mRNA_H-paniculata_contig24940.6782.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24940.6782.1
Unique NamemRNA_H-paniculata_contig24940.6782.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 5.510e-49
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:    4 DPNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG 279
            DP MPKSRKLLAVPFVGKDVPSRASEFSHPDVV+GLTIL YRYEGLRMSDFRA LR LKEEMEE+Q+GPYHLRP+C+TLVRWVTLAGG+VRG
Sbjct: 3336 DPKMPKSRKLLAVPFVGKDVPSRASEFSHPDVVVGLTILAYRYEGLRMSDFRANLRALKEEMEEEQSGPYHLRPACRTLVRWVTLAGGTVRG 3427
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: A0A7S4DAQ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAQ0_HETAK)

HSP 1 Score: 137 bits (346), Expect = 1.070e-36
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    7 PNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG 279
            P MP+SR+LLAVPFVGKDVPSRASEFSHPDV IGLTIL YRYEGLR +DF   L +LKE M+E+ +GPY  R SCQT  +WVTLAGG VRG
Sbjct:   43 PQMPRSRRLLAVPFVGKDVPSRASEFSHPDVAIGLTILSYRYEGLRRTDFAILLGLLKEAMDEE-HGPYLQRKSCQTYTKWVTLAGGRVRG 132
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: A0A7S3JZH5_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZH5_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.480e-34
Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    4 DPNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG 279
            DP  PKSR+L AVPFVGKDVPSRASEF+ PDVVIGLTILGYRYEGLR SDF   LR L+E M  + NGPY  RPSCQ   RWV+LAGG VRG
Sbjct: 3449 DPFTPKSRRLCAVPFVGKDVPSRASEFAQPDVVIGLTILGYRYEGLRPSDFWLVLRQLREAMLGE-NGPYAKRPSCQLWARWVSLAGGRVRG 3539
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: A0A7S2WEW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEW4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.760e-34
Identity = 58/91 (63.74%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    4 DPNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVR 276
            DP MP+SR+LLAVPF+GKDVPS+ASEF+HPDVVIG+T+L YRYEGLR +DF+  +  L E+M E+  GPY  R +C+   RWV LAGG VR
Sbjct:   32 DPKMPRSRRLLAVPFMGKDVPSQASEFAHPDVVIGMTVLAYRYEGLRWTDFKLMMGRLYEDMAEEY-GPYQDRTTCKKFARWVALAGGRVR 121
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: A0A7R9UG66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG66_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.760e-34
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    4 DPNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG 279
            DP MP+SR+L+AVPFVGKDVPSRASEFSHPDV IGLTIL YRYEGLR SDF   +  +++ ME Q+ GPY  RPSC+T + WV  AGG+VRG
Sbjct: 2856 DPRMPRSRRLVAVPFVGKDVPSRASEFSHPDVTIGLTILAYRYEGLRRSDFIQVIGSIRDRME-QEYGPYPKRPSCKTFIDWVEKAGGAVRG 2946
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: A0A2R5FYY4_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY4_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.430e-33
Identity = 66/93 (70.97%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 VDPNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG 279
            +DP MPK+RKLLAVPF GKD PSRASEFSHPDVVIGLTIL YRYEGLRMSDF   LR L+E +EE   GPY  R + +  +RWV+LAGG VRG
Sbjct: 3146 LDPLMPKNRKLLAVPFTGKDCPSRASEFSHPDVVIGLTILAYRYEGLRMSDFIWLLRHLRERLEEDV-GPYIKREASRLYIRWVSLAGGRVRG 3237
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: A0A2R5GI29_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GI29_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.180e-33
Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    1 VDPNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG 279
            +DPNMP+SR+LLAVPFVGKDVPSRASEF+HPDVVIGL IL YRYEGLR +DF+  L  L+  +E +  GPY  R +C+   RWV LAGG VRG
Sbjct: 3459 LDPNMPESRRLLAVPFVGKDVPSRASEFAHPDVVIGLAILAYRYEGLRFTDFQTVLEGLRARVETE-TGPYRKREACKLYSRWVRLAGGRVRG 3550
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: W7TMJ4_9STRA (EF-Hand 1, calcium-binding site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMJ4_9STRA)

HSP 1 Score: 126 bits (317), Expect = 7.410e-32
Identity = 61/92 (66.30%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    4 DPNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG 279
            +P MPK+RKLLAVPFVGKDVPSR SEFSHPDVVIGLTIL YRYEGLR++DF   + ML+E + E++ GP   RPS    V+WV  AG +VRG
Sbjct: 2714 NPRMPKTRKLLAVPFVGKDVPSRESEFSHPDVVIGLTILAYRYEGLRLTDFINVMTMLRENLFEEEFGPMASRPSWLLFVKWVEEAGATVRG 2805
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: A0A2D8PPK5_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PPK5_9PROT)

