mRNA_H-paniculata_contig2497.6795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: D8LSD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD6_ECTSI) HSP 1 Score: 116 bits (290), Expect = 4.050e-31 Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1
Query: 1 MSISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSGIEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMF 339
MSISK HDELCTSYAALALYDGDAEITSDQ+S+LI ATGNEVE YWPTLF+ F+AK+GIEKLIL A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMF
Sbjct: 1 MSISKELHDELCTSYAALALYDGDAEITSDQLSALITATGNEVEGYWPTLFSGFLAKAGIEKLIL-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMF 112
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: A0A835YXP2_9STRA (60s acidic ribosomal protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP2_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.120e-29 Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 1
Query: 22 HDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSGIEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGGADEGGGDY 372
HDELCTSYAALALYDG+AEITS+Q+ +LI+ATGNEVEAYWPTLFAS++AK+GIE LIL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX +DMGGGMDMFGGG GGDY
Sbjct: 5 HDELCTSYAALALYDGEAEITSEQLKTLIEATGNEVEAYWPTLFASYLAKAGIEDLILAVGSAPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VDMGGGMDMFGGGE---GGDY 116
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: A0A0P5M2D2_9CRUS (Putative 60S acidic ribosomal protein P1 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5M2D2_9CRUS) HSP 1 Score: 95.9 bits (237), Expect = 3.910e-23 Identity = 84/118 (71.19%), Postives = 100/118 (84.75%), Query Frame = 1
Query: 1 MSISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSGIEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGGAD 354
M+ISKAQHDELC +YA LAL+DG+AEITSD I++LI+A+GNEVE YWP+LFA + KS +K++ S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++GGGMDMFGGG+D
Sbjct: 1 MAISKAQHDELCVTYATLALFDGEAEITSDAIAALIKASGNEVEPYWPSLFAGLLGKSN-KKILDLISSGGPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANIGGGMDMFGGGSD 117
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: F0WMR0_9STRA (Uncharacterized protein AlNc14C160G7746 n=2 Tax=Albugo TaxID=65356 RepID=F0WMR0_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.170e-22 Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = 1
Query: 1 MSISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSGIEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGGADE 357
M +SK QHDELC SYA+L L+DG+AEITSD + S+I A+GNEVE YWPTLFA F++K G ++++ XXXXXXXXXXXXXXXXXXXXXXXXX +D+GGGMDMFGG D+
Sbjct: 1 MPLSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITSGGPSSGAXXXXXXXXXXXXXXXXXXXXXXXXXEEADMDLGGGMDMFGGDDDD 119
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: K3WS98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS98_GLOUD) HSP 1 Score: 93.6 bits (231), Expect = 2.990e-22 Identity = 86/118 (72.88%), Postives = 98/118 (83.05%), Query Frame = 1
Query: 1 MSISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSGIEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGGAD 354
MS+SK QHDELC SYA+L L+DG+AEITSD IS++I A+GNEV YWPTLFAS +AKS ++S+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+G GMDMFGGGAD
Sbjct: 1 MSMSKEQHDELCVSYASLVLFDGEAEITSDAISAVIAASGNEVAPYWPTLFASLLAKSDKVLELISSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE---ADLGAGMDMFGGGAD 115
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: A0A024UC28_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UC28_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 9.230e-22 Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 1
Query: 1 MSISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSGIEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGGAD 354
M+I+K QHDEL SYAAL L+DG+AEITS+ +S++I A+GNEVE YWPTLFA ++K G ++++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMFGGG+D
Sbjct: 1 MAITKEQHDELAVSYAALILFDGEAEITSEALSTVIAASGNEVEPYWPTLFAGLLSKDGKMLELITSGGAIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADLGGGMDMFGGGSD 118
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: A0A2D4BHZ5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ5_PYTIN) HSP 1 Score: 90.5 bits (223), Expect = 4.850e-21 Identity = 84/119 (70.59%), Postives = 96/119 (80.67%), Query Frame = 1
Query: 1 MSISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSG-IEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGGAD 354
M +SK QHDELC +YA L L+DG+AEITSD I+++I+A+GNEVE YWPTLFA +K G I LI S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMFGGG+D
Sbjct: 1 MVLSKDQHDELCATYATLVLFDGEAEITSDAIAAVIKASGNEVEPYWPTLFAGLFSKDGKIVDLISSGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----ADLGGGMDMFGGGSD 115
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: W4G6T9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G6T9_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 4.860e-21 Identity = 86/118 (72.88%), Postives = 99/118 (83.90%), Query Frame = 1
Query: 1 MSISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSGIEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGGAD 354
M+I+K QHDEL SYAAL L+DGDAEITS+ +S++I A+GNEVE YWPTLFA ++K G + L L S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMFGG +D
Sbjct: 25 MAITKEQHDELAVSYAALVLFDGDAEITSEALSNVITASGNEVEPYWPTLFAGLLSKEG-KLLELITSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDADLGGGMDMFGGSSD 141
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: M4B8T5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8T5_HYAAE) HSP 1 Score: 89.7 bits (221), Expect = 1.080e-20 Identity = 76/113 (67.26%), Postives = 93/113 (82.30%), Query Frame = 1
Query: 4 SISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSGIEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFG 342
+ISK QHDELC SYA++ L+DG+ EITS+ I++++ A+GNEVE YWPTLFAS ++K G ++S+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX+DMGGGMDMFG
Sbjct: 4 TISKEQHDELCVSYASMMLFDGEHEITSEAINTIVTASGNEVEPYWPTLFASLLSKEGKILDLISSGGAASGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFG 116
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Match: A0A8K1CSL3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSL3_PYTOL) HSP 1 Score: 89.4 bits (220), Expect = 1.420e-20 Identity = 79/119 (66.39%), Postives = 97/119 (81.51%), Query Frame = 1
Query: 1 MSISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLFASFIAKSGIEKLILSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGGADE 357
M +SK QHDELC SYA+L L+DG+AE+TSD ++++I+A+GNEVE YWPTLFA ++K G ++S+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMFGGG +
Sbjct: 1 MVLSKEQHDELCVSYASLILFDGEAELTSDALTTVIKASGNEVEPYWPTLFAGLLSKEGKVLELISSGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XDLGGGMDMFGGGGSD 116 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2497.6795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2497.6795.1 >prot_H-paniculata_contig2497.6795.1 ID=prot_H-paniculata_contig2497.6795.1|Name=mRNA_H-paniculata_contig2497.6795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp MSISKAQHDELCTSYAALALYDGDAEITSDQISSLIQATGNEVEAYWPTLback to top mRNA from alignment at H-paniculata_contig2497:10336..12360- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2497.6795.1 ID=mRNA_H-paniculata_contig2497.6795.1|Name=mRNA_H-paniculata_contig2497.6795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2025bp|location=Sequence derived from alignment at H-paniculata_contig2497:10336..12360- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2497:10336..12360- >mRNA_H-paniculata_contig2497.6795.1 ID=mRNA_H-paniculata_contig2497.6795.1|Name=mRNA_H-paniculata_contig2497.6795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig2497:10336..12360- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |