mRNA_H-paniculata_contig2495.6784.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2495.6784.1 vs. uniprot
Match: D7FNV0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV0_ECTSI) HSP 1 Score: 165 bits (418), Expect = 5.790e-41 Identity = 159/416 (38.22%), Postives = 201/416 (48.32%), Query Frame = 3
Query: 219 MLATRPSTAESAAR------AREEKEVPGIERAALKEERKPLLDLDDVERLELELAACFDAPPPPPLNMRREGIAGSAVVPWTGSAQNPPVRMGYVPSPPTKVVAATAAVDLQQQRLLRMQRHQEELTHEPEQEQAQRQTTVSDFSSLYS--PHRAVSSSQVYPEFVPATAPSTQAMRTNSVPAQGRAAAAPSETVQAASAQVAERRETVA-----------------------------NRTVDLSTGSAAVSADESSAEVVEELLSENEKLRLIIQDLKEELLRVSVQNENGGAQVVTRPESAGARAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGRSEIQFKCENCPQWLRVPGNAQLVYCPTCSHTSQMTADATVH 1355
M+ATRP ++ A+EEK VPG+ + AL+EERKPLLDLDDV +LE ELAACFDAPPPPPLN+RRE + V W A++ V P + V AA A +L Q +Q QE+ + +++QAQ T VSDFSSLYS PHR S+ Q+YP P +AP + MR P +A+ A R + A R+ D+S SS EVVEELLSENE+LR IIQ++ +EL R SV G + + A XXX XXXXXXXXX + + FKCENCPQWL+VP +AQLVYCPTC HTSQMT+ +T+H
Sbjct: 1 MMATRPQSSGEGGXXXXXXXAQEEKSVPGVSKDALREERKPLLDLDDVAQLENELAACFDAPPPPPLNIRREEPVAT-VSTWMPMAEHRYVETHVAPPTASDVAAARARGELPQL----LQEGQEQEGGQLQEQQAQA-TRVSDFSSLYSAAPHREESTGQLYPVLAP-SAPFSDTMRIPMPPPAVXXXXXXXXRAPSAAFGAAVRDDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXARERSQDVS----------SSGEVVEELLSENERLRAIIQEMSDELERGSVPAIGGSTAAAGATQGRQSSAARAXXXAATSATPTERLLGRYPGAQAEAARRRXXXXXXXXXGHRQDGGARPQTQVQPQVQAAVGAGTFVHFKCENCPQWLKVPVHAQLVYCPTCGHTSQMTSASTIH 399 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2495.6784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2495.6784.1 >prot_H-paniculata_contig2495.6784.1 ID=prot_H-paniculata_contig2495.6784.1|Name=mRNA_H-paniculata_contig2495.6784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=427bp MLATRPSTAESAARAREEKEVPGIERAALKEERKPLLDLDDVERLELELAback to top mRNA from alignment at H-paniculata_contig2495:12759..19496+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2495.6784.1 ID=mRNA_H-paniculata_contig2495.6784.1|Name=mRNA_H-paniculata_contig2495.6784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6738bp|location=Sequence derived from alignment at H-paniculata_contig2495:12759..19496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2495:12759..19496+ >mRNA_H-paniculata_contig2495.6784.1 ID=mRNA_H-paniculata_contig2495.6784.1|Name=mRNA_H-paniculata_contig2495.6784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2562bp|location=Sequence derived from alignment at H-paniculata_contig2495:12759..19496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |