mRNA_H-paniculata_contig25035.6815.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25035.6815.1
Unique NamemRNA_H-paniculata_contig25035.6815.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25035.6815.1 vs. uniprot
Match: D8LG90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG90_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 6.640e-39
Identity = 92/177 (51.98%), Postives = 110/177 (62.15%), Query Frame = 1 
Query:    1 DFYAGGSYARHHPPM--FNAYGQPVPMPHFIA-HVPLYNHHGSDALPASVQFRLDRLCATGFCKASEIDERCRKFMREVPEPVALQAIEEFSTVDRANIRKVSAYFMGVIRKHADQFHKLNEGAAGPMGPMGLGMVPPGMMPMSXXXXXXXXGYGGMKRGREYEDPYGGSKQHRPRG 522
            DFY GG Y  H PPM  FNAYGQP  M  FI  H+P+Y    ++ LPAS+Q RLD+L ATGFC A EID+RCRKF+REVPE +ALQAIEEF + +R NIRKVSAY MGVIRKHAD +             +G    PP  +P             G+KR REY D +   +Q RP+G
Sbjct:  154 DFY-GGMYG-HAPPMPLFNAYGQP--MATFIPPHMPMYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRGFVA--------VGTSGGPPAGLPSPYEA--------GLKRIREYNDFWAKQQQPRPQG 310
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BLAST of mRNA_H-paniculata_contig25035.6815.1 vs. uniprot
Match: A0A6H5KRV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.670e-37
Identity = 90/177 (50.85%), Postives = 110/177 (62.15%), Query Frame = 1 
Query:    1 DFYAGGSYARHHP--PMFNAYGQPVPMPHFIA-HVPLYNHHGSDALPASVQFRLDRLCATGFCKASEIDERCRKFMREVPEPVALQAIEEFSTVDRANIRKVSAYFMGVIRKHADQFHKLNEGAAGPMGPMGLGMVPPGMMPMSXXXXXXXXGYGGMKRGREYEDPYGGSKQHRPRG 522
            +FY GG Y  H P  P+FNAYGQP  M  FI  H+P+Y    ++ LPAS+Q RLD+L ATGFC A EID+RCRKF+REVPE +ALQAIEEF + +R NIRKVSAY MGVIRKHAD +             +G    PP  +P             G+KR REY D +   +Q RP+G
Sbjct:  397 EFY-GGMYG-HAPSMPLFNAYGQP--MATFIPPHIPMYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVA--------VGTSGGPPAGLPSPYEA--------GLKRYREYNDFWAKQQQPRPQG 553
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BLAST of mRNA_H-paniculata_contig25035.6815.1 vs. uniprot
Match: A0A7S1V478_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V478_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-5
Identity = 33/107 (30.84%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   37 PPMFNAYGQPVPM---PHFIAHVPLYNHHGSDALPASVQFRLDRLCATGFCKASEIDERCRKFMREVPEPVALQAIEEFSTVDRANIRKVSAYFMGVIRKHADQFHK 348
            PP FN YG P P    P+  A   L+       LP +VQ+ +  L A+G      +DE     + ++PE +A+ A++ F T++R  +R  +AY  G++R+  ++ H+
Sbjct:  254 PPSFNQYGNPNPSQQNPNRRATAKLHE------LPTNVQYAVQNLQASGLIPGP-LDEGMLGMISDLPENLAVAALQRFMTLNRNTMRNPTAYLAGLLRRELEKIHR 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25035.6815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG90_ECTSI6.640e-3951.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRV7_9PHAE3.670e-3750.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1V478_9STRA1.700e-530.84Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25035contigH-paniculata_contig25035:2687..3434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog2880.D8LG90
Hectar predicted targeting categoryother localisation
EggNOG OGs2D0MM@1,2SEQG@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_004180.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.9086497-CDS-H-paniculata_contig25035:2686..28961622929735.9086497-CDS-H-paniculata_contig25035:2686..2896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25035 2687..2896 -
1691480988.7773468-CDS-H-paniculata_contig25035:2686..28961691480988.7773468-CDS-H-paniculata_contig25035:2686..2896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25035 2687..2896 -
