mRNA_H-paniculata_contig25.6802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25.6802.1
Unique NamemRNA_H-paniculata_contig25.6802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: D7FPR4_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPR4_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.510e-45
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1
Query:   10 QVTDIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDWTS 294
            +VTD  NMCLLVDALRPDE+REV ARRG+LNVVNP+F DRYY L+L++WDEREMAKIL+ LAITEPGENW+DETY R  E+G L GWELPLDWT 
Sbjct:  722 KVTDTGNMCLLVDALRPDEEREVLARRGYLNVVNPIFADRYYHLNLAVWDEREMAKILVHLAITEPGENWLDETYTRSPEIGALYGWELPLDWTQ 816          
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: T0QSD8_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QSD8_SAPDV)

HSP 1 Score: 120 bits (300), Expect = 1.910e-29
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 LLIQVTDIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDWTSPD 300
            L  ++ D+EN   ++DAL   EQ+EV    G+LN++NP  PDRYY LDL++ DERE+AKI + LA+TEPGENWI+ET+  +    P+PGW+LP+ WT  D
Sbjct: 1224 LFARIIDLENFATILDALSLPEQKEVARSLGWLNILNPKVPDRYYELDLAVRDERELAKIYVALAVTEPGENWINETFAWQRSEPPIPGWQLPISWTKED 1323          
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: A0A2D4C738_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C738_PYTIN)

HSP 1 Score: 111 bits (277), Expect = 1.130e-28
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   10 QVTDIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDWTSPD 300
            ++ DI N   L DA+ PDEQ       G+LN+ NP+FP+R Y LDLS+WDEREM K+L+ LAITEPGENWI++++        +PGW+LP+ W   D
Sbjct:   52 RIIDIANFHRLFDAMTPDEQYVCAKSLGWLNIFNPMFPERAYSLDLSIWDEREMTKLLVELAITEPGENWINQSFSMVRGEPGIPGWKLPVRWEKED 148          
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: A0A1V9ZMY6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMY6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.960e-28
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 LLIQVTDIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDWTSPD 300
            L  ++ DIEN+  ++DAL   EQ+E+    G+LN++NP  PDRYY LDL++ DERE+AK  + LA+TEPGENWI+E++       P+PGW+LP+ W   D
Sbjct: 1224 LFARIIDIENLATIIDALTLPEQKEIARTLGWLNILNPKSPDRYYELDLAVRDEREVAKTFVALAVTEPGENWINESFAWSKGEPPIPGWQLPISWAKED 1323          
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: A0A7S3YHR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHR3_HETAK)

HSP 1 Score: 110 bits (275), Expect = 2.330e-27
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 1
Query:   13 VTDIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDW 288
            + D ENM L++D L  +E  E+  R G+LN++NPV PDR Y +DLS+ D+RE+  I  RLAI EPG+NWI E+Y R  ++ P+PGWELP  W
Sbjct:  159 IVDWENMHLVLDELTGEEYLEIAHRLGYLNLINPVHPDRLYAMDLSIPDQRELCSIFARLAIIEPGDNWIHESYRRSWDIVPIPGWELPRGW 250          
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: A0A1W0A877_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A877_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.150e-25
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   10 QVTDIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDWTSPD 300
            ++ D+EN   + D+L   EQRE     G+LN+ NP  PDRYY LDLS+ DERE+ KI + LA+TEPGENWI+E++       PLPGW+LP+ W   D
Sbjct: 1225 RIIDLENFMEIFDSLTLPEQRECARTLGWLNIFNPKHPDRYYGLDLSIRDERELTKIFVSLAVTEPGENWINESFAWVKGDEPLPGWQLPVSWAKDD 1321          
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: A0A8J2WTH8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTH8_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.470e-25
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   19 DIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDWTSPD 300
            D+EN   +   L P EQ E+  R G+LNV+NP+ P+R Y LDL  +++REM K+L++LA++EPG NW DE Y   ++   +PGWELP +W SPD
Sbjct: 1471 DLENFHTIFKFLEPREQHELVHRLGWLNVMNPLHPERVYVLDLRRYEDREMCKVLVKLAVSEPGANWNDEGYRWSIKDPYVPGWELPAEWASPD 1564          
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: F0YFV2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFV2_AURAN)

