mRNA_H-paniculata_contig2498.6797.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2498.6797.1
Unique NamemRNA_H-paniculata_contig2498.6797.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: D7FWE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE5_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 6.850e-44
Identity = 89/206 (43.20%), Postives = 101/206 (49.03%), Query Frame = 1
Query:    1 MGGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFKAGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRLRRHR 618
            MGGDV GARDDGLDVVNLMHGR DVPG+EV+KGLRLGGLKEAL ++A+G A+ EEFK                                                                                            FFSRY+GWGPGQLEAEVL  AW LAACDL S+L++  HPDQPGHFW +IM RL+RHR
Sbjct:    1 MGGDVTGARDDGLDVVNLMHGRADVPGMEVVKGLRLGGLKEALALVAQGRAQPEEFK--------------------------------------------------------------------------------------------FFSRYSGWGPGQLEAEVLGGAWELAACDLESVLESQNHPDQPGHFWGKIMGRLQRHR 114          
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A6H5JA69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA69_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 3.360e-43
Identity = 92/206 (44.66%), Postives = 103/206 (50.00%), Query Frame = 1
Query:    1 MGGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFKAGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRLRRHR 618
            MGGDV GARDDGLDVVNLMHGREDVPG+EV+KGLRLGGLKEAL ++A+G A+ EEFK                                                                                            FFSRY+GWGPGQLEAEVLA AW LAACDL S+L++  HPDQPGHFW EIM RL+RHR
Sbjct:  235 MGGDVTGARDDGLDVVNLMHGREDVPGMEVVKGLRLGGLKEALALVAQGRAQPEEFK--------------------------------------------------------------------------------------------FFSRYSGWGPGQLEAEVLAGAWELAACDLESVLESQNHPDQPGHFWGEIMGRLQRHR 348          
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A835ZEY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.470e-20
Identity = 67/208 (32.21%), Postives = 100/208 (48.08%), Query Frame = 1
Query:    4 GGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFK-----AGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVS-HRHFARASRVDHRSCLCGC-GYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRL 606
            GGDV   RDDGLDVVN MHGR+D  GIEV+KG++LGGL +AL ++A+G+A+  EFK      G+   +    ++  A          +L        + +   P      +L      ++  A   R+  R    G  G+  V+  +               WGPGQL  +V   AW  AACD+ ++L  +T   QP   W E+++R+
Sbjct:  154 GGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQ------YTDESQPAALWTEVLARMGGKYKTLAENGRLGARHNAVGVWGWLSVLCAL-------------LRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARM 342          
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A835YX41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX41_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.320e-19
Identity = 61/201 (30.35%), Postives = 79/201 (39.30%), Query Frame = 1
Query:    4 GGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFKAGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRL 606
            GGDV     DG D VNLMHGREDV G E++KG++LGGL+EAL  +A+G A+ +EFK                                                                                            FF RY GW PGQL+ EV A  W LAACD+P+IL N+    QP   W++++ R+
Sbjct:  114 GGDVVSGTGDGTDAVNLMHGREDVEGTEILKGVKLGGLEEALARVAEGTAQPQEFK--------------------------------------------------------------------------------------------FFCRYCGWAPGQLQEEVKAGIWYLAACDVPTILDNYIQ-GQPDGLWSDVLRRM 221          
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A836CDX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDX0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.920e-17
Identity = 64/206 (31.07%), Postives = 93/206 (45.15%), Query Frame = 1
Query:    4 GGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFK-----AGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRL 606
            GGDV   RDDGLDVVN MHGR+D  GIEV+KG++LGGL +AL ++A+G+A+  EFK      G+   +    ++  A          +L        + +   P      +L      R   +   +   S    C  AV                     GP QL  +V   AW  AACD+ ++L  +T   QP   W E+++R+
Sbjct:   18 GGDVGKRRDDGLDVVNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQ------YTDESQPAALWTEVL-----ARMGGKYKTLAENSL---CASAV---------------------GPRQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARM 188          
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Match: A0A836CG07_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG07_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.010e-13
Identity = 54/192 (28.12%), Postives = 88/192 (45.83%), Query Frame = 1
Query:   46 VNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGEAEAEEFK-----AGFSDHEKHAPLE*KAPTPLLTVCFPILQPLLYLFCWNNFVSPLRYCLRIL*DCVSHRHFARASRVDHRSCLCGCGYAVVIHTISLFLFHRQFFSRYAGWGPGQLEAEVLAKAWVLAACDLPSILKNHTHPDQPGHFWNEIMSRL 606
            VN MHGR+D  GIEV+KG++LGGL +AL ++A+G+A+  EFK      G+   +    ++  A          +L        + +   P      +L   +  ++   A +      L    +   ++  S       F      WGPGQL  +V   AW  AACD+ ++L  +T   QP   W E+++R+
Sbjct:    3 VNFMHGRDDCEGIEVIKGVKLGGLPDALALVAQGKADPSEFKFFVRFCGWGPGQLAREVKLGAWYAAACDVGTVLDQ------YTDESQPAALWTEVLAR-MGGKYKTLAEKWGGADDLDSSYFNSYLNGNS----GVPFLCALLRWGPGQLARKVKLGAWSAAACDMGTVLNQYTDESQPAALWTEVLARM 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2498.6797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FWE5_ECTSI6.850e-4443.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA69_9PHAE3.360e-4344.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZEY4_9STRA4.470e-2032.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YX41_9STRA1.320e-1930.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDX0_9STRA2.920e-1731.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG07_9STRA6.010e-1328.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2498contigH-paniculata_contig2498:12037..13377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size618
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2498.6797.1prot_H-paniculata_contig2498.6797.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2498 12442..13377 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.8997445-UTR-H-paniculata_contig2498:12036..124411622929732.8997445-UTR-H-paniculata_contig2498:12036..12441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2498 12037..12441 -
1691480987.371346-UTR-H-paniculata_contig2498:12036..124411691480987.371346-UTR-H-paniculata_contig2498:12036..12441Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2498 12037..12441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.9196656-CDS-H-paniculata_contig2498:12441..125671622929732.9196656-CDS-H-paniculata_contig2498:12441..12567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2498 12442..12567 -
1691480987.38117-CDS-H-paniculata_contig2498:12441..125671691480987.38117-CDS-H-paniculata_contig2498:12441..12567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2498 12442..12567 -
1622929732.942293-CDS-H-paniculata_contig2498:13290..133771622929732.942293-CDS-H-paniculata_contig2498:13290..13377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2498 13291..13377 -
1691480987.3897-CDS-H-paniculata_contig2498:13290..133771691480987.3897-CDS-H-paniculata_contig2498:13290..13377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2498 13291..13377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2498.6797.1

>prot_H-paniculata_contig2498.6797.1 ID=prot_H-paniculata_contig2498.6797.1|Name=mRNA_H-paniculata_contig2498.6797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MGGDVAGARDDGLDVVNLMHGREDVPGIEVMKGLRLGGLKEALDMIAKGE
AEAEEFKAGFSDHEKHAPLE*
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mRNA from alignment at H-paniculata_contig2498:12037..13377-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2498.6797.1 ID=mRNA_H-paniculata_contig2498.6797.1|Name=mRNA_H-paniculata_contig2498.6797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-paniculata_contig2498:12037..13377- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGGCGATGTAGCGGGTGCTCGCGACGATGGACTGGACGTGGTTAA TCTCATGCACGGTCGAGAAGACGTGCCTGGCATTGAGGTACAATAAATGT CTATTCTTTTGAGTTGTTACCCAGCAGCGGCGACGACATCGCAGGTGTTT TTATATTTTGCACACAACACCTGGAGGGTAAGGCCGTTCGGCTAGTGCGT ATGTACCCATGAGCAGGGTTTTTGTATCTTTATGTTGTGTGGTATCGCTG TTCATTTGCCATGGCGCGTGTTTTTTCACCCGCTTTGGTAACTGCTTACT CCGCTGATCTCGTTAACGGCTTCCCATGGCAGTTTTGTGTTTCGTGCGTG TGGATTTTTATTTCCATATACATCGGCTGTTTGGTGTTTGTTTGCCACGC GGCCGTGCTTTACGGTGCACTGTTTATGTCGTGCCACCACAGCGTTGACA CAATTATAATGATAATGGAATGTGGCCCTTAACGGCCTGCTGTGTCCGTA CGTCACTCGGAGCGTTGAGGGGAAGCGAATAAGCTTTGCCATTGGGCGCA ACATGCGTTCGTCTGCGTTCATTCACGGTGTTGCTCTGTCTTAGTGTTTT CGTTCTGTTGTCAGCTATCTACCACCTATGTGCCCAAGCAAGTCCGTTGG TGATGTTGAGCATCGCCTTACTGACCTCACCTCGACTGGTGTAGGAGAAG CTCCGCTGAGTACCGGCCCAAAAGTCCAGGACAGGGGCCGCACTGTGAGA ATGGATATTTGCTTGTTTTTATTGCCGTTGGCTTGCTATTCCTGTTCCCC ACATGGGCAGGTGATGAAAGGACTACGACTCGGAGGGCTCAAGGAGGCTC TAGACATGATAGCCAAGGGTGAAGCCGAGGCTGAGGAATTCAAGGCAGGT TTCTCTGACCACGAAAAGCATGCTCCCCTTGAATAGAAAGCACCAACACC CCTCCTCACCGTTTGTTTTCCCATTTTGCAACCCCTCTTGTATCTATTCT GCTGGAATAATTTTGTATCTCCGCTCCGCTACTGTCTCAGAATCCTTTAG GACTGTGTATCTCATCGCCACTTTGCACGTGCTTCGAGGGTGGACCATCG CTCATGCTTATGTGGATGCGGTTACGCCGTCGTGATCCACACCATATCCC TTTTTTTGTTTCACCGTCAGTTTTTTTCGAGGTACGCAGGGTGGGGTCCA GGCCAACTAGAAGCAGAGGTGCTGGCGAAGGCCTGGGTGTTGGCAGCTTG CGATCTGCCCAGCATCTTGAAGAATCACACCCACCCTGATCAGCCCGGGC ACTTTTGGAATGAGATCATGTCGCGATTGCGGCGACATCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2498:12037..13377-

>mRNA_H-paniculata_contig2498.6797.1 ID=mRNA_H-paniculata_contig2498.6797.1|Name=mRNA_H-paniculata_contig2498.6797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig2498:12037..13377- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGGCGATGTAGCGGGTGCTCGCGACGATGGACTGGACGTGGTTAA
TCTCATGCACGGTCGAGAAGACGTGCCTGGCATTGAGATGGGGGGCGATG
TAGCGGGTGCTCGCGACGATGGACTGGACGTGGTTAATCTCATGCACGGT
CGAGAAGACGTGCCTGGCATTGAGGTGATGAAAGGACTACGACTCGGAGG
GCTCAAGGAGGCTCTAGACATGATAGCCAAGGGTGAAGCCGAGGCTGAGG
AATTCAAGGCAGGTTTCTCTGACCACGAAAAGCATGCTCCCCTTGAATAG
GTGATGAAAGGACTACGACTCGGAGGGCTCAAGGAGGCTCTAGACATGAT
AGCCAAGGGTGAAGCCGAGGCTGAGGAATTCAAGGCAGGTTTCTCTGACC
ACGAAAAGCATGCTCCCCTTGAATAG
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