1622929735.9635518-CDS-H-paniculata_contig25035:3122..34341622929735.9635518-CDS-H-paniculata_contig25035:3122..3434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25035 3123..3434 -
1691480988.7948542-CDS-H-paniculata_contig25035:3122..34341691480988.7948542-CDS-H-paniculata_contig25035:3122..3434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25035 3123..3434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25035.6815.1prot_H-paniculata_contig25035.6815.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25035 2687..3434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25035.6815.1

>prot_H-paniculata_contig25035.6815.1 ID=prot_H-paniculata_contig25035.6815.1|Name=mRNA_H-paniculata_contig25035.6815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
DFYAGGSYARHHPPMFNAYGQPVPMPHFIAHVPLYNHHGSDALPASVQFR
LDRLCATGFCKASEIDERCRKFMREVPEPVALQAIEEFSTVDRANIRKVS
AYFMGVIRKHADQFHKLNEGAAGPMGPMGLGMVPPGMMPMSMPMPMPMPG
YGGMKRGREYEDPYGGSKQHRPRG
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mRNA from alignment at H-paniculata_contig25035:2687..3434-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25035.6815.1 ID=mRNA_H-paniculata_contig25035.6815.1|Name=mRNA_H-paniculata_contig25035.6815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=748bp|location=Sequence derived from alignment at H-paniculata_contig25035:2687..3434- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTTTACGCAGGCGGATCGTACGCCCGGCACCACCCTCCAATGTTCAA
CGCCTACGGACAGCCGGTGCCGATGCCACATTTTATCGCGCACGTGCCCC
TGTACAACCACCACGGATCGGATGCGCTTCCCGCGAGCGTCCAGTTCCGG
CTAGATCGGCTGTGCGCGACGGGGTTCTGTAAGGCTAGCGAGATAGACGA
GCGATGCAGAAAGTTCATGCGGGAGGTGCCGGAGCCTGTGGCACTGCAGG
CGATTGAGGAGTTCAGCACGGTGGACAGGGCGAACATACGAAAGGTTTCA
GCATATTTTATGGTGAGATGTGGTGATGGGTAGTGAGTGGTGGCTGATGA
CCTGATGATTGGTGACGTGGGGTACCTCAACTGTTCTCTTTGGCGCATGG
ATTGATTCAAATGGTTTCATTGGGTGTATGGTTGATCGAATGATTGACTG
ATTGATGAGTTAACTGGTCATGGTTGATTTGTGCCTGAATCTATCCCCCC
TCCCCCCGGCAAAAATAAACAAACAACAAATCGAGCAGGGCGTTATCCGA
AAGCACGCGGATCAATTCCACAAGCTGAATGAGGGAGCGGCGGGACCGAT
GGGGCCGATGGGGTTGGGCATGGTGCCGCCGGGTATGATGCCGATGTCAA
TGCCAATGCCAATGCCAATGCCTGGCTACGGAGGGATGAAGCGCGGACGA
GAATACGAGGATCCTTACGGCGGGAGTAAGCAACACAGACCAAGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig25035:2687..3434-

>mRNA_H-paniculata_contig25035.6815.1 ID=mRNA_H-paniculata_contig25035.6815.1|Name=mRNA_H-paniculata_contig25035.6815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig25035:2687..3434- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTTTACGCAGGCGGATCGTACGCCCGGCACCACCCTCCAATGTTCAA
CGCCTACGGACAGCCGGTGCCGATGCCACATTTTATCGCGCACGTGCCCC
TGTACAACCACCACGGATCGGATGCGCTTCCCGCGAGCGTCCAGTTCCGG
CTAGATCGGCTGTGCGCGACGGGGTTCTGTAAGGCTAGCGAGATAGACGA
GCGATGCAGAAAGTTCATGCGGGAGGTGCCGGAGCCTGTGGCACTGCAGG
CGATTGAGGAGTTCAGCACGGTGGACAGGGCGAACATACGAAAGGTTTCA
GCATATTTTATGGATTTTTACGCAGGCGGATCGTACGCCCGGCACCACCC
TCCAATGTTCAACGCCTACGGACAGCCGGTGCCGATGCCACATTTTATCG
CGCACGTGCCCCTGTACAACCACCACGGATCGGATGCGCTTCCCGCGAGC
GTCCAGTTCCGGCTAGATCGGCTGTGCGCGACGGGGTTCTGTAAGGCTAG
CGAGATAGACGAGCGATGCAGAAAGTTCATGCGGGAGGTGCCGGAGCCTG
TGGCACTGCAGGCGATTGAGGAGTTCAGCACGGTGGACAGGGCGAACATA
CGAAAGGTTTCAGCATATTTTATGGGCGTTATCCGAAAGCACGCGGATCA
ATTCCACAAGCTGAATGAGGGAGCGGCGGGACCGATGGGGCCGATGGGGT
TGGGCATGGTGCCGCCGGGTATGATGCCGATGTCAATGCCAATGCCAATG
CCAATGCCTGGCTACGGAGGGATGAAGCGCGGACGAGAATACGAGGATCC
TTACGGCGGGAGTAAGCAACACAGACCAAGGGGCGGCGTTATCCGAAAGC
ACGCGGATCAATTCCACAAGCTGAATGAGGGAGCGGCGGGACCGATGGGG
CCGATGGGGTTGGGCATGGTGCCGCCGGGTATGATGCCGATGTCAATGCC
AATGCCAATGCCAATGCCTGGCTACGGAGGGATGAAGCGCGGACGAGAAT
ACGAGGATCCTTACGGCGGGAGTAAGCAACACAGACCAAGGGGC
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