mRNA_H-paniculata_contig25032.6814.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25032.6814.1
Unique NamemRNA_H-paniculata_contig25032.6814.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: A0A6H5KY98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY98_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 3.590e-43
Identity = 78/106 (73.58%), Postives = 88/106 (83.02%), Query Frame = 1
Query:    1 QLSVDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYPSNRC-------DDIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPR 297
            +++VDFY+ESSADDETL   + FSS WG+RG VQTHFRVLKGGLIRAVTESF+PS+R        DDIEVSPHFYAWAK+ATLTYQYGA  DF  +MYGVSLYTPR
Sbjct:  814 EMAVDFYIESSADDETLGVAERFSSVWGDRGQVQTHFRVLKGGLIRAVTESFFPSDRHHHAFLLEDDIEVSPHFYAWAKWATLTYQYGAPSDFMENMYGVSLYTPR 919          
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: D8LGV6_ECTSI (Glycosyl transferase family 2 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV6_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.720e-40
Identity = 74/109 (67.89%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    1 QLSVDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYPSNRCDDIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPRYVSLRIMTHI 327
            +++VDFY+ESSADD+TL   + FSS WG+RG VQTHFRVLKGGLIRAVTESF+PS+R DDI VSPHFYAW K+A LTYQYGA  DF  +MYGVSL  PR   L    H+
Sbjct:  691 EMAVDFYIESSADDDTLGVAERFSSVWGDRGQVQTHFRVLKGGLIRAVTESFFPSDR-DDIGVSPHFYAWGKWAPLTYQYGAPSDFMENMYGVSLSIPRVDELNKKRHV 798          
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: A0A836CAV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.660e-35
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   10 VDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYPSNR---C----DDIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPR 297
            V F V+SSADDETL  V+ FS  WG+RG   T  R LK GLIRAVTES+YP+++   C    DDIEVSP FYAWAKY TLTYQYGA  DF PDMYG+SLYTPR
Sbjct:  367 VSFNVDSSADDETLQLVQEFSGLWGKRGRTSTSLRTLKAGLIRAVTESYYPTDKHHHCVLLEDDIEVSPLFYAWAKYTTLTYQYGAPADFEPDMYGISLYTPR 469          
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: A0A5E3XNF0_9AGAM (Uncharacterized protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3XNF0_9AGAM)

HSP 1 Score: 92.8 bits (229), Expect = 1.050e-19
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    4 LSVDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYPSNRC-------DDIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPRYVSLR 312
            +S+   VE +AD ETL+ ++ +S+ W   G V  H RV+ GGL+ AV ES+YPS+         DD+EVSP FYAWAK+A L Y+YG  +  A +++G+SLY+P+ + LR
Sbjct:  446 VSLRINVEQAADAETLALIERYSAQW-IHGSVFVHHRVVAGGLLPAVVESWYPSSNDSYGILLEDDVEVSPLFYAWAKHALLRYRYGDERMKATNLFGISLYSPKNLELR 554          
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: A0A166B732_9AGAM (Uncharacterized protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166B732_9AGAM)

HSP 1 Score: 90.9 bits (224), Expect = 4.930e-19
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    4 LSVDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYPSNRC-------DDIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPRYVSLR 312
            +S+   ++ +AD ETL+ V+  S+ W   G V  H RV+ GGL+ AV ES+YPS          DD+EVSP FYAWAK+A L Y+Y + +  A +++G+SLY+P+ + LR
Sbjct:  364 VSLRINIDQAADAETLALVQRLSAEW-THGSVFVHHRVIAGGLLPAVVESWYPSTDDSYGILLEDDVEVSPLFYAWAKHALLRYRYSSERTMANNLFGISLYSPKNLELR 472          
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: A0A8B8ZDY5_PHODC (uncharacterized protein LOC103708423 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B8ZDY5_PHODC)

HSP 1 Score: 87.4 bits (215), Expect = 8.310e-18
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 QLSVDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYPSNRCD-------DIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPRYVSL 309
            ++ ++F ++S  D+ETL  V +F   W ++GP  T  R+++GGLIRAV+ES+YPS+  D       DIEVSP++Y W KYA L Y Y       P++  +SLYTPR V +
Sbjct:  649 EIPLNFNMDSKVDEETLKVVGSFE--W-KQGPTLTRRRIIQGGLIRAVSESWYPSSDNDFGLLLEDDIEVSPYYYLWIKYALLAYHYDPQVSL-PELSSISLYTPRLVEV 754          
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: A0A0C2TQF8_AMAMK (Uncharacterized protein n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2TQF8_AMAMK)

HSP 1 Score: 86.3 bits (212), Expect = 9.840e-18
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    4 LSVDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYP-SNRC------DDIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPRYVSLRI 315
            +S+ F +E S+D +T+  V +F   W   GP+  H RV+ GGL+ AV ES+YP +N        DD+EVSP FYAW K A L Y+YG  K+ +P ++G+SLY  + + L I
Sbjct:   47 VSLKFNLEQSSDGQTMHLVDSF--IWNH-GPIFIHHRVIHGGLLPAVVESWYPHANHTYALILEDDVEVSPLFYAWIKMAILRYRYGDEKNLSPQLFGISLYQQKNLELPI 154          
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: A0A5P1EDG8_ASPOF (Uncharacterized protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EDG8_ASPOF)

HSP 1 Score: 86.7 bits (213), Expect = 1.280e-17
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 QLSVDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYPSNRCD-------DIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPRYVSL 309
            ++S+ F ++S  DD TL T+ +F+  W   GP     R+++GGLIRAV+ES+YPS+  D       DIEVSP++Y W KYA L Y+Y       P++  +SLYTPR + +
Sbjct:  193 EVSLSFNMDSGVDDVTLKTIDSFN--W-PHGPTTVRRRIVQGGLIRAVSESWYPSSDDDFGLLLEDDIEVSPYYYLWIKYALLAYRYDPQVSI-PELSSISLYTPRLIEV 298          
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: A0A401GWI3_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GWI3_9APHY)

HSP 1 Score: 86.7 bits (213), Expect = 1.530e-17
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   22 VESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYP-SNRC------DDIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPRYVSLR 312
            ++ +AD ETL  V  F   W E G V  H RV+ GGL+ AV ES+YP SN        DD+EVSP FYAW K + L Y+YGA ++ +P ++G+SLY  +++ LR
Sbjct:  462 LDQTADPETLDLVDEFE--W-EHGRVSIHHRVIHGGLLPAVVESWYPHSNHSYGLILEDDVEVSPLFYAWIKMSILRYRYGAPQNVSPQLFGISLYQQKHLELR 562          
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Match: A0A367KAP0_RHIAZ (Uncharacterized protein n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367KAP0_RHIAZ)

HSP 1 Score: 85.9 bits (211), Expect = 2.850e-17
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 QLSVDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTESFYPSNRC-------DDIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPRYVSL 309
            ++ ++ ++E SAD  T   V   +SF  ++G  Q   R+ KGGL+ A+ ES+YPS+         DDIEVSP+FYAW+KYA L Y+YG  ++    MYGVSLY PR + L
Sbjct:  355 RVDLNVHMEQSADRVTRMLV---NSFMWKQGAKQIRHRIKKGGLMPAIVESWYPSHDDEYAVLLEDDIEVSPYFYAWSKYAILKYRYGRDREAYRLMYGVSLYAPRNLEL 461          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25032.6814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY98_9PHAE3.590e-4373.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGV6_ECTSI1.720e-4067.89Glycosyl transferase family 2 protein n=1 Tax=Ecto... [more]
A0A836CAV5_9STRA4.660e-3566.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5E3XNF0_9AGAM1.050e-1945.45Uncharacterized protein n=1 Tax=Peniophora sp. CBM... [more]
A0A166B732_9AGAM4.930e-1943.64Uncharacterized protein n=1 Tax=Peniophora sp. CON... [more]
A0A8B8ZDY5_PHODC8.310e-1843.64uncharacterized protein LOC103708423 isoform X1 n=... [more]
A0A0C2TQF8_AMAMK9.840e-1843.24Uncharacterized protein n=1 Tax=Amanita muscaria (... [more]
A0A5P1EDG8_ASPOF1.280e-1742.73Uncharacterized protein n=3 Tax=Asparagus officina... [more]
A0A401GWI3_9APHY1.530e-1746.15Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A367KAP0_RHIAZ2.850e-1744.55Uncharacterized protein n=5 Tax=Rhizopus TaxID=484... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25032contigH-paniculata_contig25032:2198..3535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.0
Seed ortholog evalue5.8e-15
Seed eggNOG ortholog42345.XP_008791567.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMCB@1,2QPYF@2759,37MZ0@33090,3GCYF@35493,3KS5K@4447
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.819262-CDS-H-paniculata_contig25032:2197..23531622929735.819262-CDS-H-paniculata_contig25032:2197..2353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25032 2198..2353 -
1691480988.756438-CDS-H-paniculata_contig25032:2197..23531691480988.756438-CDS-H-paniculata_contig25032:2197..2353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25032 2198..2353 -
1622929735.8329608-CDS-H-paniculata_contig25032:3361..35351622929735.8329608-CDS-H-paniculata_contig25032:3361..3535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25032 3362..3535 -
1691480988.7666018-CDS-H-paniculata_contig25032:3361..35351691480988.7666018-CDS-H-paniculata_contig25032:3361..3535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25032 3362..3535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25032.6814.1prot_H-paniculata_contig25032.6814.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25032 2198..3535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25032.6814.1

