mRNA_H-paniculata_contig250.6809.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig250.6809.1
Unique NamemRNA_H-paniculata_contig250.6809.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig250.6809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig250contigH-paniculata_contig250:37233..39066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size606
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929734.7779653-CDS-H-paniculata_contig250:37232..375511622929734.7779653-CDS-H-paniculata_contig250:37232..37551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig250 37233..37551 +
1691480988.2399235-CDS-H-paniculata_contig250:37232..375511691480988.2399235-CDS-H-paniculata_contig250:37232..37551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig250 37233..37551 +
1622929734.7897086-CDS-H-paniculata_contig250:38780..390641622929734.7897086-CDS-H-paniculata_contig250:38780..39064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig250 38781..39064 +
1691480988.2478266-CDS-H-paniculata_contig250:38780..390641691480988.2478266-CDS-H-paniculata_contig250:38780..39064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig250 38781..39064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig250.6809.1prot_H-paniculata_contig250.6809.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig250 37233..39064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig250.6809.1

>prot_H-paniculata_contig250.6809.1 ID=prot_H-paniculata_contig250.6809.1|Name=mRNA_H-paniculata_contig250.6809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
SCIVPRRHSSPIFYIVNSSHKIVLKTIDQNCSVCGLSLANIIVFQALNRR
VAPLAPSVLGRSLYRARVQGPPYAVDRLSLTMNSANASTAAAAATLKGML
LCIGARGRPAFASTTTIATTTARSSRSSSGRQGFCTSSRRHFVPIRTSAS
IATGGGARSHRQATASSTASAATVAVVGAAAAAGYCVYQSSTRTPEAAAE
G
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mRNA from alignment at H-paniculata_contig250:37233..39066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig250.6809.1 ID=mRNA_H-paniculata_contig250.6809.1|Name=mRNA_H-paniculata_contig250.6809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1834bp|location=Sequence derived from alignment at H-paniculata_contig250:37233..39066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTGCATTGTTCCAAGACGGCACAGTTCCCCTATTTTTTATATTGTAAA
CTCATCTCACAAAATAGTGTTGAAAACGATTGACCAAAATTGTTCCGTCT
GTGGCTTATCATTGGCCAATATCATAGTTTTCCAGGCTCTAAATCGCAGG
GTTGCACCCCTTGCACCTTCTGTGCTTGGCAGGTCGCTCTACAGGGCGAG
AGTCCAGGGACCACCGTATGCGGTGGATCGTTTGTCGCTCACCATGAATT
CTGCTAATGCTTCGACTGCTGCCGCTGCTGCAACCTTGAAGGGCATGTTG
TTATGCATTGGCGCAAGAGGTGCGAGAAATTGAGTTCAACTGTTCAGAGT
ATGTTCTGGTTGTGCTCAGCGTCTCTGTTTCACAAGGCAAGAGCGATCTC
CCACACACATTACAATTACACACACACATAGTGCGCATGTCAAGCATCTA
TGCAGATGTGTGCTCTGCCCGGCTGGAGTAATGACCACGCACCTCTAGAG
AATAGACACACCGCTCACTCTTTTGTTCTATCAGTAGTAATGATAAACAG
CACCCACACATGTTGACCGGCTGGTTTGATTTCACCTGCCGAAGTGATTT
