mRNA_H-paniculata_contig25061.6820.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25061.6820.1
Unique NamemRNA_H-paniculata_contig25061.6820.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25061.6820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25061contigH-paniculata_contig25061:2652..3121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size470
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.7388809-UTR-H-paniculata_contig25061:2651..27941622929736.7388809-UTR-H-paniculata_contig25061:2651..2794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25061 2652..2794 +
1691480989.179817-UTR-H-paniculata_contig25061:2651..27941691480989.179817-UTR-H-paniculata_contig25061:2651..2794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25061 2652..2794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929736.7517476-CDS-H-paniculata_contig25061:2794..31211622929736.7517476-CDS-H-paniculata_contig25061:2794..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25061 2795..3121 +
1691480989.1899502-CDS-H-paniculata_contig25061:2794..31211691480989.1899502-CDS-H-paniculata_contig25061:2794..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25061 2795..3121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25061.6820.1prot_H-paniculata_contig25061.6820.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25061 2795..3121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25061.6820.1

>prot_H-paniculata_contig25061.6820.1 ID=prot_H-paniculata_contig25061.6820.1|Name=mRNA_H-paniculata_contig25061.6820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MATFNTFMGFSEDYSPPPPPPPVSPPTTPMMRSSHMDSRHTGDEQSRPTY
QRSSRPVDEHKQLLQQWRHQQSLELCSTCEGGHRSSSERHVAPPPSRRMI
DDSHIIESD
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mRNA from alignment at H-paniculata_contig25061:2652..3121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25061.6820.1 ID=mRNA_H-paniculata_contig25061.6820.1|Name=mRNA_H-paniculata_contig25061.6820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=470bp|location=Sequence derived from alignment at H-paniculata_contig25061:2652..3121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACAACACGCCATTCTTTGGTTCAATAAGACGAAATGTTGCTTTAGGT
TTGGTTGCCCCATGAGGAAAGCTGGTAGAAGCTGGGAGGTGATCAAATAA
ACCTTGCTATCAAGTTCAAGATATACTAAACGCTAACGGTGATATGGCGA
CATTCAACACGTTCATGGGTTTCAGCGAAGATTATTCACCACCGCCTCCG
CCGCCGCCCGTGTCCCCACCAACAACACCCATGATGAGATCGTCACACAT
GGATTCCAGACACACTGGCGATGAACAATCACGTCCAACATATCAACGAT
CGTCACGGCCAGTCGACGAACACAAGCAGCTGCTGCAACAGTGGCGCCAC
CAACAATCTCTCGAGTTATGTTCTACATGCGAGGGTGGCCACCGCTCTTC
TTCCGAGCGGCACGTGGCTCCGCCGCCATCTAGGCGGATGATCGACGATT
CGCATATAATCGAGAGCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig25061:2652..3121+

>mRNA_H-paniculata_contig25061.6820.1 ID=mRNA_H-paniculata_contig25061.6820.1|Name=mRNA_H-paniculata_contig25061.6820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig25061:2652..3121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACATTCAACACGTTCATGGGTTTCAGCGAAGATTATTCACCACC
GCCTCCGCCGCCGCCCGTGTCCCCACCAACAACACCCATGATGAGATCGT
CACACATGGATTCCAGACACACTGGCGATGAACAATCACGTCCAACATAT
CAACGATCGTCACGGCCAGTCGACGAACACAAGCAGCTGCTGCAACAGTG
GCGCCACCAACAATCTCTCGAGTTATGTTCTACATGCGAGGGTGGCCACC
GCTCTTCTTCCGAGCGGCACGTGGCTCCGCCGCCATCTAGGCGGATGATC
GACGATTCGCATATAATCGAGAGCGATATGGCGACATTCAACACGTTCAT
GGGTTTCAGCGAAGATTATTCACCACCGCCTCCGCCGCCGCCCGTGTCCC
CACCAACAACACCCATGATGAGATCGTCACACATGGATTCCAGACACACT
GGCGATGAACAATCACGTCCAACATATCAACGATCGTCACGGCCAGTCGA
CGAACACAAGCAGCTGCTGCAACAGTGGCGCCACCAACAATCTCTCGAGT
TATGTTCTACATGCGAGGGTGGCCACCGCTCTTCTTCCGAGCGGCACGTG
GCTCCGCCGCCATCTAGGCGGATGATCGACGATTCGCATATAATCGAGAG
CGAT
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