mRNA_H-paniculata_contig2497.6794.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2497.6794.1
Unique NamemRNA_H-paniculata_contig2497.6794.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: A0A6H5L0R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R0_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 3.290e-82
Identity = 131/183 (71.58%), Postives = 149/183 (81.42%), Query Frame = 1 
Query:    1 MGCVASQHTRGFSVHDASKNEVDEQLAMMQEEESNHYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIELRGEAVNAAARVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASEAFAANEEDMLMARARTSGM 549
            MGC +SQ      V +A+KNEVDEQL  +QEEE  HYK+LLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHG+AIRRNTIQ MQAI+EA V L I L GEA  AA RV  LDE  +L+PE+V+D+ LLW +  ++ AY ERH+YWLLDAAAYYFDNV RF SE+FA NEEDMLMARARTSG+
Sbjct:    1 MGCESSQP---MVVSNAAKNEVDEQLERLQEEERTHYKILLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGLAIRRNTIQSMQAILEATVVLGIPLEGEAAAAAGRVLMLDEGTDLSPEIVQDVVLLWHNGGVRAAYGERHRYWLLDAAAYYFDNVERFGSESFAPNEEDMLMARARTSGI 180
[Close]
BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: D8LSD7_ECTSI (GPA6, alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD7_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.850e-74
Identity = 118/174 (67.82%), Postives = 139/174 (79.89%), Query Frame = 1 
Query:    1 MGCVASQHTRGFSVHDASKNEVDEQLAMMQEEESNHYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIELRGEAVNAAARVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASEAFAANEEDML 522
            MGC +SQ      V +A+KNEVDEQL  + EEE  HYK+LLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHG+AIRRNTIQ MQAI+EA + L I L GEA  AA RV  LDE  +L+P++V+D+ LLW +  ++ AY ERH+YWLLDAAAYYFDNV RF SE+FA NEED++
Sbjct:    1 MGCESSQP---MVVANAAKNEVDEQLERLHEEERTHYKILLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGLAIRRNTIQSMQAILEATMVLGIPLEGEAAAAAGRVLMLDEGTDLSPDIVQDVVLLWHNGGVRAAYGERHRYWLLDAAAYYFDNVERFGSESFAPNEEDIM 171
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BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: A0A6S9GGW2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GGW2_HETAK)

HSP 1 Score: 145 bits (365), Expect = 7.730e-39
Identity = 84/185 (45.41%), Postives = 117/185 (63.24%), Query Frame = 1 
Query:    1 MGCVASQHTRGFSVHDASKNEVDEQLAMMQEEESNHYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIELRGEAVN-AAARVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASEAFA-ANEEDMLMARARTSGM 549
            MGC AS   +  +  + +  EVD  LA  Q EE N +K+LLLG GE+GKSTV+KQ+K IYK G+   E+  +  AIRRN I  MQ I+EA+  L I++  E ++ AA RV+++   A LTP++ ++I  LW D  ++  Y  R +YWLLDAA YY D V R  +  +A   EEDM+M R RT+G+
Sbjct:    1 MGCGASSIVKMETTAEGA--EVDRLLAEAQAEEENLFKILLLGAGESGKSTVVKQIKMIYKNGVSKKEKEEYIGAIRRNAIDVMQTILEAMDTLSIDVSKEELSEAATRVKEIAADATLTPDLAQNIADLWADAGVQACYERRAEYWLLDAAPYYLDEVLRLGAADYADPTEEDMIMTRVRTTGI 183
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BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: A0A835Z6Q6_9STRA (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.530e-38
Identity = 79/184 (42.93%), Postives = 114/184 (61.96%), Query Frame = 1 
Query:    1 MGCVASQHTRGFSVHDASKNEVDEQLAMMQEEESNHYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIEL-RGEAVNAAARVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASEAFAANEEDMLMARARTSGM 549
            MGC  ++ T      DA+  EV++QL   Q++E   +K+LLLG GE+GKSTV+KQ+K IYKG +   E+  +  AIRRN I  MQ +++A+    IEL R  + +AAARV   D  A L+  +  D+T LW DE ++  Y  R ++WLLDA+ YYF+   R A   +   +EDM+M R RT+G+
Sbjct:    1 MGCALAKPTLAT---DATTAEVEKQLQEAQDKEQYQFKILLLGAGESGKSTVVKQVKLIYKGVVTAKEKEEYTSAIRRNVIDSMQTMLDAMESFGIELARPGSGDAAARVRGADAEAALSEALAADVTALWADEGLRACYERRDEFWLLDASHYYFEEAMRLAEPDYEPTDEDMIMTRIRTTGI 181
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BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: D8LTN0_ECTSI (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN0_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.900e-37
Identity = 79/187 (42.25%), Postives = 111/187 (59.36%), Query Frame = 1 
Query:    1 MGCVASQHTRGFSVHDASKNEVDEQLAMMQEEESNHYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIELRG---EAVNAAAR-VEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASEAFAANEEDMLMARARTSGM 549
            MGCV S         DA+ NEVD+QL  +   +  H KVLLLG GE+GKSTV+KQ+K IYKGG+   E+  +  AIRRN I+ MQ +I+ +  L + L+G   E + AA   +  L     LTPE+ +D++ LW DE ++E ++ R ++W LDA  YY     R A       +EDM+M R RT+G+
Sbjct:    1 MGCVNSIRIMDA---DAATNEVDKQLEELALADQRHVKVLLLGAGESGKSTVVKQVKMIYKGGVSKKEKDDYARAIRRNVIESMQTLIDTLGTLGLALKGDDQEGLKAAKENIALLTPEDTLTPEIAEDVSKLWADEGMQELWSRRSEFWALDATPYYLQEARRLADPELEVTDEDMIMTRTRTTGI 184
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BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: D8LBA2_ECTSI (GPA4, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 5.290e-37
Identity = 80/185 (43.24%), Postives = 109/185 (58.92%), Query Frame = 1 
Query:    1 MGCVASQHTRGFSVHDASKNEVDEQLAMMQEEESNHYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIELRGEAVNAAA--RVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASEAFAANEEDMLMARARTSGM 549
            MGC +S       V  +   ++ E   M  E   NH+K+LLLG GE+GKSTVLKQ+K IY+G I   + +   MAIR+N+I+CMQ ++ A+   +I L G A NA    RV +  E    TP V  DI  LW D  ++EAY  + +YWLLD A+YYFDN  R     F   +ED++M R RT+G+
Sbjct:    1 MGCSSSVPEEA-KVSASVDQQLGEYNKMRAENSRNHFKILLLGAGESGKSTVLKQVKMIYRGRIADDDLQQCVMAIRKNSIECMQGVLRAMDTFEITL-GLAENAPRKKRVREFAEEGVFTPAVADDIASLWADPGVREAYGRQSEYWLLDGASYYFDNALRLGQADFVPTDEDVIMTRIRTTGI 183
[Close]
BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: A0A7S2UY10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY10_9STRA)

HSP 1 Score: 132 bits (331), Expect = 7.020e-36
Identity = 71/165 (43.03%), Postives = 100/165 (60.61%), Query Frame = 1 
