mRNA_H-paniculata_contig2496.6790.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: UPI001BB20916 (PHD finger protein 21A-like isoform X1 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB20916) HSP 1 Score: 64.3 bits (155), Expect = 4.670e-7 Identity = 22/59 (37.29%), Postives = 36/59 (61.02%), Query Frame = 2
Query: 83 ESECEVHRVVCLVCEEVGARVTCEECGFAFHLGCLEPPLASVPDDGWACRMCAVHRRSR 259
+ E + H +C VC ++G + C+ C +HLGCL+PPL+SVP W+C C + + +
Sbjct: 333 KQESDGHEDICAVCRQIGELLMCDTCNLVYHLGCLDPPLSSVPPGAWSCPQCKLKGKDK 391
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: UPI0018ACCE54 (autoimmune regulator n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=UPI0018ACCE54) HSP 1 Score: 63.9 bits (154), Expect = 6.300e-7 Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 2
Query: 113 CLVCEEVGARVTCEECGFAFHLGCLEPPLASVPDDGWACRMCAVHRRSRRRKSIVEIVAMEFPVARGGAPKKGPNCSMCLS 355
C VC++ G + C+ C AFHLGCL PPL S+P W C C+ HR R E+V + P+ N S+ ++
Sbjct: 273 CAVCKDGGELICCDGCPRAFHLGCLIPPLTSIPSGSWQCEWCSGHRVKR------ELVRLPLQALSAQTPQTNTNSSLSVT 347
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: UPI001FB7DB8A (autoimmune regulator isoform X1 n=2 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB7DB8A) HSP 1 Score: 63.9 bits (154), Expect = 6.350e-7 Identity = 24/54 (44.44%), Postives = 31/54 (57.41%), Query Frame = 2
Query: 113 CLVCEEVGARVTCEECGFAFHLGCLEPPLASVPDDGWACRMCAVHRRSRRRKSI 274
C VC + G + C+ C AFHLGCL+PPL S+P W C C HR R + +
Sbjct: 279 CTVCRDGGELICCDGCPRAFHLGCLDPPLTSIPSGSWQCEWCCGHRVKREKAQV 332
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: UPI001885BB48 (autoimmune regulator n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI001885BB48) HSP 1 Score: 60.8 bits (146), Expect = 3.300e-6 Identity = 32/100 (32.00%), Postives = 48/100 (48.00%), Query Frame = 2
Query: 113 CLVCEEVGARVTCEECGFAFHLGCLEPPLASVPDDGWACRMCAVHRRSRRRKSIVEIVAMEFPVARGGAPKKGPNCSMCLSRTGYVQCCQVCTAPFHPRC 412
C VC++ G + C+ C AFHL CL+PPLASVP W C+ C+ ++ A+++ + G G + S CL C+ P+H C
Sbjct: 171 CAVCKDGGELICCDGCPRAFHLTCLDPPLASVPSGSWCCKDCSGTGHQVQKSQH----ALQWADSCGFCHLGGEDLSRCLQ----------CSQPYHHHC 256
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: A0A158QV74_MESCO (Uncharacterized protein (Fragment) n=3 Tax=Mesocestoides corti TaxID=53468 RepID=A0A158QV74_MESCO) HSP 1 Score: 61.6 bits (148), Expect = 5.950e-6 Identity = 27/75 (36.00%), Postives = 38/75 (50.67%), Query Frame = 2
Query: 59 GKVMGWAYESECEVHRVVCLVCEEVGARVTCEECGFAFHLGCLEPPLASVPDDGWACRMCAVHRRSRRRKSIVEI 283
G V G H C VC + G + C+ C FHL CL PPLA+VP+ W C +CA + + +K I ++
Sbjct: 457 GPVRGDILREGFTAHDDFCRVCRQSGEVLCCDNCPAVFHLSCLTPPLAAVPNTSWHCPLCATEQEAYGKKKIPKL 531
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: A0A0R3U458_MESCO (Uncharacterized protein n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3U458_MESCO) HSP 1 Score: 59.7 bits (143), Expect = 2.020e-5 Identity = 27/84 (32.14%), Postives = 41/84 (48.81%), Query Frame = 2
Query: 83 ESECEVHRVVCLVCEEVGARVTCEECGFAFHLGCLEPPLASVPDDGWACRMCAVHRRSRRRKSIVEIVAMEFPVARGGAPKKGP 334
+ E + H+ C C + G + CE C ++H+GCL+PPLA +P+ W C C R I+ E P GG ++ P
Sbjct: 187 QGEKDEHQEFCSECRDGGDLICCENCPASYHIGCLDPPLAQIPEGVWLCPRCGCKPLKGRVSKILFWRWREPPKRAGGDARQPP 270
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: A0A667XCE8_9TELE (Bromodomain PHD finger transcription factor n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667XCE8_9TELE) HSP 1 Score: 59.7 bits (143), Expect = 2.300e-5 Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 2
Query: 113 CLVCEEVGARVTCEECGFAFHLGCLEPPLASVPDDGWACRMCAVHR 250
C VC +G + CE C +HL C++PPLA VP+D W C +C H+
Sbjct: 347 CRVCHRLGDLLCCETCSAVYHLECVKPPLAEVPEDEWQCEICVAHK 392
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: UPI00117606CC (LOW QUALITY PROTEIN: nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=UPI00117606CC) HSP 1 Score: 59.7 bits (143), Expect = 2.350e-5 Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 2
Query: 113 CLVCEEVGARVTCEECGFAFHLGCLEPPLASVPDDGWACRMCAVHR 250
C VC +G + CE C +HL C++PPLA VP+D W C +C H+
Sbjct: 354 CRVCHRLGDLLCCETCSAVYHLECVKPPLAEVPEDEWQCEICVAHK 399
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: A0A7S0H0E0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H0E0_9EUKA) HSP 1 Score: 57.0 bits (136), Expect = 3.870e-5 Identity = 31/123 (25.20%), Postives = 52/123 (42.28%), Query Frame = 2
Query: 113 CLVCEEVGARVTCEE--CGFAFHLGCLEPPLASVPDDGWACRMCAVHRRSRRRKSIVEIVAMEFPVARGGAPKKGPNCSMCLSRTGYVQCCQVCTAPFHPRCMDKPRDSRDKQGYTCADCHSP 475
C+VC++ G + CE C +FHLGCL PPLA +P+ W C C ++ + ++ + G + CC C+ +H +C+ D + + C C +P
Sbjct: 53 CVVCKKKGLLLCCENYTCTKSFHLGCLNPPLAELPEGTWFCDEC----HDKQHDDVCDVCGLG----------------------GELLCCDRCSLAYHTKCVGL--DCPPEGHWECRRCKTP 147
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Match: UPI00201521E3 (autoimmune regulator isoform X1 n=9 Tax=Alosa TaxID=34772 RepID=UPI00201521E3) HSP 1 Score: 57.4 bits (137), Expect = 6.510e-5 Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 2
Query: 113 CLVCEEVGARVTCEECGFAFHLGCLEPPLASVPDDGWACRMC 238
C VC++ G + C+ C AFHLGCL+PPL S+P W C C
Sbjct: 240 CTVCKDGGELICCDGCPRAFHLGCLDPPLTSIPSGSWRCGQC 281 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2496.6790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2496.6790.1 >prot_H-paniculata_contig2496.6790.1 ID=prot_H-paniculata_contig2496.6790.1|Name=mRNA_H-paniculata_contig2496.6790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=493bp MVGKVMGWAYESECEVHRVVCLVCEEVGARVTCEECGFAFHLGCLEPPLAback to top mRNA from alignment at H-paniculata_contig2496:18719..20824+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2496.6790.1 ID=mRNA_H-paniculata_contig2496.6790.1|Name=mRNA_H-paniculata_contig2496.6790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2106bp|location=Sequence derived from alignment at H-paniculata_contig2496:18719..20824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2496:18719..20824+ >mRNA_H-paniculata_contig2496.6790.1 ID=mRNA_H-paniculata_contig2496.6790.1|Name=mRNA_H-paniculata_contig2496.6790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2958bp|location=Sequence derived from alignment at H-paniculata_contig2496:18719..20824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |