  ++E  VR A     +  E GK
Sbjct:   23 AWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANKVMMKELGK 132
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BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: A0A6H5JS28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS28_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.120e-7
Identity = 32/110 (29.09%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    4 AWSIFEDWFRDTKSGERTRVKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTAKREMDLEDESGK 333
            AWS+  +W   T   E+T + +  E + + P E P  F AR   ++  MK +G++ +E+ + H IV  L   + I +  +L    +S  ++E  VR A     +  E GK
Sbjct:   23 AWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANKVMMKELGK 132
[Close]
BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.350e-7
Identity = 32/110 (29.09%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    4 AWSIFEDWFRDTKSGERTRVKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTAKREMDLEDESGK 333
            AWS+  +W   T   E+T + +  E + + P E P  F AR   ++  MK +G++ +E+ + H IV  L   + I +  +L    +S  ++E  VR A     +  E GK
Sbjct:  155 AWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANKVMMKELGK 264
[Close]
BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: A0A6H5JNE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.370e-7
Identity = 32/110 (29.09%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    4 AWSIFEDWFRDTKSGERTRVKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTAKREMDLEDESGK 333
            AWS+  +W   T   E+T + +  E + + P E P  F AR   ++  MK +G++ +E+ + H IV  L   + I +  +L    +S  ++E  VR A     +  E GK
Sbjct:  210 AWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANKVMMKELGK 319
[Close]
BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.420e-7
Identity = 32/110 (29.09%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    4 AWSIFEDWFRDTKSGERTRVKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTAKREMDLEDESGK 333
            AWS+  +W   T   E+T + +  E + + P E P  F AR   ++  MK +G++ +E+ + H IV  L   + I +  +L    +S  ++E  VR A     +  E GK
Sbjct:  155 AWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANKVMMKELGK 264
[Close]
BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.500e-7
Identity = 32/110 (29.09%), Postives = 54/110 (49.09%), Query Frame = 1 
Query:    4 AWSIFEDWFRDTKSGERTRVKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTAKREMDLEDESGK 333
            AWS+  +W   T   E+T + +  E + + P E P  F AR   ++  MK +G++ +E+ + H IV  L   + I +  +L    +S  ++E  VR A     +  E GK
Sbjct:  155 AWSVIHEWLLPTLDAEKTLLVRRLETIEMHPGEDPKLFFARVDGVINIMKAVGIEKSERAIVHIIVRQLAHEYDIERKSILADPTISRAKVENVVRAAYANKVMMKELGK 264
[Close]
BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: A0A6P5SZJ2_PRUAV (uncharacterized protein LOC110761055 n=2 Tax=Prunus avium TaxID=42229 RepID=A0A6P5SZJ2_PRUAV)

HSP 1 Score: 54.3 bits (129), Expect = 5.080e-6
Identity = 36/116 (31.03%), Postives = 60/116 (51.72%), Query Frame = 1 
Query:    1 GAWSIFEDWFRDTKSGERTR---VKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEE---GVRTAKREMDLEDESG 330
            GAW I    FR  K     +   ++ +FE L +   E+ +++LAR F IV  +K +G D+TEK +  +++ SL  R+     ++   ++L T  +EE    V+   +  DL DE G
Sbjct:  109 GAWEILRREFRGDKKVRAVKLQAIRADFEYLRMNDVESLDDYLARFFEIVNNLKSLGEDVTEKRIVQKLLMSLSRRYKSIMSIIEETRDLDTIRVEEILASVKVYDKREDLHDEKG 224
[Close]
BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Match: UPI00051177EB (uncharacterized protein LOC103929663 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI00051177EB)

HSP 1 Score: 52.4 bits (124), Expect = 3.330e-5
Identity = 36/117 (30.77%), Postives = 60/117 (51.28%), Query Frame = 1 
Query:    1 GAWSIFEDWFRDTKSGERTR---VKKEFENLAVQPNETPNEFLARSFVIVERMKEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTAK---REMDLEDESGK 333
            GAW I    FR  K     +   ++  FE L +   E+ +++LAR F IV  +K +G D+TEK +  +++ SL  R+     ++   ++L T  +EE + + K   +  DL DE  K
Sbjct:  103 GAWEILRREFRGNKKVRAVKLQAIRAGFEYLRMNDAESLDDYLARFFEIVNNLKSLGEDVTEKRIVQKLLMSLSRRYKSIVSIIEETRDLDTIRIEEVLASVKVYDKREDLHDERDK 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25081.6824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K4K8_9PHAE1.880e-830.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQJ2_9PHAE3.350e-829.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ49_9PHAE4.000e-729.09Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS28_9PHAE4.120e-729.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIP6_9PHAE4.350e-729.09CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JNE4_9PHAE4.370e-729.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A7_9PHAE4.420e-729.09CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE4.500e-729.09CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6P5SZJ2_PRUAV5.080e-631.03uncharacterized protein LOC110761055 n=2 Tax=Prunu... [more]
UPI00051177EB3.330e-530.77uncharacterized protein LOC103929663 n=1 Tax=Pyrus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25081contigH-paniculata_contig25081:2893..3327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size435
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929737.3476317-CDS-H-paniculata_contig25081:2892..33271622929737.3476317-CDS-H-paniculata_contig25081:2892..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25081 2893..3327 +
1691480989.4747581-CDS-H-paniculata_contig25081:2892..33271691480989.4747581-CDS-H-paniculata_contig25081:2892..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25081 2893..3327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25081.6824.1prot_H-paniculata_contig25081.6824.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25081 2893..3327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25081.6824.1

>prot_H-paniculata_contig25081.6824.1 ID=prot_H-paniculata_contig25081.6824.1|Name=mRNA_H-paniculata_contig25081.6824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
GAWSIFEDWFRDTKSGERTRVKKEFENLAVQPNETPNEFLARSFVIVERM
KEIGVDMTEKEVHHQIVCSLPDRFAIAKHMMLMKKNLSTKELEEGVRTAK
REMDLEDESGKGGNGHALFAAAAASGGGNRGKHQQHQQRQQQQP*
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mRNA from alignment at H-paniculata_contig25081:2893..3327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25081.6824.1 ID=mRNA_H-paniculata_contig25081.6824.1|Name=mRNA_H-paniculata_contig25081.6824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig25081:2893..3327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCATGGAGTATTTTTGAAGACTGGTTCAGAGACACAAAATCTGGAGA
ACGTACTAGAGTTAAAAAGGAATTTGAGAACTTGGCAGTACAGCCAAATG
AGACACCCAATGAATTTCTGGCTAGGTCTTTTGTCATTGTAGAGCGGATG
AAGGAGATTGGTGTTGACATGACAGAGAAAGAAGTTCACCATCAGATCGT
TTGTTCCCTGCCCGATCGTTTCGCCATTGCGAAACACATGATGCTTATGA
AAAAGAATTTGTCTACGAAAGAACTGGAAGAAGGGGTCCGAACTGCCAAA
CGGGAGATGGACCTCGAGGACGAGTCAGGCAAGGGGGGAAACGGGCATGC
CCTTTTTGCCGCTGCCGCAGCAAGCGGCGGCGGTAATCGTGGCAAACATC
AGCAGCATCAGCAGCGCCAGCAACAGCAGCCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25081:2893..3327+

>mRNA_H-paniculata_contig25081.6824.1 ID=mRNA_H-paniculata_contig25081.6824.1|Name=mRNA_H-paniculata_contig25081.6824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig25081:2893..3327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCATGGAGTATTTTTGAAGACTGGTTCAGAGACACAAAATCTGGAGA
ACGTACTAGAGTTAAAAAGGAATTTGAGAACTTGGCAGTACAGCCAAATG
AGACACCCAATGAATTTCTGGCTAGGTCTTTTGTCATTGTAGAGCGGATG
AAGGAGATTGGTGTTGACATGACAGAGAAAGAAGTTCACCATCAGATCGT
TTGTTCCCTGCCCGATCGTTTCGCCATTGCGAAACACATGATGCTTATGA
AAAAGAATTTGTCTACGAAAGAACTGGAAGAAGGGGTCCGAACTGCCAAA
CGGGAGATGGACCTCGAGGACGAGTCAGGCAAGGGGGGAAACGGGCATGC
CCTTTTTGCCGCTGCCGCAGCAAGCGGCGGCGGTAATCGTGGCAAACATC
AGCAGCATCAGCAGCGCCAGCAACAGCAGCCATAGGGGGCATGGAGTATT
TTTGAAGACTGGTTCAGAGACACAAAATCTGGAGAACGTACTAGAGTTAA
AAAGGAATTTGAGAACTTGGCAGTACAGCCAAATGAGACACCCAATGAAT
TTCTGGCTAGGTCTTTTGTCATTGTAGAGCGGATGAAGGAGATTGGTGTT
GACATGACAGAGAAAGAAGTTCACCATCAGATCGTTTGTTCCCTGCCCGA
TCGTTTCGCCATTGCGAAACACATGATGCTTATGAAAAAGAATTTGTCTA
CGAAAGAACTGGAAGAAGGGGTCCGAACTGCCAAACGGGAGATGGACCTC
GAGGACGAGTCAGGCAAGGGGGGAAACGGGCATGCCCTTTTTGCCGCTGC
CGCAGCAAGCGGCGGCGGTAATCGTGGCAAACATCAGCAGCATCAGCAGC
GCCAGCAACAGCAGCCATAG
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