Query:    1 MGCVASQHTRGFSVHDASKNEVDEQLAMMQEEESNHYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIEL-RGEAVNAAARVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASE 492
            MGC +S         D    EVD+ L   Q+EE N +K+LLLG GE+GKSTV+KQ+K IYKGG+   E   + +AIRRN I+CMQ ++EA+  L+I+L + E    A  ++ +   A L P++   I  +W DE ++  Y+ R +YWLLDAA YYF  + R   E
Sbjct:    1 MGCCSSSVK--VMQTDEQTAEVDQMLQQAQQEEENLFKILLLGAGESGKSTVVKQIKLIYKGGVSKKEIAEYTVAIRRNAIECMQTVLEAMDTLEIKLVKEELAGDAQMIKDIGPDATLDPKIAAAIANVWTDEGVQACYSRRDEYWLLDAAIYYFTEIHRLGEE 163
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BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: A0A835ZKP0_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKP0_9STRA)

HSP 1 Score: 135 bits (339), Expect = 6.570e-35
Identity = 73/159 (45.91%), Postives = 101/159 (63.52%), Query Frame = 1 
Query:   76 LAMMQEEESNHYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIELRGEAVNAA-ARVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASEAFAANEEDMLMARARTSGM 549
            ++   E++  + K+LLLG GE+GKSTVLKQ++ IYKG +   + R    AIRRN I+ MQA+++A+    I L  EA  AA  R+  L E + LT +V  DIT LW D  +K  Y +R  YWLLDAAAYYF+ V R +   +   EED++M R RT+G+
Sbjct:    5 MSSSDEQQLQNIKILLLGAGESGKSTVLKQVRMIYKGRMSAQDVRQCVEAIRRNAIESMQAVLQAMKVYGIPLEDEAKAAARTRIIGLSEDSALTKDVADDITALWNDGGVKACYEKRDLYWLLDAAAYYFNEVQRISDPKYEPTEEDVIMTRVRTTGI 163
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BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: A0A835YY90_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY90_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.190e-34
Identity = 68/149 (45.64%), Postives = 96/149 (64.43%), Query Frame = 1 
Query:  106 HYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIELRGEA-VNAAARVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASEAFAANEEDMLMARARTSGM 549
            ++K+LLLG GE+GKSTVLKQ++ I+KG +   + R    AIR+N+++CMQA+++A+    I L  EA   A  R+  + E    + +V  DIT LW D  +K  Y +R  YWLLDAAAYYFD V R A   F   E+D++M R RT+G+
Sbjct:   28 NFKILLLGAGESGKSTVLKQVRLIHKGKMTAKDIRQCTDAIRKNSVECMQAVLQAMTVHSIPLANEANAEARTRILTIQEDTTFSQQVADDITQLWSDTGVKACYEKRDLYWLLDAAAYYFDEVQRIADPGFEPTEDDVIMTRVRTTGI 176
[Close]
BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Match: A0A482SN96_9ARCH (Guanine nucleotide-binding protein subunit alpha n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SN96_9ARCH)

HSP 1 Score: 129 bits (324), Expect = 1.340e-33
Identity = 72/187 (38.50%), Postives = 109/187 (58.29%), Query Frame = 1 
Query:    1 MGCVASQHTRGFSVHD---ASKNEVDEQLAMMQEEESNHYKVLLLGPGEAGKSTVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIELRG-EAVNAAARVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDAAAYYFDNVGRFASEAFAANEEDMLMARARTSGM 549
            MGC  S    G  + +    ++NE ++ L   +EEE   +K+LLLG GE+GKSTV+KQ+K IY    P  E++ +  A++RN I+ MQ ++ A   L I L   +   A+ ++  LD  + +T +    I  LW+D  I++ Y  R +YW +D   YY + V R A  +FA NEEDM+MAR RT+G+