HSP 1 Score: 107 bits (266), Expect = 7.460e-25
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   10 QVTDIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDW 288
            +V D++N   +VD L  +E  E+  R G++NV NPVF DR Y+L L + DER+MA +L+RLAI EPGENW+DE + RK  L   PGW+LP +W
Sbjct: 1425 RVVDLDNFYTVVDELDEEEIDELVFRLGYMNVYNPVFADRMYKLCLKVPDERQMAIVLVRLAIVEPGENWVDEKFRRKESLQWSPGWQLPAEW 1517          
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: A0A7S3XT96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT96_HETAK)

HSP 1 Score: 105 bits (261), Expect = 3.100e-24
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   10 QVTDIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDWTSPD 300
            ++ D+E+   L  AL P E+ E+  R G LN++NP+ PD  Y LDLS WDEREM K+L+ LA+ EPGENW+DE +       P+P W L  DWT+PD
Sbjct:  471 RLVDLEHAPRLWRALTPAEREELQHRLGVLNLMNPLDPDCSYDLDLSHWDEREMCKMLVELAVAEPGENWLDEAFHWSRARPPVPDWHLRRDWTTPD 567          
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Match: A0A7S1XZJ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZJ5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.430e-24
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   10 QVTDIENMCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKILIRLAITEPGENWIDETYERKVELGPLPGWELPLDWTS 294
            ++ D+EN  +++  L  DE+RE+  R G LN+ NP+ PD +Y LDL   ++RE+ K+L+RLA+ EPGENW+ E Y+  +   P+PGWELPL W  
Sbjct:  661 RIVDLENFDVIMTTLDDDEERELLHRLGGLNLKNPMKPDGFYFLDLRSREQRELCKMLVRLAVEEPGENWLGEEYQWSIHDEPVPGWELPLSWAE 755          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25.6802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR4_ECTSI3.510e-4576.84Hypothetical leucine rich repeat calcium binding p... [more]
T0QSD8_SAPDV1.910e-2952.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4C738_PYTIN1.130e-2850.52Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9ZMY6_9STRA7.960e-2849.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S3YHR3_HETAK2.330e-2752.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1W0A877_9STRA1.150e-2550.52Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A8J2WTH8_9STRA5.470e-2548.94Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YFV2_AURAN7.460e-2551.61Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3XT96_HETAK3.100e-2449.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1XZJ5_9STRA3.430e-2446.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25contigH-paniculata_contig25:15321..16167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog2880.D7FPR4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat calcium binding protein
Ec32 orthologEc-20_001060.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size300
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25.6802.1prot_H-paniculata_contig25.6802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25 15321..16137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.828703-CDS-H-paniculata_contig25:15320..154281622929733.828703-CDS-H-paniculata_contig25:15320..15428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25 15321..15428 -
1691480987.7335703-CDS-H-paniculata_contig25:15320..154281691480987.7335703-CDS-H-paniculata_contig25:15320..15428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25 15321..15428 -
1622929733.8499448-CDS-H-paniculata_contig25:15975..161371622929733.8499448-CDS-H-paniculata_contig25:15975..16137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25 15976..16137 -
1691480987.747234-CDS-H-paniculata_contig25:15975..161371691480987.747234-CDS-H-paniculata_contig25:15975..16137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25 15976..16137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929733.867408-UTR-H-paniculata_contig25:16137..161671622929733.867408-UTR-H-paniculata_contig25:16137..16167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25 16138..16167 -
1691480987.7571566-UTR-H-paniculata_contig25:16137..161671691480987.7571566-UTR-H-paniculata_contig25:16137..16167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25 16138..16167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25.6802.1

>prot_H-paniculata_contig25.6802.1 ID=prot_H-paniculata_contig25.6802.1|Name=mRNA_H-paniculata_contig25.6802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MCLLVDALRPDEQREVFARRGFLNVVNPVFPDRYYRLDLSMWDEREMAKI
LIRLAITEPGENWIDETYERKVELGPLPGWELPLDWTSPD
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mRNA from alignment at H-paniculata_contig25:15321..16167-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25.6802.1 ID=mRNA_H-paniculata_contig25.6802.1|Name=mRNA_H-paniculata_contig25.6802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=847bp|location=Sequence derived from alignment at H-paniculata_contig25:15321..16167- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATTGATTCAGGTAACAGATATTGAAAATATGTGCCTGCTGGTAGACGC TCTCCGACCCGACGAGCAAAGGGAGGTATTTGCTAGGCGAGGCTTCCTGA ACGTGGTCAATCCGGTTTTCCCTGATAGATACTATCGGCTAGATCTCTCC ATGTGGGATGAACGAGAGATGGCAAAAATCCTGATTCGACTGGTGAGCCA CGTAGTATCCCCTCGACGACGAGCGATGCTCCTTCTGTTCAATAAGCCAT CACTTTCGTCAAAAATTGCAGTTCGAAAGTTAAAATATCAATACGTTAAG GGTGACCAGCAGAAATTTCCACCTCGATATTAGGGTTATTATTTCCTCCC TCCCTCCCACCATTTTTGCACAATTCGGATTGTCGAAAATGAAGATAGAT CCGATTGACCTCGTCACAGCTCAAAGCGTTGATGCAAATTTTGGCCGAAA AAAGGCGATTGGGAATTTATGTTGATACCAAGAAATATTCTGAAAACGCG TGCAGGGCTGAGACTGTAATGCGTGTTGATACCATGACGATGCGTGTAGA TCTAAAATGGTGGTGTGTGTAGGTTTTATGGTGGATATACACGCGTTGCC ATTGTACCTGTTGGCATCAAGAATGGGCTAGGAGAAAAATCTAACCCAAG ATATCGTTTTTTTCATGTCTACTAGCGTCGCTTACATATATAACCAAACA GAACCTCTCCTCACGATGTTGTTCGATTGCCCGACTCAGGCGATCACAGA GCCCGGCGAGAACTGGATAGACGAAACTTACGAGCGAAAAGTGGAACTCG GTCCTTTGCCTGGCTGGGAACTACCGCTGGATTGGACTTCGCCAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig25:15321..16167-

>mRNA_H-paniculata_contig25.6802.1 ID=mRNA_H-paniculata_contig25.6802.1|Name=mRNA_H-paniculata_contig25.6802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig25:15321..16167- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCTGCTGGTAGACGCTCTCCGACCCGACGAGCAAAGGGAGGTATT
TGCTAGGCGAGGCTTCCTGAACGTGGTCAATCCGGTTTTCCCTGATAGAT
ACTATCGGCTAGATCTCTCCATGTGGGATGAACGAGAGATGGCAAAAATC
CTGATTCGACTGATGTGCCTGCTGGTAGACGCTCTCCGACCCGACGAGCA
AAGGGAGGTATTTGCTAGGCGAGGCTTCCTGAACGTGGTCAATCCGGTTT
TCCCTGATAGATACTATCGGCTAGATCTCTCCATGTGGGATGAACGAGAG
ATGGCAAAAATCCTGATTCGACTGGCGATCACAGAGCCCGGCGAGAACTG
GATAGACGAAACTTACGAGCGAAAAGTGGAACTCGGTCCTTTGCCTGGCT
GGGAACTACCGCTGGATTGGACTTCGCCAGATGCGATCACAGAGCCCGGC
GAGAACTGGATAGACGAAACTTACGAGCGAAAAGTGGAACTCGGTCCTTT
GCCTGGCTGGGAACTACCGCTGGATTGGACTTCGCCAGAT
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