mRNA_H-paniculata_contig2508.6822.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2508.6822.1
Unique NamemRNA_H-paniculata_contig2508.6822.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: D7G880_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G880_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 2.290e-59
Identity = 261/316 (82.59%), Postives = 280/316 (88.61%), Query Frame = 2 
Query:  173 MFVKKDTRKIPEIL---DDEPEELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGALSATPLKHLNLGRNQLKSLPSELGKVGTLETLWVDDNAILDFPQSILALRRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERLEAAWGRVDVLTGKLDPDTIGSPLKAEVIVRGNPFADAATA--NKHGHIIEEVS---MDESR 1096
            MFVKKDTRKIP+IL    DE EELHLGRRSSEFV NG+KVVCSSRH  +LQ LQ++SLYDNML++VKGIGALSATPLKHLNLGRNQLKSLP ELGKVGTLETLWVDDNAI DFP+S+L L+RL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +EAAWGR D +TGKLDP T+ SP K EV++RGNP AD   A  +  G+  E+     MDE+R
Sbjct:    1 MFVKKDTRKIPDILADEGDEREELHLGRRSSEFVSNGIKVVCSSRHIPRLQKLQKLSLYDNMLSHVKGIGALSATPLKHLNLGRNQLKSLPPELGKVGTLETLWVDDNAITDFPRSVLQLKRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVEAAWGRADPVTGKLDPATVDSPRKTEVVIRGNPIADPKQAGGSASGYTAEQDMTSLMDETR 316
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: A0A835YNM3_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM3_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.550e-30
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 2 
Query:  173 MFVKKDTRKIPEIL---DDEPEELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGALS--ATPLKHLNLGRNQLKSLPSELGKVGTLETLWVDDNAILDFPQSILALRR 529
            MF+KKD RKI EIL   +D  EEL LGRRS EF   G++V+CS  +   L  L+ +S+YDN+LT+++G+G L   AT L HLNLGRNQL++LP ELG V TLETLW+DDN + +FP  +  L R
Sbjct:    1 MFIKKDLRKINEILADREDSREELRLGRRSGEF-KGGLRVICSPHNIPALAQLRSLSVYDNLLTSIEGVGLLGNGATALLHLNLGRNQLRTLPQELGLVSTLETLWLDDNLLDEFPLPVTELTR 123
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: A0A485L9Z5_9STRA (Aste57867_17909 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9Z5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.520e-22
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = 2 
Query:  173 MFVKKDTRKIPEIL---DDEPEELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGALSATPLKHLNLGRNQLKSLPSELGKVGTLETLWVDD 484
            MFV KD RKIPEIL   +DE E++ LGRRS+EF  N + V+C+  +   L  LQ++SLYDN L +++ IG LS TPL  L+LG+NQL+ LP E+G + TL+ LWV +
Sbjct:    1 MFVVKDLRKIPEILQDPEDEREQMRLGRRSAEFSGN-LDVLCTPSNVTALTKLQKLSLYDNQLVSIERIGLLSKTPLCILDLGQNQLERLPDEIGSITTLKELWVSN 106
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: W4FL85_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FL85_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.810e-20
Identity = 52/105 (49.52%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  173 MFVKKDTRKIPEILDD---EPEELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGALSATPLKHLNLGRNQLKSLPSELGKVGTLETLWV 478
            MFV KD RK+PEI+ D   + E+L LGRRS+EF  N ++++CS  +      LQ++SLYDN L+++ GIG LS+TPL  L+LG+NQL  LP E+G +  L+ LW+
Sbjct:    1 MFVVKDLRKVPEIVADPADDREQLRLGRRSTEFDGN-LRILCSPVNIPAFSRLQKLSLYDNQLSSIDGIGLLSSTPLSILDLGQNQLDHLPHEIGSLRHLKELWL 104
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: A0A6G0WAD8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WAD8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.450e-20
Identity = 51/118 (43.22%), Postives = 80/118 (67.80%), Query Frame = 2 
Query:  173 MFVKKDTRKIPEILDDEP---EELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGALSATPLKHLNLGRNQLKSLPSELGKVGTLETLWVDDNAILDFPQSIL 517
            MFV KD RKIP+I+ D+    E+L LGRR++EF    + ++C+  +      LQ++SLYDN L +++ IG L+ TPL  L+LG+NQL+SLP E+G +  L+ LWV +N ++   +++L
Sbjct:    1 MFVVKDLRKIPDIVRDDNDTREQLRLGRRAAEF-QGDLSILCTPSNVAAFSKLQKLSLYDNNLHSIERIGLLAETPLAILDLGQNQLESLPDEMGTLVHLKELWVTNNKLMTISEAVL 117
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: W4FJA0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJA0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.540e-18
Identity = 57/145 (39.31%), Postives = 82/145 (56.55%), Query Frame = 2 
Query:  173 MFVKKDTRKIPEILDD---EPEELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGALSATPLKHLNLGRNQLKSLPSE-------------------------LGKVGTLETLWVDDNAILDFPQSILAL 523
            MFV KD RK+PEI+ D   + E+L LGRRS+EF  N ++++CS  +      LQ++SLYDN L+++ GIG LS+TPL  L+LG+NQL  LP E                         +G +  L+ LW+ +N +   P S+L L
Sbjct:    1 MFVVKDLRKVPEIVADPADDREQLRLGRRSTEFDGN-LRILCSPVNIPAFSRLQKLSLYDNQLSSIDGIGLLSSTPLSILDLGQNQLDHLPHEVHSMQPRIGNSCNLTPILVLGRIVQIGSLRHLKELWLSNNWLTSVPDSVLTL 144
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: A0A3R7BQF1_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BQF1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.520e-18
Identity = 60/156 (38.46%), Postives = 86/156 (55.13%), Query Frame = 2 
Query:  140 YARYFSQARCLMFVKKDTRKIPEILDD---EPEELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGALSATPLKHLNLGRNQLKSLPSE-------------------------LGKVGTLETLWVDDNAILDFPQSILAL 523
            +  Y+S     MFV KD RK+PEI+ D   + E+L LGRRS+EF  N ++++CS  +      LQ++SLYDN LT++ GIG LS+TPL  L+LG+NQL  LP E                         +G +  L+ LW+ +N +   P S+L L
Sbjct:  351 WGAYYSN----MFVVKDLRKVPEIVADPADDREQLRLGRRSTEFDGN-LRILCSPVNIPAFSRLQKLSLYDNQLTSIDGIGLLSSTPLSILDLGQNQLDHLPHEVHSMQPRIGNSCNLTPILVLGRIVQIGSLRHLKELWLSNNWLTSVPDSVLTL 501
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: A0A024TAP0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAP0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.140e-18
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 2 
Query:  173 MFVKKDTRKIPEILDDEP---EELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGALSATPLKHLNLGRNQLKSLPSELGKVGTLETLWVDD 484
            MFV KD RK+ EI+ D     E++ LGRRSSEF  N ++++C+  +      L ++SLYDN LT+++GIG L +TPL  L+LG+N+L+ LP E+G +  L+ LW+ +
Sbjct:    1 MFVVKDLRKVAEIVADPKDAREQMRLGRRSSEFQGN-LRILCTPANIPAFSRLTKLSLYDNQLTSIEGIGLLESTPLSILDLGQNRLEHLPDEIGCLRHLKELWLSN 106
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: A0A5A8DB09_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DB09_CAFRO)

HSP 1 Score: 92.0 bits (227), Expect = 8.540e-17
Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 2 
Query:  173 MFVKKDTRKIPEIL---DDEPEELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGAL-SATPLKHLNLGRNQLKSLPSELGKVGTLETLWVDDNAILDFPQSILALRRL 532
            MF+K+DTRK+PEIL   DD  +EL LGRR +EF     +++    +  +L NL+ +SLY N L  +     L   T L  LNLG N + +LP+ +G + +L  LWV+DN + + P  +  L +L
Sbjct:    1 MFIKRDTRKVPEILVDEDDSRKELKLGRREAEF-GGSTEMLLRPANAARLANLEYLSLYHNKLARLDHFETLCDCTALTGLNLGNNAISALPAAIGDLASLRRLWVEDNCLGELPDEVCRLEKL 123
[Close]
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Match: A0A7S2LF17_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LF17_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 6.470e-16
Identity = 54/118 (45.76%), Postives = 69/118 (58.47%), Query Frame = 2 
Query:  173 MFVKKDTRKIPEIL------------DDEPEELHLGRRSSEFVPNGVKVVCSSRHTGKLQNLQRMSLYDNMLTNVKGIGALSA-TPLKHLNLGRNQLKSLPSELGKVG-TLETLWVDD 484
            MFVKKD RKIPEIL            DD   EL L RR  EF    + V+C +++T    NL ++SLYD  L N+KGIG L   + L+ LNLGRN +K LP E   +  +L+ LW+DD
Sbjct:    1 MFVKKDLRKIPEILSSCDRSTEDDLTDDPLTELKLARRQGEF-HGTLNVLCDTQYTNHFSNLTKLSLYDCGLVNLKGIGMLGEHSRLEELNLGRNMIKELPPEFALLAESLKVLWLDD 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2508.6822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G880_ECTSI2.290e-5982.59Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835YNM3_9STRA3.550e-3054.84Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A485L9Z5_9STRA4.520e-2252.34Aste57867_17909 protein n=1 Tax=Aphanomyces stella... [more]
W4FL85_9STRA1.810e-2049.52Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WAD8_9STRA3.450e-2043.22Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4FJA0_9STRA1.540e-1839.31Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A3R7BQF1_9STRA2.520e-1838.46Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A024TAP0_9STRA6.140e-1844.86Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A5A8DB09_CAFRO8.540e-1739.52Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S2LF17_9STRA6.470e-1645.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2508contigH-paniculata_contig2508:2..5748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue4.9e-51
Seed eggNOG ortholog2880.D7G880
Preferred nameLRRC17
KEGG rclassRC00295
KEGG koko:K01768,ko:K19613
KEGG ReactionR00089,R00434
KEGG Pathwayko00230,ko02025,ko04014,ko04113,ko04213,map00230,map02025,map04014,map04113,map04213
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
GOsGO:0001501,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0005575,GO:0005576,GO:0005615,GO:0007275,GO:0008150,GO:0009888,GO:0032501,GO:0032502,GO:0044421,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048539,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051239,GO:0051241,GO:0060348,GO:0065007,GO:1902105,GO:1902106,GO:1903706,GO:1903707,GO:2000026
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-12_001130.1
EC4.6.1.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons7
Model size1525
Cds size927
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.8710594-UTR-H-paniculata_contig2508:1..4271622929736.8710594-UTR-H-paniculata_contig2508:1..427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2508 2..427 -
1691480989.2292533-UTR-H-paniculata_contig2508:1..4271691480989.2292533-UTR-H-paniculata_contig2508:1..427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2508 2..427 -
1622929737.010935-UTR-H-paniculata_contig2508:5576..57481622929737.010935-UTR-H-paniculata_contig2508:5576..5748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2508 5577..5748 -
1691480989.3168664-UTR-H-paniculata_contig2508:5576..57481691480989.3168664-UTR-H-paniculata_contig2508:5576..5748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2508 5577..5748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.8868947-CDS-H-paniculata_contig2508:427..6431622929736.8868947-CDS-H-paniculata_contig2508:427..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 428..643 -
1691480989.244812-CDS-H-paniculata_contig2508:427..6431691480989.244812-CDS-H-paniculata_contig2508:427..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 428..643 -
1622929736.8985565-CDS-H-paniculata_contig2508:1038..12341622929736.8985565-CDS-H-paniculata_contig2508:1038..1234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 1039..1234 -
1691480989.254174-CDS-H-paniculata_contig2508:1038..12341691480989.254174-CDS-H-paniculata_contig2508:1038..1234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 1039..1234 -
1622929736.9127421-CDS-H-paniculata_contig2508:1613..17321622929736.9127421-CDS-H-paniculata_contig2508:1613..1732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 1614..1732 -