Sbjct:    1 MGCTVSVQPGGKLIANNKVQAENEAEKLLKQSREEEKYIFKILLLGAGESGKSTVVKQIKIIYDVNEPTYEKQKYKQALQRNVIEAMQTLLSAAKQLNIPLANPDLEEASEKIIALDSDSRITLQQAPMIDQLWKDVGIQKVYARRDEYWNMDGTPYYLNEVYRIADNSFAPNEEDMIMARIRTTGI 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2497.6794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0R0_9PHAE3.290e-8271.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSD7_ECTSI1.850e-7467.82GPA6, alpha subunit of a heterotrimeric G protein ... [more]
A0A6S9GGW2_HETAK7.730e-3945.41Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835Z6Q6_9STRA1.530e-3842.93GPA5, alpha subunit of a heterotrimeric G protein ... [more]
D8LTN0_ECTSI3.900e-3742.25GPA5, alpha subunit of a heterotrimeric G protein ... [more]
D8LBA2_ECTSI5.290e-3743.24GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A7S2UY10_9STRA7.020e-3643.03Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZKP0_9STRA6.570e-3545.91GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A835YY90_9STRA1.190e-3445.64GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A482SN96_9ARCH1.340e-3338.50Guanine nucleotide-binding protein subunit alpha n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2497contigH-paniculata_contig2497:423..7687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.7
Seed ortholog evalue1.7e-59
Seed eggNOG ortholog2880.D8LSD7
Preferred namegpaH
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
GOsGO:0001664,GO:0003674,GO:0003824,GO:0003924,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005834,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0008150,GO:0009898,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0010810,GO:0010811,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019897,GO:0019898,GO:0022407,GO:0022409,GO:0023051,GO:0023052,GO:0030155,GO:0031234,GO:0031683,GO:0032092,GO:0032101,GO:0032103,GO:0032991,GO:0040012,GO:0040017,GO:0043393,GO:0043937,GO:0043938,GO:0044093,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044877,GO:0045595,GO:0045785,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051094,GO:0051098,GO:0051099,GO:0051716,GO:0065007,GO:0065009,GO:0071944,GO:0098552,GO:0098562,GO:0098796,GO:0098797,GO:1900120,GO:1900122,GO:1902494,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1905360
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
Ec32 ortholog descriptionGPA6, alpha subunit of a heterotrimeric G protein
Ec32 orthologEc-21_003300.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Exons5
Model size552
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2497.6794.1prot_H-paniculata_contig2497.6794.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2497 423..7687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.4211166-CDS-H-paniculata_contig2497:422..4951622929732.4211166-CDS-H-paniculata_contig2497:422..495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 423..495 -
1691480987.1984496-CDS-H-paniculata_contig2497:422..4951691480987.1984496-CDS-H-paniculata_contig2497:422..495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 423..495 -
1622929732.4473858-CDS-H-paniculata_contig2497:1323..14301622929732.4473858-CDS-H-paniculata_contig2497:1323..1430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 1324..1430 -
1691480987.2134836-CDS-H-paniculata_contig2497:1323..14301691480987.2134836-CDS-H-paniculata_contig2497:1323..1430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 1324..1430 -
1622929732.472734-CDS-H-paniculata_contig2497:2024..21861622929732.472734-CDS-H-paniculata_contig2497:2024..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 2025..2186 -
1691480987.2210171-CDS-H-paniculata_contig2497:2024..21861691480987.2210171-CDS-H-paniculata_contig2497:2024..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 2025..2186 -
1622929732.4912064-CDS-H-paniculata_contig2497:6292..63881622929732.4912064-CDS-H-paniculata_contig2497:6292..6388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 6293..6388 -
1691480987.2293086-CDS-H-paniculata_contig2497:6292..63881691480987.2293086-CDS-H-paniculata_contig2497:6292..6388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 6293..6388 -
1622929732.5170095-CDS-H-paniculata_contig2497:7573..76871622929732.5170095-CDS-H-paniculata_contig2497:7573..7687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 7574..7687 -
1691480987.243106-CDS-H-paniculata_contig2497:7573..76871691480987.243106-CDS-H-paniculata_contig2497:7573..7687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2497 7574..7687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2497.6794.1

>prot_H-paniculata_contig2497.6794.1 ID=prot_H-paniculata_contig2497.6794.1|Name=mRNA_H-paniculata_contig2497.6794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MGCVASQHTRGFSVHDASKNEVDEQLAMMQEEESNHYKVLLLGPGEAGKS
TVLKQLKCIYKGGIPLAEQRMHGMAIRRNTIQCMQAIIEAIVPLQIELRG
EAVNAAARVEKLDEAAELTPEVVKDITLLWRDEAIKEAYNERHKYWLLDA
AAYYFDNVGRFASEAFAANEEDMLMARARTSGM*
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mRNA from alignment at H-paniculata_contig2497:423..7687-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2497.6794.1 ID=mRNA_H-paniculata_contig2497.6794.1|Name=mRNA_H-paniculata_contig2497.6794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7265bp|location=Sequence derived from alignment at H-paniculata_contig2497:423..7687- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTGTGTTGCTTCGCAGCACACGCGGGGTTTCTCTGTCCATGATGC
GTCGAAAAATGAGGTCGATGAGCAGTTGGCCATGATGCAAGAGGAGGAAA
GCAACCATTACAAGGTGAGACCGTATAACAATGAAAGAGCTCACAGACCC
CTAGAACACAGGTCCGTCTTGTAAGCATAATCTAGTCGCGACCAGCCGGT
GTATACAGCAGTAGGTGTTGTCGTGGTGGGTGCTTCTCCCAAGGTGGTGG
CGAGACTGGGACACGATGCGACGTCGGTGGGGGGTCGTGCCCAAGCTAAC