CAGATCGTTGATTGTATGGTTAGATAGAACCACTACAGTCATCTCTACGT
CCGTGCAGTCCATATTTTGTCCTCGTACCCACCTATTCAACACCCATGAC
CGGCACACAACGGTATCTCTGTACAACTCTAACTCTCCGTGAAGATTCGT
ACTTAGAAATTACTTGGGTATAGTGTCGAAAAGCTGTTCCGAAAACAATA
AGAACCACCTTTAAAGAAATGAAGGGAATAAAAAATGCTTACGGATTGGA
CGGATCAGATCGTTCATGGCTCGTCCGGATCATTTGGCGGGTGGTATAGA
TCGTTTGCATGAATAAATTCGTAATGATCCGTTCAAATTTGTCCATAGTT
AACCCGTGCGATCTTGATCGTTAGCAACACGGTGGTCTGCCCACAGCTGA
TCGAAAGCAGATGTCTTCTCATAGTGATCTGTACGACCTGTAATATCTAC
ACATGTTTATCCACCACTGATCCGTGCCGCACAGATCTTATCTGCCGCGA
GGTGATAGTTTTGTTTACGGTTGATCCATACGAGCCGACTCGCGTGGATA
CTAATCGGCCCGTGCCAAGGGGCGAAACGGACCCCGTACCTGCGGTAGGC
TGATTTTATCTCCCACAAAACAACATATTTTCAAGATTATGAGGAGTGTG
CATCGTAGTTCACCAGTATATATTCAAACTAATTCATGAGTTTGTCAACC
TTTCTAGTATGCCTATTTGTCAAAAATTGTGGCCGACGCTTCCAGTCGCC
AGTCGTCGTTCAAGGATATCCGAATTCACCACCTAACACAAATGTTTATC
ATGGTAAAATTTGTGGAAAATACTTGCAGAAGTTTGTTTTATATGCCCCC
CTGCCCCCGTGCGCGCCCTCATAACCCCCCCCCCCCACCCTTCTCCCGTC
GCTTTGCCATGCTGAACGCCGCCTCCTGTTAATTTTGTTTTCGCCAAGGT
CGACCGGCCTTCGCTTCTACCACCACCATTGCCACCACTACCGCACGCAG
CAGCCGCAGCAGCAGCGGTAGACAAGGCTTCTGCACCAGCAGCAGACGGC
ACTTCGTTCCCATCCGCACCTCGGCGAGCATCGCAACAGGCGGCGGTGCT
CGATCACATCGCCAAGCGACTGCTAGCTCTACAGCTTCGGCGGCGACCGT
TGCGGTTGTGGGGGCGGCGGCCGCGGCAGGGTACTGTGTCTATCAGTCTT
CAACCAGGACGCCTGAGGCGGCGGCAGAGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig250:37233..39066+

>mRNA_H-paniculata_contig250.6809.1 ID=mRNA_H-paniculata_contig250.6809.1|Name=mRNA_H-paniculata_contig250.6809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig250:37233..39066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGTGCATTGTTCCAAGACGGCACAGTTCCCCTATTTTTTATATTGTAAA
CTCATCTCACAAAATAGTGTTGAAAACGATTGACCAAAATTGTTCCGTCT
GTGGCTTATCATTGGCCAATATCATAGTTTTCCAGGCTCTAAATCGCAGG
GTTGCACCCCTTGCACCTTCTGTGCTTGGCAGGTCGCTCTACAGGGCGAG
AGTCCAGGGACCACCGTATGCGGTGGATCGTTTGTCGCTCACCATGAATT
CTGCTAATGCTTCGACTGCTGCCGCTGCTGCAACCTTGAAGGGCATGTTG
TTATGCATTGGCGCAAGAGTCGTGCATTGTTCCAAGACGGCACAGTTCCC
CTATTTTTTATATTGTAAACTCATCTCACAAAATAGTGTTGAAAACGATT
GACCAAAATTGTTCCGTCTGTGGCTTATCATTGGCCAATATCATAGTTTT
CCAGGCTCTAAATCGCAGGGTTGCACCCCTTGCACCTTCTGTGCTTGGCA
GGTCGCTCTACAGGGCGAGAGTCCAGGGACCACCGTATGCGGTGGATCGT
TTGTCGCTCACCATGAATTCTGCTAATGCTTCGACTGCTGCCGCTGCTGC
AACCTTGAAGGGCATGTTGTTATGCATTGGCGCAAGAGGTCGACCGGCCT
TCGCTTCTACCACCACCATTGCCACCACTACCGCACGCAGCAGCCGCAGC
AGCAGCGGTAGACAAGGCTTCTGCACCAGCAGCAGACGGCACTTCGTTCC
CATCCGCACCTCGGCGAGCATCGCAACAGGCGGCGGTGCTCGATCACATC
GCCAAGCGACTGCTAGCTCTACAGCTTCGGCGGCGACCGTTGCGGTTGTG
GGGGCGGCGGCCGCGGCAGGGTACTGTGTCTATCAGTCTTCAACCAGGAC
GCCTGAGGCGGCGGCAGAGGGGGTCGACCGGCCTTCGCTTCTACCACCAC
CATTGCCACCACTACCGCACGCAGCAGCCGCAGCAGCAGCGGTAGACAAG
GCTTCTGCACCAGCAGCAGACGGCACTTCGTTCCCATCCGCACCTCGGCG
AGCATCGCAACAGGCGGCGGTGCTCGATCACATCGCCAAGCGACTGCTAG
CTCTACAGCTTCGGCGGCGACCGTTGCGGTTGTGGGGGCGGCGGCCGCGG
CAGGGTACTGTGTCTATCAGTCTTCAACCAGGACGCCTGAGGCGGCGGCA
GAGGGG
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