>prot_H-paniculata_contig25032.6814.1 ID=prot_H-paniculata_contig25032.6814.1|Name=mRNA_H-paniculata_contig25032.6814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
QLSVDFYVESSADDETLSTVKAFSSFWGERGPVQTHFRVLKGGLIRAVTE
SFYPSNRCDDIEVSPHFYAWAKYATLTYQYGAAKDFAPDMYGVSLYTPRY
VSLRIMTHI*
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mRNA from alignment at H-paniculata_contig25032:2198..3535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25032.6814.1 ID=mRNA_H-paniculata_contig25032.6814.1|Name=mRNA_H-paniculata_contig25032.6814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig25032:2198..3535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTTCGGTCGATTTTTACGTGGAAAGTTCGGCTGACGATGAAACCCT GAGCACGGTGAAGGCGTTCTCGTCGTTCTGGGGGGAGCGAGGACCGGTGC AGACACACTTTCGGGTGCTGAAAGGCGGCTTAATTCGAGCGGTTACCGAG TCGTTCTACCCTTCCAACCGGTGTGTGCAGGGTATGGTCGGTTGTGTAGA GGGGGGTAAGGGTTCGGGAGGGGGGGGGGGGTACTTATGATTTGCATGTG GTAGTTTTTGGACCATTTTCCACACGTCCTCGTGAAGATGTAATTTTGTT CCTATCAGAGCGATTTTGTTCGATGACAGCCAATCGGTCTCTCCTACGTT GATCGGCAAAATTTGCCTCAAAAATGTTTTACCTACCGTAAGTACCTCAA TCCCCACGTGTTCAGGTTCATTTGGACCATTTTGAGCCGCTCTAGCCTTT TATTCGCAATCCCAGGATTCGAATGGCAATCTATCGCATCCTTGGATTTT CTCTGATTCATTTGCATAGATTTTTCTCTCGTTTTTTGTTATTGTTCTGA TTCTCATTGTAATAGATAGCTGCCTGCGATTGTACCCATGTTGAAGTTAA GCAGCCGACTTTGAGCTGCGGTTATGTTTTACACACTCCATCAGAAAAAA AATTGGATCATGACCGACAAGGGGAGAGATTTGTTACAACCCTCAATAGG AAGCATGGCTAATGTATAACTCGCGAGTGTGTACTATAATCAAGCATGAA GTGGCTTCCATGTGAACGTACGGCAGTAATGAAACGCCTCGTTCACGCCA TCTCAAGCCGCAGTCACAATTCAACACTCTTGCCACACTTGGTAAATGTA TAACGCTCTAATAACTCTATCACCGTGTCCGTGTTGAGCTCAGCTCATAT GCAGCTGAATCCAAACATCAGTTGTGTCCAGTTATCAGGCAAGATTAGAT CAAATAAAGGGGTGACCACCTTACAGATAGGTACTCGAATATTATTTATG ATGAATAAATCCGCGGCCGTCCCGAGTAGCAGAGTGATTCAAGCTGCCTC TTCCCTCTCGCCCACCCCATTCTACCGCGTGTTTTGTGTGTTTGTTTTGG TATTTTTCGTTTACGTTTGCTTGTGCATGTATTTACGAAACCAAACCAAA CCAACAGGGATCACCATGCGTTCTTATTGGAGGACGATATCGAGGTCTCG CCGCATTTTTACGCTTGGGCCAAGTACGCAACGCTCACGTACCAATACGG TGCCGCCAAAGACTTTGCGCCGGACATGTATGGGGTCAGCCTCTACACAC CAAGGTATGTGTCGTTGCGGATAATGACGCATATTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig25032:2198..3535-

>mRNA_H-paniculata_contig25032.6814.1 ID=mRNA_H-paniculata_contig25032.6814.1|Name=mRNA_H-paniculata_contig25032.6814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig25032:2198..3535- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTTCGGTCGATTTTTACGTGGAAAGTTCGGCTGACGATGAAACCCT
GAGCACGGTGAAGGCGTTCTCGTCGTTCTGGGGGGAGCGAGGACCGGTGC
AGACACACTTTCGGGTGCTGAAAGGCGGCTTAATTCGAGCGGTTACCGAG
TCGTTCTACCCTTCCAACCGGTGTCAGCTTTCGGTCGATTTTTACGTGGA
AAGTTCGGCTGACGATGAAACCCTGAGCACGGTGAAGGCGTTCTCGTCGT
TCTGGGGGGAGCGAGGACCGGTGCAGACACACTTTCGGGTGCTGAAAGGC
GGCTTAATTCGAGCGGTTACCGAGTCGTTCTACCCTTCCAACCGGTGTGA
CGATATCGAGGTCTCGCCGCATTTTTACGCTTGGGCCAAGTACGCAACGC
TCACGTACCAATACGGTGCCGCCAAAGACTTTGCGCCGGACATGTATGGG
GTCAGCCTCTACACACCAAGGTATGTGTCGTTGCGGATAATGACGCATAT
TTAGGACGATATCGAGGTCTCGCCGCATTTTTACGCTTGGGCCAAGTACG
CAACGCTCACGTACCAATACGGTGCCGCCAAAGACTTTGCGCCGGACATG
TATGGGGTCAGCCTCTACACACCAAGGTATGTGTCGTTGCGGATAATGAC
GCATATTTAG
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