AACTAGCTGTTTATCGGGTGGGCGAGATCAGCTGCATCGGAGTGTCTTTT
TTTTACCGCGTTTCGCGTTATTTCTGTGTACCTCAAAACAAGCGTGTAAC
CAAGGTGCACTCGAGCATCGGGTATCGGTCATTTGGTTTCCATCGCAAAA
CATATGTGACATGTACAGAGCAATTCATCATTGTGCACTCCTCATGAACA
CGCAGTTGAGGTTGTTGCGATAGAATGGAGATGATATTCGTGGTGTTGGT
GATGTCGTCGTCAGTTGTCATGTGTATACACGCGCAACGGTTTGTATGCT
GAGGTGTGTCGAATATAGAATAACCAATATCTTTCGTGCGCCATATGAAG
GATGCCTGATGTGATGGTCCTGAGAGGCAACCGGGGCACCTATAGAGAGC
CCGCCCTTTCTGTGTTCAGTGGGAGCACGCTAAAGTGCTTCTCTGTTACA
ATTTATACGCACCACCCGTGTGTAGTGTACGGTACTATACTGAAATATTG
AACCGCTCCTCCATACCCTGGCTTTTGGGAACTTGCTTGCGTATACACTT
CAACTTTGCTGTCTCGAAACCTTGAAACAACCCTTGCCTACTAGTGCTTC
TCTTGTCTCAGTGTGTCCGTCACTTCTGTCTTTTTCCAGAGTATGTAGAA
ATGTTGTTTTCGTCCCGTCGTTTTGCATGACAACTTGCATGCCAATGAAA
TTCGCCTCTGAGCTTACATAATCCGCAAGCAAGCACGCATGTATGATACC
AACATCATGCTGGGCTGACTGCGGTATGTAATGTTGGTGGACTGCTCTCT
GTCCGTTCGTGCTCGCACACACATGCGCAAGTACACGCGCATGGCGAGCA
TTCAGATGGTCTGACATCGAAGATATATCTGTTCGTCTCCTTTTTGATAT
GCCGTACTTCCTAAAAACATGATGACAGAAACACGGGGATCTTCATGCCA
AAGCTGATCTTGCTCATTGTTGTTGTGCACACGCATGCGATGATTGAAGG
TGTTGCTGCTGGGACCTGGAGAGGCGGGGAAGTCCACTGTGCTCAAACAG
CTCAAGTGCATATATAAGGGTGGGATTCCGCTGGCGGAGCAAAGGGTGGG
TAACGAGCGACGAAAAGAAGCGAAATCGCGACCTGCTTACGAAGTTTTTG
ATTTTTGAAATATTGTGTACCTCGCTTACTGAAGCTAGCAATCTGTTGAG
GGAAATAGGGCCGCCAGAAGATTGACCACCAGCTAGTGCCGGTAGCGTAC
CGTTCACAGTTTGTTTTGTTGGTCTGCACAGCTCGGAGACTGGTGATGCT
GAAGGCTCTGAAGTGTCTGCTCTACATCGCAATGCCTGGTGCCAGCCATA
CCTTGGTGGTAGCGCTGTTTTCATCTTTGCTCCAAATTGGCTATATTTTT
CGCTCCGTGCAACCGCTCTCTTTCCTTCCTTTAAACTGTCTGTTAAGTAC
TACGTTGCACGCTGCAGTACCAACGGCATGAAACAGGCCTTGTTGATAGG
AAATGCTATAGCGAAGGACAAATTACAGCGGAGCACCGTGATGGACTGTA
GTATCATACGTGGTAGATTTTTCCTAAGACGCAAGCAGTGTCTATTTTTT
TTTATGTTAGTGACTTGCCATTCCTCTCGCATAATAGGAGGGCACCAAAT
TTTGAAGGGGTAGGTACAGACTTCTCACTTTTGTTGAATGTAAAGCTAAG
CGGCACATGTACGACGTCCATACATACGCATACGTAAGCTTACCCCGTTA
TCAACCTTGGACAGAACCTCATGCGTTCGTATGTCGGTTGTTCGGTTTCA
TGCACCCGTGTTGAACCTGCGGTTGAGGATGTCGTTACTTACATGGAAAC
CTAATTGAGAATACAAGGCCTAAATTCAACAACAGCAAGGTGCAGATGTT
GCGTTTGCCCACACGAGTGGCGAAAAAACGTTCATCCACCCGTCCTCTAT
GCGTGACCATCGGAACACTTGTAAGACACCAAACAGAGCCGCAAAATCTA
GTGGTGGTACGGACATGTATCGCCTGCACCCATATGTGTACAATGTGCAC
GAAGCATGATAACGCATCAGTGTACCGCCAATTTTTGTCTTTTATCGAAA
AAACGAAAGCAATGGTTGACCCACCCTTTTGTTGATCGCCGGCGCCCCTT
GGTGCTCCCACCGCGTGAGTTGATCCAACGCCGACTTATCATTTATACGA
TAAGCCTAATCCTAATGATTTATACGATAAACCTAGAGCACAGCGTGCAC
TGCCAGAAGATTTCAAATTGGCGCCGTTCGGACGACGTCGGTAATTTGAG
CGATAGCTTGTTTATGGCATTATTCTGCCGGCGGGAGTGGCTTCCCCCGC
ATGTGCTGTTAGTCCAGCTGTTGGTTAACGAGAACGCGTAGTGATGGAAT
ACTCGCAATCAGAACAAATTCATCGCGGTGTGTCGAATCGTTTGGGCCCT
GGGAAGAGAGGAGAAGGGGTAGTTTTTCATAACGGGAAGTGGGTTTTGAC
CGTCTGTTGCTAGATTATGACCAATCAATTTCCAGCTGTATCTAGGTTTT
GACCAATCCATTTGTTCAACCGTTCGAGTCTATTCTCCAACTATTGACCA
TTACTGTGTCCACTCGAAAGGGCGTAGAAAGTTATACCCATTGGGGCTGG
TCTCCAGGTCTCCAAACAAGCCCTGCCCGATCCCCTCCTGAACAACATGA
CAAACGCCGAGGTAGGAAGCCGCCGCTGTTCGTTCGGACAGCCAGTCCAG
CACTGAGACCCACAGTACATACAGCACGGACAGGAAGTTGGCATGGAAAC
GACTGCAGCGCTCGACACTGTTATTGGTTTCATCTCCTGTTACCATAGAA
CCTCCGACACTAAAAGGAAAGGTTAATCCTCACATGCTTTACGGGGAAAG
AGAGGGTCGACTACACGAATTTTTCAAATAAATTTCTCAGAGTAAAGCAG
CCAATGGGCTGGCTGCATGACCGTGGCTATGTGGCACCTGCTGAAAGCAC
GGGTTTCACGGTTGACGCCGTGACTACGTGATTCCTTTGTTCTGCCCTAG
TGCGTGGGTTTTGGGGGCAAACTCACCGCTACCGTCAGTGACTCAGCATG
TGCCTTATGCTTCGCGTTCCCACCTAGTACTGCAATCACGATCCCCAGGA
CCATGCGAACTCCTGTGTGTACCGTCTGAACAACAATAGCTAGCTACCCC
ACATTAAAATCGTCTCGTTATGGGGTAAGTACTTACCCCGATGTTAAATT
GGTTCTGACCTACGATCCAAAATGGCTTCCAACTTTCAAATTGCCCGGGT
GAAACATGGCCTAACACCAAAGAGGCATATGTAATGGCAACATCATCTTC
CTTAAGGTTAGAGCCGTTGTACCAGCCATTCGGGGCATGTAATGCTGATA
GACGTTGGAGGGTACATCCCGAACAGGTATAGGTCCCATCGCGGGCATTG
GCAATATACACGGCAGTTACCGGGCACGTTATGGGACTGTAGCGGTACCC
CGACAGAAATGAAACAGCATTATAGTCGGCCCACTGCCCCTCTGTCCCCT
TTCCCCCCTAGGTTTCTGCCTCCCCTGCGCGTCTATAGCTGATCTCATTT
ATGGGCGTTGGCAATCAGGCGTTCCTGGTAGTGTTGTCAAAAGAGAGCGA
TTTTCACGAATTTGCCGTCTTTTTTTTTTCTCAGTCTGTGATGATGAAGG
GTTGGTTGCCTGCAGCTGATGCCCCACATCGCTGGGCGGGGGTACTTGTA
TGTCACTCTTACTTTTTAATTATTTTATGCAGTCAGTTTTGATATGTGCC
TATGTACACATGTACATGCTTTATTTAACACGAATAGTCGCACCCTTCTC
GAAATTTACAACCCGCATTATTCATAGGCCGCTTTTTCTATTTAGGCCGT
CTCTTATGGGGTGGATTTTTTTTCACGATTTTTTTTTATCGGGGAGGATC
GACAGCTTGCCGACTAAAAAAAATCGCAAATGTTTCACTGGCGAATGAGA
TATCCGCAAAATAAAAATAAAAATGTGACGTCAAAGAGATACACAGGCGT
GTTTTCCTGGATGATATTTCATAGCCCACAGTAAAACAAACGCCTGCGCT
GTTCACAGATGCCAGTATGAAGAACATGCACAATCCAAGGTGTGAGCCCA
GCCACCCTATGGAAGATCTGCAGGAATGGCAATCGTGTACATGGGCGGCG
CTCGCTGCTGTAGTGGCGGCCGTCGATATTGTAGACGAAGACGGCAGACG
CAGTCGACGCATGGGTGCAGGGGAGCTTGTTATCTTTCCGAACAGACTGT
GAGTCGCCCACCCAGGAAGATCCAGCTGGGGGGTTTCCTTCACCCAGCGG
AAGAAGCTGTCAATGGCGAAATCCTTGTATGGCTGTACCGTCTTGTCGTA
CTTCTCGCTCAGGGGCAGGGTTCCACCGTTCTTCTTAATAAACGTACAAG
CGTACCACTGTGGTGGTACATTCTGTAGAATGATCAAATGCATCTTGCAC
ACACCCGAATGTAATCCCTGAGCCCTCATTTCCTTCCACACTCATTCCAC
GCAAGGGTTTGCCTGGATAAATATTGCAGTGGATGGTGCATTCATGGTGG
TCCGCTTTCACAGGATGAGAACTCGTGTGTTCGAAATCCTCTCAACTTTA
ATTGCGTCGCTAGCAAAAACGCCATCAAACATTTAACTAAATAATGACAT
TTTATGTTTTTGACTCACCCGATCCCATTAAGATGAGCTATCAATTTTTC
CCAACATATATTTTTTCTCAGTAAAGAAGATCGAGATTTCATGATTTTGA
CTGGAAAAAAAATTGACACGATAAGAGATGGCCTTCGTCCGAAAAAATTC
CTCTCTGGAAAAAATAGTGAATCTCCCCGCATTTACTCTAATTTTTTTCT
TATGAAAAACGGAGAAAGAGAGTCGAACGGAGCCTTGAGTTTCGTTCGGG
CTGCCGGGTGAACTATCTCAGCACGAGTATAAATCATACTCTATTGTACT
GGCTATGTATATCGGGACAAGTCAGAGAACAGGTTGGCTGCTGAATATGG
GTTCGTACGTCCAGTAGATATTTAGCTCATCCCCGCCCCCCCCCCTCTTC
CTCTCTCCTATCTTGCCGCTTCGCGGGCCATGTGTGTCGATGGATGATGA
CTAATTATTGTACGACTGGCTGACCGGGCCTTTGTGCGGCTTCTGCTGCA
GATGCATGGAATGGCGATCAGACGCAACACGATCCAATGCATGCAGGCTA
TCATAGAGGCGATAGTGCCTTTGCAGATAGAGCTAAGGGGGGAGGCCGTT
AACGCGGCCGCACGCGTGGAGAAGCTGGACGAGGCTGCAGAGCTAACTCC
GGAGGTTGTCAAGGTGAAGACCGCTTCAATCTTAATCATTACCAATTGGT
CATATTTCCTCTTGCAGTTGAGCATTGGTAGCATTTTTCTCATTTTTAGA
TTCAAAAGCGTTTGTTTGCGGTGTATTTTACGAGTAATTTTTGGAAGGGA
AGGGAAGGGAGGGGAGTTGAGTTGGACGTATGCTGCACAGGTATAGTGGG
CAACACAGCCTTTTGTCCGGAGCGTAGTCACTGTATTGTCACCGCACGCG
