mRNA_H-paniculata_contig25003.6811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25003.6811.1
Unique NamemRNA_H-paniculata_contig25003.6811.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: D7G615_ECTSI (Alternative oxidase isoform A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G615_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.560e-41
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:   25 RDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYTTV 255
            RDHGWIHTLLEEAENERMHLLTFLKLK PGP+FRF VM+SQG+M+NAFFL+YLISPK CHRFVGYIEEEAVHTYT +
Sbjct:  214 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPVFRFAVMISQGVMYNAFFLSYLISPKACHRFVGYIEEEAVHTYTVL 290
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BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: A0A6H5KXL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL8_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.330e-40
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:   25 RDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYTTV 255
            RDHGWIHTLLEEAENERMHLLTFLKLK PGP+FRF VM+SQG+M+NAFFL+YLISPK CHRFVGYIEEEAVHTYT +
Sbjct:  231 RDHGWIHTLLEEAENERMHLLTFLKLKQPGPVFRFAVMISQGVMYNAFFLSYLISPKACHRFVGYIEEEAVHTYTVL 307
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BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: A0A6A4ZNR9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZNR9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.530e-37
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:   25 RDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYTTV 255
            RD GWIHTLLEEAENERMHLL F+ LK PGP+FR  V+  QG+ FN FFLAYLISPKTCHRFVGY+EEEAVHTYT +
Sbjct:   52 RDQGWIHTLLEEAENERMHLLIFMTLKQPGPLFRLLVLGGQGVFFNMFFLAYLISPKTCHRFVGYLEEEAVHTYTAM 128
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BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: A0A507FDX0_9FUNG (Alternative oxidase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FDX0_9FUNG)

HSP 1 Score: 133 bits (334), Expect = 2.480e-36
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:   25 RDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYT 249
            RD+GWIHTLLEEAENERMHLLTF+KLKNPG +FR  V+ +QG+ FNA+FL YL+SP TCHRFVGY+EE AVHTYT
Sbjct:  162 RDYGWIHTLLEEAENERMHLLTFMKLKNPGALFRLTVLFTQGVFFNAYFLCYLLSPMTCHRFVGYLEESAVHTYT 236
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BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: A0A6A4ZNJ6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZNJ6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.240e-36
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   25 RDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYTTV 255
            RD GWIHTLLEEAENERMHLL F+ LK PGP+FR  V+  QG+ FN FFL YLISPKTCHRFVGY+EEEAVHTYT +
Sbjct:  150 RDQGWIHTLLEEAENERMHLLIFMTLKQPGPLFRLLVLGGQGVFFNMFFLTYLISPKTCHRFVGYLEEEAVHTYTAM 226
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BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: A0A090M9Y6_OSTTA (Ubiquinol oxidase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M9Y6_OSTTA)

HSP 1 Score: 132 bits (332), Expect = 6.260e-36
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 MSDYRDTIRDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYT 249
            M   R   RDHGWIHTLLEEAENERMHLLTFLKL+ PG +FR  V+ +QG+ FNAFFL+YLISP+ CHRFVGY+EEEAV TYT
Sbjct:  142 MMSLRTLKRDHGWIHTLLEEAENERMHLLTFLKLREPGLMFRLAVLAAQGVFFNAFFLSYLISPRVCHRFVGYLEEEAVRTYT 224
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BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: A0A067CW99_SAPPC (Uncharacterized protein n=4 Tax=Saprolegnia TaxID=4769 RepID=A0A067CW99_SAPPC)

HSP 1 Score: 131 bits (330), Expect = 8.760e-36
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   25 RDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYTTV 255
            RD GWIHTLLEEAENERMHLL FL +K+PGP+FR  V+ +QG+ FN FFLAYL SPKTCHRFVGY+EEEAVHTYT +
Sbjct:  153 RDQGWIHTLLEEAENERMHLLIFLNMKSPGPLFRLFVLGAQGVFFNLFFLAYLTSPKTCHRFVGYLEEEAVHTYTAL 229
[Close]
BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: A0A1V9ZPY2_9STRA (Alternative oxidase, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPY2_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.210e-36
Identity = 59/77 (76.62%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:   25 RDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYTTV 255
            RD GWIHTLLEEAENERMHLL FL +K+PGP+FR  V+ +QG+ FN FFLAYL SPKTCHRFVGY+EEEAVHTYT++
Sbjct:  153 RDQGWIHTLLEEAENERMHLLIFLNMKSPGPLFRILVLGAQGVFFNMFFLAYLTSPKTCHRFVGYLEEEAVHTYTSL 229
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BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: T0R4Y1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R4Y1_SAPDV)

HSP 1 Score: 132 bits (331), Expect = 1.000e-35
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:   25 RDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYTTV 255
            RD GWIHTLLEEAENERMHLL FL +K+PGP+FR  V+ +QG+ FN FFLAYL SPKTCHRFVGY+EEEAVHTYT +
Sbjct:  161 RDQGWIHTLLEEAENERMHLLIFLNMKSPGPLFRLFVLGAQGVFFNVFFLAYLTSPKTCHRFVGYLEEEAVHTYTAL 237
[Close]
BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Match: A0A1V9Z6A5_9STRA (Alternative oxidase, mitochondrial n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z6A5_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.340e-35
Identity = 58/77 (75.32%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:   25 RDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQGIMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYTTV 255
            RD GWIHTLLEEAENERMHLL F+ +K+PGP+FR  V+ +QG+ FNAFFLAYL SPKTCHRFVGY+EEEA+HTYT +
Sbjct:  181 RDQGWIHTLLEEAENERMHLLIFMTMKSPGPLFRLFVLGAQGVFFNAFFLAYLTSPKTCHRFVGYLEEEAIHTYTAL 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25003.6811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G615_ECTSI1.560e-4187.01Alternative oxidase isoform A n=1 Tax=Ectocarpus s... [more]
A0A6H5KXL8_9PHAE1.330e-4087.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4ZNR9_9STRA3.530e-3777.92Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A507FDX0_9FUNG2.480e-3677.33Alternative oxidase n=1 Tax=Chytriomyces confervae... [more]
A0A6A4ZNJ6_9STRA4.240e-3676.62Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A090M9Y6_OSTTA6.260e-3673.49Ubiquinol oxidase n=2 Tax=Ostreococcus tauri TaxID... [more]
A0A067CW99_SAPPC8.760e-3676.62Uncharacterized protein n=4 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZPY2_9STRA9.210e-3676.62Alternative oxidase, mitochondrial n=1 Tax=Thraust... [more]
T0R4Y1_SAPDV1.000e-3576.62Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9Z6A5_9STRA1.340e-3575.32Alternative oxidase, mitochondrial n=1 Tax=Achlya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25003contigH-paniculata_contig25003:1436..1693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue5.2e-35
Seed eggNOG ortholog2880.D7G615
Preferred nameAOX2
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.alternative oxidase activity
EggNOG OGs28JWX@1,2QSB5@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929735.502859-CDS-H-paniculata_contig25003:1435..16931622929735.502859-CDS-H-paniculata_contig25003:1435..1693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25003 1436..1693 +
1691480988.6063595-CDS-H-paniculata_contig25003:1435..16931691480988.6063595-CDS-H-paniculata_contig25003:1435..1693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25003 1436..1693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25003.6811.1prot_H-paniculata_contig25003.6811.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25003 1436..1693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25003.6811.1

>prot_H-paniculata_contig25003.6811.1 ID=prot_H-paniculata_contig25003.6811.1|Name=mRNA_H-paniculata_contig25003.6811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MSDYRDTIRDHGWIHTLLEEAENERMHLLTFLKLKNPGPIFRFNVMVSQG
IMFNAFFLAYLISPKTCHRFVGYIEEEAVHTYTTV*
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mRNA from alignment at H-paniculata_contig25003:1436..1693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25003.6811.1 ID=mRNA_H-paniculata_contig25003.6811.1|Name=mRNA_H-paniculata_contig25003.6811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at H-paniculata_contig25003:1436..1693+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGATTATCGTGATACAATCAGGGATCATGGTTGGATCCACACCCT
CTTGGAGGAAGCCGAGAACGAGCGCATGCACCTGCTGACGTTCCTCAAGC
TCAAGAACCCAGGACCAATCTTCCGATTCAACGTCATGGTCAGCCAGGGT
ATCATGTTCAACGCGTTCTTCCTGGCGTACCTAATCAGTCCGAAGACGTG
CCACCGTTTCGTTGGTTACATTGAGGAGGAGGCTGTGCATACTTACACTA
CGGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig25003:1436..1693+

>mRNA_H-paniculata_contig25003.6811.1 ID=mRNA_H-paniculata_contig25003.6811.1|Name=mRNA_H-paniculata_contig25003.6811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig25003:1436..1693+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGATTATCGTGATACAATCAGGGATCATGGTTGGATCCACACCCT
CTTGGAGGAAGCCGAGAACGAGCGCATGCACCTGCTGACGTTCCTCAAGC
TCAAGAACCCAGGACCAATCTTCCGATTCAACGTCATGGTCAGCCAGGGT
ATCATGTTCAACGCGTTCTTCCTGGCGTACCTAATCAGTCCGAAGACGTG
CCACCGTTTCGTTGGTTACATTGAGGAGGAGGCTGTGCATACTTACACTA
CGGTATGAATGTCTGATTATCGTGATACAATCAGGGATCATGGTTGGATC
CACACCCTCTTGGAGGAAGCCGAGAACGAGCGCATGCACCTGCTGACGTT
CCTCAAGCTCAAGAACCCAGGACCAATCTTCCGATTCAACGTCATGGTCA
GCCAGGGTATCATGTTCAACGCGTTCTTCCTGGCGTACCTAATCAGTCCG
AAGACGTGCCACCGTTTCGTTGGTTACATTGAGGAGGAGGCTGTGCATAC
TTACACTACGGTATGA
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