mRNA_H-paniculata_contig24967.6792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24967.6792.1
Unique NamemRNA_H-paniculata_contig24967.6792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24967.6792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24967contigH-paniculata_contig24967:673..1972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929732.307507-CDS-H-paniculata_contig24967:672..7681622929732.307507-CDS-H-paniculata_contig24967:672..768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24967 673..768 +
1691480987.1670027-CDS-H-paniculata_contig24967:672..7681691480987.1670027-CDS-H-paniculata_contig24967:672..768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24967 673..768 +
1622929732.3203828-CDS-H-paniculata_contig24967:1891..19721622929732.3203828-CDS-H-paniculata_contig24967:1891..1972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24967 1892..1972 +
1691480987.177439-CDS-H-paniculata_contig24967:1891..19721691480987.177439-CDS-H-paniculata_contig24967:1891..1972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24967 1892..1972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24967.6792.1prot_H-paniculata_contig24967.6792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24967 673..1972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24967.6792.1

>prot_H-paniculata_contig24967.6792.1 ID=prot_H-paniculata_contig24967.6792.1|Name=mRNA_H-paniculata_contig24967.6792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MDETGDGQGEGSSGDDDDDDDDSSDGDLPPAQIVFAEEPSLENDEGKKDN
YDNNNDGDG
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mRNA from alignment at H-paniculata_contig24967:673..1972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24967.6792.1 ID=mRNA_H-paniculata_contig24967.6792.1|Name=mRNA_H-paniculata_contig24967.6792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1300bp|location=Sequence derived from alignment at H-paniculata_contig24967:673..1972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGACGGGGGACGGACAGGGGGAGGGTAGCTCAGGCGATGATGA
TGATGATGATGATGACAGCTCGGACGGCGACCTTCCTCCTGCACAGGTTC
GATCTTCTCACATACAGTATATAATGTCATCTTCTATCTTCTTTGTCTGT
TTGGTATTTCTATTTTGTGATTTTTGCCCCGCTTTCGCTGCGGAGTGTTT
GGACGAGATCTTTACAAAGAAATACGCAACCTTGACTTCGCACACATCCA
ACGACGAAGAGAGTCAAATTTAGACGCTTAAGTAATACGACTGCAATAGC
CTGAGTTCTAGGGATTTGTATCAGTGCCGATATTGTCCAGTATATCATCC
TATACGAATGATCTATCTATCGTTTTTTGGGACCGATTATCAGTCCTTGC
TGTTACCGGCTATATAGCTATATTCGTGCCATTATCCAGCCCTGGACGTT
CGATGACACATGGACATGGGACCCACAGCTGAACACAGGCGGCACAATAA
GCTCAGCAAGCCCGCCAGATACATAAACATCTCCAGCCTCACAGTCGTAT
GGTATACATTCAAGCGTTAGGAGTATCCACCCTTTTACTATAAAACGAGT
GTCGATGACGACCAATCGCTATTTTCAATGTTACCAAATATATCTTGAAA
ATGTTTTGGGTACTCTATTTTTACCTTCTGTTTCAGAGCTGCTGGATCTA
AATATATTCTTAAATCAATCTCTACCGCAGTTGCCAGCGCACGACTGTTC
GCCTCATATCTTCAAAACCAGGTTCCGCAAGATGCAATGCGACGACTGTC
CACCTGCCCCACAGCGCAGGGGAACACCAGGCTAACGCCACATAAAGAAG
GCGCCCAGGAATTAGTGGATGATCGATCTCGGCTGGCTAATGTCAGCTTG
ACCCCTAAGGGTTTGACTATGGGGCACACGCCAGGTCTTTTGTACGATCA
TCACACACGCACACACATACACACATACCTCGACATGAGAGTGCGTGCCA
AGGGACACAAGCGACTTGACTTGCGTTTGTTTTGTCCACTAATTTTGGTT
GAATGCCTTAGTGGTATGTATACCATTTCCGTTTTTCTACAAGAACTTAT
CGGTAGATGCTTTCACCTGCCGCCTCACCTTTCGTCTCAACGATCACCTC
ATCTTTCGCCTTATCGGTCGCCTTCCCTATCGCCTTGCCGGGGGGGGGGG
GGGGGTGAAATAAAAAAAGATCGTTTTTGCTGAAGAGCCTAGCTTGGAAA
ATGACGAAGGTAAAAAAGATAATTATGATAATAATAATGATGGTGATGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig24967:673..1972+

>mRNA_H-paniculata_contig24967.6792.1 ID=mRNA_H-paniculata_contig24967.6792.1|Name=mRNA_H-paniculata_contig24967.6792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig24967:673..1972+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGACGGGGGACGGACAGGGGGAGGGTAGCTCAGGCGATGATGA
TGATGATGATGATGACAGCTCGGACGGCGACCTTCCTCCTGCACAGATGG
ATGAGACGGGGGACGGACAGGGGGAGGGTAGCTCAGGCGATGATGATGAT
GATGATGATGACAGCTCGGACGGCGACCTTCCTCCTGCACAGATCGTTTT
TGCTGAAGAGCCTAGCTTGGAAAATGACGAAGGTAAAAAAGATAATTATG
ATAATAATAATGATGGTGATGGTATCGTTTTTGCTGAAGAGCCTAGCTTG
GAAAATGACGAAGGTAAAAAAGATAATTATGATAATAATAATGATGGTGA
TGGT
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