CTCGGTCATGCTGAGCATCCTAGGCACGTCCATGTGTTGCTACATGTCGA
TACTTTTTGCCCTTCCATGTATGTGTCTTGTAGAGGGGGGGGGACTCTGT
TGGCATGGTCTAGACTTGTCCAAGGGTATTTGGTGCCCTGGTGAGCCCAT
ACCCAAATACACCCATTCTTGGCATATAACAACATCAAACGTTCTGGACT
CACGGCATGGTAGACTAGCTCACGCAACGCTATCGTAGTGGTGGCCCCTA
AATTGAAGTATGTGTGTATATATATACTTGCAGGTGTTCCCAAATTTCAC
CACTGTCGCTCGGATTGTTCCTTCGCTTTCGGCTTTTGCGTTTCTTCTTG
TGCGAAGGACATCACGTTGCTGTGGAGGGATGAAGCGATTAAAGAGGCTT
ACAACGAGCGGCATAAGTACTGGCTGCTGGACGCGGCAGCCTATTATTTT
GACAACGTCGGGAGGTGCGCGACAAAGACAGAGAAACAGAGAGGACGTAA
CATGGAGCATTAAGAGTAGTTCACTTTTTTTTTTTTTTTTTTGCGATGCC
CAATAGCTCGATAGCTCTACAGGGTAGGACATGCTCGAGATTGCCCTTGA
TTTTATGGTCGAACCCTTCGAGGCGCGAGATTAGCGCTAGTCAACCACTG
TTGTCCTTCTCAGGCGAGAGGAGAGATTGACTTCCTTGCCTCTGTAGTAA
TTGCCTCTCTTGCTATTTTTCACCAACTATCGCCTTTTTGGATGATGGAA
AAACAATTGCTCCAAAAGTGGATCCTGGTTCAAATCTCAACAGCGCGACG
CATTTGGGGTTAATAAAGGCCTGACGGTTCACTACAGTACCCCTCCATGG
AGCTGTTGCTTTTTCGTGATATTCCGTACTTGCGCGCTGTTGGCGCTGCT
CATGGTTGTGCAGTGGGTGCCGGTCGATTATTGATAGAACACAAAAAACT
GTTTTTGAAAAAAACGCGGCCAGATAGTTACAGGTTTTGCCCCTCGCCCC
CCGTTTTGACGTCGTCACCCCAGATATGCAATTTCAGTTTTTTTCTCGTT
CTGTCATTTTTGCTGCACCTCCGTGAAGAGTATCGAACGATGAGAAAAAT
ACCTGCTGTAGCGCCCAAACCGTGTGCACCTACCTCTCACCTGTGCTGGT
TTTGCAAGCACTTTTTTTTTTTTTTTTGCTTTCTTACGCTTGCGTTTGTT
TGTGTGGATCATGATAGTTATGGTGATGACATATTATATGTACTATGGTG
TTAGATGATGACCCGTTCGGGTGTCGTTTGTTATGGGGGCAGATTCGCTT
CGGAGGCATTCGCAGCGAACGAGGAGGATATGCTCATGGCACGAGCACGA
ACATCGGGAATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2497:423..7687-

>mRNA_H-paniculata_contig2497.6794.1 ID=mRNA_H-paniculata_contig2497.6794.1|Name=mRNA_H-paniculata_contig2497.6794.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig2497:423..7687- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTGTGTTGCTTCGCAGCACACGCGGGGTTTCTCTGTCCATGATGC
GTCGAAAAATGAGGTCGATGAGCAGTTGGCCATGATGCAAGAGGAGGAAA
GCAACCATTACAAGATGGGGTGTGTTGCTTCGCAGCACACGCGGGGTTTC
TCTGTCCATGATGCGTCGAAAAATGAGGTCGATGAGCAGTTGGCCATGAT
GCAAGAGGAGGAAAGCAACCATTACAAGGTGTTGCTGCTGGGACCTGGAG
AGGCGGGGAAGTCCACTGTGCTCAAACAGCTCAAGTGCATATATAAGGGT
GGGATTCCGCTGGCGGAGCAAAGGGTGTTGCTGCTGGGACCTGGAGAGGC
GGGGAAGTCCACTGTGCTCAAACAGCTCAAGTGCATATATAAGGGTGGGA
TTCCGCTGGCGGAGCAAAGGATGCATGGAATGGCGATCAGACGCAACACG
ATCCAATGCATGCAGGCTATCATAGAGGCGATAGTGCCTTTGCAGATAGA
GCTAAGGGGGGAGGCCGTTAACGCGGCCGCACGCGTGGAGAAGCTGGACG
AGGCTGCAGAGCTAACTCCGGAGGTTGTCAAGATGCATGGAATGGCGATC
AGACGCAACACGATCCAATGCATGCAGGCTATCATAGAGGCGATAGTGCC
TTTGCAGATAGAGCTAAGGGGGGAGGCCGTTAACGCGGCCGCACGCGTGG
AGAAGCTGGACGAGGCTGCAGAGCTAACTCCGGAGGTTGTCAAGGACATC
ACGTTGCTGTGGAGGGATGAAGCGATTAAAGAGGCTTACAACGAGCGGCA
TAAGTACTGGCTGCTGGACGCGGCAGCCTATTATTTTGACAACGTCGGGA
GGACATCACGTTGCTGTGGAGGGATGAAGCGATTAAAGAGGCTTACAACG
AGCGGCATAAGTACTGGCTGCTGGACGCGGCAGCCTATTATTTTGACAAC
GTCGGGAGATTCGCTTCGGAGGCATTCGCAGCGAACGAGGAGGATATGCT
CATGGCACGAGCACGAACATCGGGAATGTGAATTCGCTTCGGAGGCATTC
GCAGCGAACGAGGAGGATATGCTCATGGCACGAGCACGAACATCGGGAAT
GTGA
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