1691480989.272133-CDS-H-paniculata_contig2508:1613..17321691480989.272133-CDS-H-paniculata_contig2508:1613..1732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 1614..1732 -
1622929736.9331565-CDS-H-paniculata_contig2508:1995..20381622929736.9331565-CDS-H-paniculata_contig2508:1995..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 1996..2038 -
1691480989.2830172-CDS-H-paniculata_contig2508:1995..20381691480989.2830172-CDS-H-paniculata_contig2508:1995..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 1996..2038 -
1622929736.952925-CDS-H-paniculata_contig2508:2774..29351622929736.952925-CDS-H-paniculata_contig2508:2774..2935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 2775..2935 -
1691480989.2915747-CDS-H-paniculata_contig2508:2774..29351691480989.2915747-CDS-H-paniculata_contig2508:2774..2935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 2775..2935 -
1622929736.972898-CDS-H-paniculata_contig2508:3371..34861622929736.972898-CDS-H-paniculata_contig2508:3371..3486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 3372..3486 -
1691480989.299849-CDS-H-paniculata_contig2508:3371..34861691480989.299849-CDS-H-paniculata_contig2508:3371..3486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 3372..3486 -
1622929736.9889178-CDS-H-paniculata_contig2508:5499..55761622929736.9889178-CDS-H-paniculata_contig2508:5499..5576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 5500..5576 -
1691480989.308019-CDS-H-paniculata_contig2508:5499..55761691480989.308019-CDS-H-paniculata_contig2508:5499..5576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2508 5500..5576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2508.6822.1prot_H-paniculata_contig2508.6822.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2508 428..5576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2508.6822.1

>prot_H-paniculata_contig2508.6822.1 ID=prot_H-paniculata_contig2508.6822.1|Name=mRNA_H-paniculata_contig2508.6822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MFVKKDTRKIPEILDDEPEELHLGRRSSEFVPNGVKVVCSSRHTGKLQNL
QRMSLYDNMLTNVKGIGALSATPLKHLNLGRNQLKSLPSELGKVGTLETL
WVDDNAILDFPQSILALRRLQELRLSGNRIVEVPEEISSLSELRVLALDN
NDLKTVPKSIGTLLHLQSLLLRQNELEQLPEEMGELLDMRNLCISSNHLS
SLPPSLGKLLLLEFLYANGNRLGSLPEELSELVNLKKVNLSNNAIVTLPE
RLEAAWGRVDVLTGKLDPDTIGSPLKAEVIVRGNPFADAATANKHGHIIE
EVSMDESR*
back to top

mRNA from alignment at H-paniculata_contig2508:2..5748-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2508.6822.1 ID=mRNA_H-paniculata_contig2508.6822.1|Name=mRNA_H-paniculata_contig2508.6822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5747bp|location=Sequence derived from alignment at H-paniculata_contig2508:2..5748- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGAAAACAAAAGGCAATTTTACAACTTTTGAAAATTCACTTGGCGGGA
ATGTTGAACCTTACACAGCTCCTGAAACATGGGAATCTAGCACCTATTGA
AAGGCGAGGTAATCTCCATACCTGTGAAAATTGACGGTGTACGCTAGATA
CTTCAGTCAAGCGAGGTGCCTGATGTTCGTCAAGAAGGACACGCGTAAGA
TTCCAGAAATATTGGACGATGAACCGGAAGAGCTACATTTAGGGCGGAGG
TATGCTACCTTAATGTCCGTCGCTCCCAGTACAGCACAGCCGTAGACCCA
GTCTGCATTAGGAGTAGCTTGTATATTGAAACTTGGTCACACATTGAATA
GAAATATAGTGCAAGTATCGTTTCGCTGTGCTGTCTAATGCACTGTATTT
TATTGCACTGAATATGTGGTGTTTATAGTTTACGACAGGTGATGATGAAT
AACACCACCCTCAGCGCACGACGTTTCGCCACTATATTCATGCCTCTGCT
GGTGTTGCTCTGTTTTCTCGATTTTTTAACCACTACCGTGATATTGTAAC
ATACAAGTAATACCAAAGTTGTATTGATGGAAAGGTCTCGTCGACATCTA
TGGACGAACAAATTCCTTTGACAGTACATAAGCTTGCTTGTAGAGAACAA
TGACTTTCAGAAGAATCACGGGGAGTTGGTATAATCCTACGGCACGGCAT
AACCATTAACCGTTACTGGTACTCTTTACCTCCAGATCTGTACTGTTAGG
GGGAGCGATAGGGGTAGTCCACTGTTTCCGAGATTATTATTTTTACATTT
CAGACCTAACCGATTTATTTCAAATGAGCCAATCGGAAAGGCACATGCAA
AAACCCGCAACAACCGATCGAACTGAATTGAGGCAAGTTGGTCCGCATAA
CACACAAGAGGTATGGCTGAGCGCCGTGGACTATCTGAGCTTCTGCTTAG
TGCCGTCTGGGCCATTCCCCCGAACCCTGTGGGCAATACCGCGTTACCAG
CGAGTAAAACCGTGCCGACGGCAAGCGGTGCCGCAGTGCTTCGGACGACG
CCATACCATCTCTCTCCACAGCGCGTTTCAATTTCAGCGCAGCTTCATGC
TTTGAAGGACTTTTACCAGTTCTCGTTTTGACCATTTTGCGCGCTAGCTG
CTTACTTTTTTCTCACTTGGCCTGGTGCCGTGGTTTTTCGACGAGTGTCA
ACATTCGCTTATTGATGAGCACAGAAGGGGATGGGGCAGGTCTTGTCGGG
AAATCTGGTGTACTGCCTGTACTGAATGTTGTACTGCTGTACACCGACCA
CGAGGTGGCTTCTATCCCGCCAGCGACTATACCCGCCTGAAAAAAATGTG
CAATGTCACTCCCTTTTTTTGAAATCTCAGGAACGGTAGTCGATGGCCCA
AAACCGGTCCCAACGACCAAATCGAAAATTCCCTAATTGTTGGTTGTACG
TTACAGCTCAAAAATACGTAGTTGACTTAAGTATTAAACATTATATCGAG
CAAATCTTAGCTCTTAGATCGAACTGGCTAATGTCAATGTACTAAGTAAA
TGTCGACAGCTATGATCTAGTGCATGTGCAGTCGCGATTTTGAATGTGTC
TTATGTTGGTGACGCACGTCACGAAAATAGTGCATTTTAAAGATATTTCT
GTCCGTAGCTCGCTTATTTTTCGTTTAGTCAAAATCGCCACTGTACATGT
AGTAGTACTGGTCAGAGCGAATACAGCACAACAAATCGCGCACGATTCCT
CGCAGTTGACAAGAACTTCTACATCAAAGATCGCACAACTTGCAATGCGG
CCAAGTTTTTCGATACTAACTTCAAGTACAAAACTATGTAGAAAATAACT
CAGCATGACTTGGCGGCTACGCGTTTCTGTACTGATTTCAATTATAAAGC
CATATATATAAAAAAAATCGCTCCCCCTAACTGTCCTGTCGGTGTGCTAC
TATATTCGCCCATGTTGTTGATCAATCTCTGCGATACAGTATTCTGCTCT
GTGCTATGCTGTAGTGTAGGTGCCCATTCCATCACAGGAGAGAAGTCGAG
TTTGGTGACTGTGTACCCCAGACGTCACCTCGACGGAACTGACAGCCTGA
GGAACGTCCAGGGGTGGAAATTGTGGTCACTCGATTGACAAGCGGCCGAA
ATCCTGCACCAGCTTCTAGAGCGTTCTATATCTTGTTCCAACACTGGGGT
AACCATGATGTATCACATGCGCCAGTCTTCGTACTACTATATTGCCATAC
GCACTCCGCCAGGTCGTCAGAATTCGTGCCCAACGGCGTAAAGGTCGTTT
GCAGCAGCAGACACACCGGAAAGCTTCAAAATCTCCAGCGTATGTCGTTG
TACGACAATATGCTCACCAACGTGAAGGTAAGAAAAACTATAACTTGGTG
TGACTTCCGAGGGCATTTCTATCGTGTGGCAGATCTGGAAGGGCATTTTG
TTTCTTTCGTTTAGGCGTTGTGAAGAGGTGGTAGCCAGACAACGGCAGCG
AGCGGCACACCCGATTCTGTCTCGGGGGGATTTTTTTTTTCTTTAGATGA
ATGCTTAGCAAGTTCAGCCTATGGACTGCGCACTATATGTAACCGGCCGT
CGACAGCCGCGCCCACGCGTTTTGGTCATATCAACGTCGTTGGTTTTCAG
TTGCTATAGTCAACGAGGATGATGCTATGCAGAGCTCCAGGAACATAACA
CATAAGCCCCTGTTTTTTGTGCCGAAGGTAGAGTAGCCTCAGCTAGAACC
CTTCGCTCTGTGTTGCCGTGGCAATTTCTTGATTGCCTATTGACCTGCTT
CGGAAAAACACAGGGCATCGGAGCCCTCTCTGCGACTCCTCTGAAACATC
TCAACTTGGGCCGCAACCAACTGAAATCGCTTCCTTCTGAGCTGGGTAAA
GTGGGAACCCTGGAAACTCTTTGGGTTGACGACAACGCCATCCTTGACTT
CCCCCAGTCCATCCTCGCGCTCAGGTATGTGCGACACAAAGACAAAATGT
GCTGTAACACCGTTTTCGTCGTGTACACTTTCAAACGTCTGAACGTATGT
GGAAGATCGTACATCGCACCGCCGCGATGGGACCGCGAGGTGCTTCGGTT
TCGTCGATCAGGAAACCCGATCCTCAGCAAGTTTAGCTTAGATGTCCAAT
CAGGCCGTTTTGTTCCACACTTTTGAGAAGCACCTGCGCCTGCTAGCAGT
TTCGTCCAAACGGTTCTGACGTGTCCCGTGGTGCATGGCGAAGGTTTCGA
GTGGGGGCATTTCCAACTAAAATTGAACCCTTCCTGTCGTCAATAGACTC
TTAAGGTGTGTAATCACGGTTCAGTTTTTTCTGTGGATCCATCTTCACTT
TTTCAAAAGAGATTTACACGTCAAGAATGACCATGCTGTATACTCTACGC
TGGATACTGTAGATGATCACTTGGACGGACCATGACGGAGAACATTTCCA
AGTATGCGGATCAGCCGGGTTTATCTAGCCGATTTGGCTCGCCTCTCTTG
CTGAACCCCCTTCTACGCCTAAGGAAAGTACAGCCCTCGGACCCTCATCA
CGGACCAGGTCTCCTACTCGCATACTTCAGGGTTCACAAAAGTACGCTAC
ACGTTACCATAAATCTCACTCCGCTCATTCCTCGCCAGCTGCCGAAAGAT
CTGCCATCCATGCTACTAAAACACCTTCCTGGCACCACCTGTTATGCATA
CCGCTAGCAGGCGCCTGCAAGAGCTTCGGCTAAGTGGTAACCGGATAGTG
GAGGTGAGGTTATTGCCGCAGATTCCTAACCCTCGTCCTTCCTCGAAACG
TTGAGAAAGCACACACTGCAGGCATGCCATCATGTGTAGGGAAGAGGTGT
AAATATTCTTGGTGTTAGTGCTTTACCTTATGTTCGAGTAAATTATATTT
TGTTTTTAGCAATCTGCAACGCGTATAGTTTCAAACGTGAACAAGTTTTG
AAGAACCCGTCCTGCGCATTCCAGGTGAATTGATAACATTTCTTCCCCCT
GTGATGTGACTTCCAGGTGCCGGAGGAGATATCCTCTCTATCAGAGCTGC
GTGTGCTGGCCCTGGACAACAACGACCTCAAGACTGTTCCAAAATCCATC
GGCACACTATTACATCTCCAGTCTCTCTTGCTGAGGTTTGTGCCGTATTC
CACTGTTGCTGAGCGCGTGGGCATGACTGGTAGTGTAGTGGCGACGGGTT
TGATGGTGAATACATTATATAGCATTTTCACTGTCAACCAGTGTTGCGAC
CAATTGAACTTATTCCTTTGAAAGTCAGTCGCCCTGACGGAAAGCTAATG
GCCATGTTTCCATCTGTCATTGTAGATGTGCCCCACCTCTCATGGCCTGC
CCTGGCATGAGCGGACAGGGGGCTGCAAATACGCCACGCCGCTCGAAGAA
AATGAGCTGAGTGAAGCGAACTTGGCAAGAAAATCCTTACACTGTACCTC
GTTATTCGCCACCTTTCCAATTTCGTCCCGTGTGCGTGCTTGTCGCGTGT
GAACACTGTGACAGACAAAACGAGCTGGAGCAGTTGCCCGAAGAGATGGG
AGAGCTCCTAGACATGCGGAACCTCTGTATCAGCAGCAACCACCTTAGCT
CTCTTCCACCCTCGCTCGGCAAGCTGCTGCTGCTTGAGTTTCTCTACGCT
AATGGCAACCGCTTGGGATCTCTGCCCGAAGAGCTATCGGAGCTGGTGAA
CCTGAAGAAGGTGTAGCTCTTTTTTTTCCGGGTGCTTTTCGCGCTTGGCT
GGAGGGAGTAATGTTTTTTTGTCAGTGTTCCGTACACATTTACACTATTT
TTTCACGGTAGTGTTGTACAGGCTTTCTGTTGAGGCCGTGGTGGAGTTTT
GATGTCGCTGCCACATACCTGTTGTAAAGTCTAGAATCAATGAATAATAA
ACGATGCAAAGTTCCGTGTCCTTGCAAGTCGCTAGCTCACCCTCTCTCTT
TTTGTCAAATCGTACCACTCGCCAGCACACACTGACTTTTCATCTCAAGC
ATAACCTAATCTAGTTTCTGGCGCATTTCTGAATATCGTGCGATTTCATT
CCTTTTTCTTGTATCTCTTGTCCTGATCCCTTCTCTTTTGTCGTGACACC
AATAGGTGAACTTATCAAATAACGCCATAGTCACCCTGCCCGAAAGGTTG
GAAGCAGCGTGGGGGCGGGTCGATGTGTTGACTGGGAAACTAGACCCGGA
TACGATAGGATCGCCCTTGAAGGCGGAGGTCATCGTTCGCGGCAATCCGT
TTGCAGATGCAGCTACTGCTAACAAGCACGGACACATCATCGAGGAAGTT
TCGATGGACGAGTCTCGGTGATGAGACTGCAGAGTAAACGTCGTTGCCAT
TTTGAAGCTGGTGTGTTTTTGTGACACGACCATTTTTTGCAAGTTCTAAC
ATGATATTAGTTGAAGAAATGGTAAAGGTTTGAGTAATAGAAGATGGCGG
GGGACAGGTAGAGGGGGAGAAACGTACGTGGCGCTGAACTTGGCACAGCT
GGTAAAATGTTTTTATACCAGTGCATCACGATTATCTGTACTTGCCTTTT
ATGCGTATTTTTTACTCAGGGACGGATGGATCCCCCAATGTACAACCAAT
GCATCATGATGAAGATACGTGCATGCATCTCCACGGACCTGCGCCCGAAC
GGGTAGGGTAGCTCGTGTACTGAGCATGACTGGAAGTCTAGTCAGAGGTC
TTTTAGTAGGTGAAACTCCTACACTGCCTACTGGTTCGGCCGAACCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2508:2..5748-

>mRNA_H-paniculata_contig2508.6822.1 ID=mRNA_H-paniculata_contig2508.6822.1|Name=mRNA_H-paniculata_contig2508.6822.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at H-paniculata_contig2508:2..5748- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGTCAAGAAGGACACGCGTAAGATTCCAGAAATATTGGACGATGA
ACCGGAAGAGCTACATTTAGGGCGGAGATGTTCGTCAAGAAGGACACGCG
TAAGATTCCAGAAATATTGGACGATGAACCGGAAGAGCTACATTTAGGGC
GGAGGTCGTCAGAATTCGTGCCCAACGGCGTAAAGGTCGTTTGCAGCAGC
AGACACACCGGAAAGCTTCAAAATCTCCAGCGTATGTCGTTGTACGACAA
TATGCTCACCAACGTGAAGGTCGTCAGAATTCGTGCCCAACGGCGTAAAG
GTCGTTTGCAGCAGCAGACACACCGGAAAGCTTCAAAATCTCCAGCGTAT
GTCGTTGTACGACAATATGCTCACCAACGTGAAGGGCATCGGAGCCCTCT
CTGCGACTCCTCTGAAACATCTCAACTTGGGCCGCAACCAACTGAAATCG
CTTCCTTCTGAGCTGGGTAAAGTGGGAACCCTGGAAACTCTTTGGGTTGA
CGACAACGCCATCCTTGACTTCCCCCAGTCCATCCTCGCGCTCAGGGCAT
CGGAGCCCTCTCTGCGACTCCTCTGAAACATCTCAACTTGGGCCGCAACC
AACTGAAATCGCTTCCTTCTGAGCTGGGTAAAGTGGGAACCCTGGAAACT
CTTTGGGTTGACGACAACGCCATCCTTGACTTCCCCCAGTCCATCCTCGC
GCTCAGGCGCCTGCAAGAGCTTCGGCTAAGTGGTAACCGGATAGTGGAGG
CGCCTGCAAGAGCTTCGGCTAAGTGGTAACCGGATAGTGGAGGTGCCGGA
GGAGATATCCTCTCTATCAGAGCTGCGTGTGCTGGCCCTGGACAACAACG
ACCTCAAGACTGTTCCAAAATCCATCGGCACACTATTACATCTCCAGTCT
CTCTTGCTGAGGTGCCGGAGGAGATATCCTCTCTATCAGAGCTGCGTGTG
CTGGCCCTGGACAACAACGACCTCAAGACTGTTCCAAAATCCATCGGCAC
ACTATTACATCTCCAGTCTCTCTTGCTGAGACAAAACGAGCTGGAGCAGT
TGCCCGAAGAGATGGGAGAGCTCCTAGACATGCGGAACCTCTGTATCAGC
AGCAACCACCTTAGCTCTCTTCCACCCTCGCTCGGCAAGCTGCTGCTGCT
TGAGTTTCTCTACGCTAATGGCAACCGCTTGGGATCTCTGCCCGAAGAGC
TATCGGAGCTGGTGAACCTGAAGAAGACAAAACGAGCTGGAGCAGTTGCC
CGAAGAGATGGGAGAGCTCCTAGACATGCGGAACCTCTGTATCAGCAGCA
ACCACCTTAGCTCTCTTCCACCCTCGCTCGGCAAGCTGCTGCTGCTTGAG
TTTCTCTACGCTAATGGCAACCGCTTGGGATCTCTGCCCGAAGAGCTATC
GGAGCTGGTGAACCTGAAGAAGGTGAACTTATCAAATAACGCCATAGTCA
CCCTGCCCGAAAGGTTGGAAGCAGCGTGGGGGCGGGTCGATGTGTTGACT
GGGAAACTAGACCCGGATACGATAGGATCGCCCTTGAAGGCGGAGGTCAT
CGTTCGCGGCAATCCGTTTGCAGATGCAGCTACTGCTAACAAGCACGGAC
ACATCATCGAGGAAGTTTCGATGGACGAGTCTCGGTGAGTGAACTTATCA
AATAACGCCATAGTCACCCTGCCCGAAAGGTTGGAAGCAGCGTGGGGGCG
GGTCGATGTGTTGACTGGGAAACTAGACCCGGATACGATAGGATCGCCCT
TGAAGGCGGAGGTCATCGTTCGCGGCAATCCGTTTGCAGATGCAGCTACT
GCTAACAAGCACGGACACATCATCGAGGAAGTTTCGATGGACGAGTCTCG
GTGA
back to top