prot_H-paniculata_contig25035.6815.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig25035.6815.1
Unique Nameprot_H-paniculata_contig25035.6815.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length174
Homology
BLAST of mRNA_H-paniculata_contig25035.6815.1 vs. uniprot
Match: D8LG90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG90_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 6.640e-39
Identity = 92/177 (51.98%), Postives = 110/177 (62.15%), Query Frame = 0
Query:    1 DFYAGGSYARHHPPM--FNAYGQPVPMPHFIA-HVPLYNHHGSDALPASVQFRLDRLCATGFCKASEIDERCRKFMREVPEPVALQAIEEFSTVDRANIRKVSAYFMGVIRKHADQFHKLNEGAAGPMGPMGLGMVPPGMMPMSXXXXXXXXGYGGMKRGREYEDPYGGSKQHRPRG 174
            DFY GG Y  H PPM  FNAYGQP  M  FI  H+P+Y    ++ LPAS+Q RLD+L ATGFC A EID+RCRKF+REVPE +ALQAIEEF + +R NIRKVSAY MGVIRKHAD +             +G    PP  +P             G+KR REY D +   +Q RP+G
Sbjct:  154 DFY-GGMYG-HAPPMPLFNAYGQP--MATFIPPHMPMYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRGFVA--------VGTSGGPPAGLPSPYEA--------GLKRIREYNDFWAKQQQPRPQG 310          
BLAST of mRNA_H-paniculata_contig25035.6815.1 vs. uniprot
Match: A0A6H5KRV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.670e-37
Identity = 90/177 (50.85%), Postives = 110/177 (62.15%), Query Frame = 0
Query:    1 DFYAGGSYARHHP--PMFNAYGQPVPMPHFIA-HVPLYNHHGSDALPASVQFRLDRLCATGFCKASEIDERCRKFMREVPEPVALQAIEEFSTVDRANIRKVSAYFMGVIRKHADQFHKLNEGAAGPMGPMGLGMVPPGMMPMSXXXXXXXXGYGGMKRGREYEDPYGGSKQHRPRG 174
            +FY GG Y  H P  P+FNAYGQP  M  FI  H+P+Y    ++ LPAS+Q RLD+L ATGFC A EID+RCRKF+REVPE +ALQAIEEF + +R NIRKVSAY MGVIRKHAD +             +G    PP  +P             G+KR REY D +   +Q RP+G
Sbjct:  397 EFY-GGMYG-HAPSMPLFNAYGQP--MATFIPPHIPMYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVA--------VGTSGGPPAGLPSPYEA--------GLKRYREYNDFWAKQQQPRPQG 553          
BLAST of mRNA_H-paniculata_contig25035.6815.1 vs. uniprot
Match: A0A7S1V478_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V478_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-5
Identity = 33/107 (30.84%), Postives = 57/107 (53.27%), Query Frame = 0
Query:   13 PPMFNAYGQPVPM---PHFIAHVPLYNHHGSDALPASVQFRLDRLCATGFCKASEIDERCRKFMREVPEPVALQAIEEFSTVDRANIRKVSAYFMGVIRKHADQFHK 116
            PP FN YG P P    P+  A   L+       LP +VQ+ +  L A+G      +DE     + ++PE +A+ A++ F T++R  +R  +AY  G++R+  ++ H+
Sbjct:  254 PPSFNQYGNPNPSQQNPNRRATAKLHE------LPTNVQYAVQNLQASGLIPGP-LDEGMLGMISDLPENLAVAALQRFMTLNRNTMRNPTAYLAGLLRRELEKIHR 353          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25035.6815.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG90_ECTSI6.640e-3951.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRV7_9PHAE3.670e-3750.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1V478_9STRA1.700e-530.84Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041337Heterogeneous nuclear ribonucleoprotein Q acidic domainPFAMPF18360hnRNP_Q_AcDcoord: 43..109
e-value: 8.9E-18
score: 64.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25035contigH-paniculata_contig25035:2687..3434 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25035.6815.1mRNA_H-paniculata_contig25035.6815.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig25035 2687..3434 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig25035.6815.1 ID=prot_H-paniculata_contig25035.6815.1|Name=mRNA_H-paniculata_contig25035.6815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
DFYAGGSYARHHPPMFNAYGQPVPMPHFIAHVPLYNHHGSDALPASVQFR
LDRLCATGFCKASEIDERCRKFMREVPEPVALQAIEEFSTVDRANIRKVS
AYFMGVIRKHADQFHKLNEGAAGPMGPMGLGMVPPGMMPMSMPMPMPMPG
YGGMKRGREYEDPYGGSKQHRPRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041337hnRNP_Q_AcD