HSP 1 Score: 125 bits (315), Expect = 1.350e-31
Identity = 61/92 (66.30%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    4 DPNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG 279
            D   P SR+L AVPFVGKDVPSRASEFS PDVVIGLTIL YRYEGLR++DF   LR+L+E M  +  GPY  RP+C+   RWV +AGG VRG
Sbjct:  869 DARTPVSRRLCAVPFVGKDVPSRASEFSQPDVVIGLTILAYRYEGLRVTDFAIVLRLLRETMAAE-TGPYEKRPACKKFARWVRVAGGRVRG 959
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BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Match: A0A7S4FH17_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FH17_9EUGL)

HSP 1 Score: 115 bits (288), Expect = 3.090e-31
Identity = 54/93 (58.06%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 VDPNMPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRATLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG 279
            V  N P+SR+LLAVPF+GKDVPS ASE+SHPDV+IGLT+L YRYEGLR  +FR  +  L+E M  Q++GP+H R +C+  V+W+   G SV+G
Sbjct:   36 VKDNTPRSRRLLAVPFIGKDVPSSASEWSHPDVLIGLTVLAYRYEGLRTENFRQVVLDLQEAMR-QESGPHHTRRACKLYVKWLRRVGRSVKG 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24940.6782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI4_ECTSI5.510e-4989.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4DAQ0_HETAK1.070e-3673.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3JZH5_9STRA1.480e-3473.91Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S2WEW4_9STRA1.760e-3463.74Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7R9UG66_9STRA3.760e-3468.48Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2R5FYY4_9STRA2.430e-3370.97Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A2R5GI29_9STRA6.180e-3366.67Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
W7TMJ4_9STRA7.410e-3266.30EF-Hand 1, calcium-binding site n=2 Tax=Monodopsid... [more]
A0A2D8PPK5_9PROT1.350e-3166.30Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A7S4FH17_9EUGL3.090e-3158.06Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24940contigH-paniculata_contig24940:381..962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue9.4e-40
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size279
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24940.6782.1prot_H-paniculata_contig24940.6782.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24940 381..950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.0528524-CDS-H-paniculata_contig24940:380..5531622929731.0528524-CDS-H-paniculata_contig24940:380..553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24940 381..553 -
1691480986.580993-CDS-H-paniculata_contig24940:380..5531691480986.580993-CDS-H-paniculata_contig24940:380..553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24940 381..553 -
1622929731.0865393-CDS-H-paniculata_contig24940:856..9501622929731.0865393-CDS-H-paniculata_contig24940:856..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24940 857..950 -
1691480986.5980914-CDS-H-paniculata_contig24940:856..9501691480986.5980914-CDS-H-paniculata_contig24940:856..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24940 857..950 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929731.1027877-UTR-H-paniculata_contig24940:950..9621622929731.1027877-UTR-H-paniculata_contig24940:950..962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24940 951..962 -
1691480986.6066854-UTR-H-paniculata_contig24940:950..9621691480986.6066854-UTR-H-paniculata_contig24940:950..962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24940 951..962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24940.6782.1

>prot_H-paniculata_contig24940.6782.1 ID=prot_H-paniculata_contig24940.6782.1|Name=mRNA_H-paniculata_contig24940.6782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MPKSRKLLAVPFVGKDVPSRASEFSHPDVVIGLTILGYRYEGLRMSDFRA
TLRMLKEEMEEQQNGPYHLRPSCQTLVRWVTLAGGSVRG
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mRNA from alignment at H-paniculata_contig24940:381..962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24940.6782.1 ID=mRNA_H-paniculata_contig24940.6782.1|Name=mRNA_H-paniculata_contig24940.6782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at H-paniculata_contig24940:381..962- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATCCCAATATGCCCAAGTCTCGCAAGCTATTGGCTGTGCCCTTCGT
CGGCAAGGACGTCCCTTCTAGAGCGTCTGAGTTCAGTCATCCAGACGTCG
TCATTGGTGGGTGTACAGTACGCACGTTATGCGTGGCGAGAGCATGGTGT
TGTATTGTTTGCCGAATCAAAACCCACCTCTGGCACATGGATCGGGCACT
TGGCTTGTTCGAACCGCAATTCATATGAGCTGTGTCGTACAATGGCCGTG
ACACTCGCGAGTCCGCCGGAAGTCTCGATCTGACGTGACCGCGGACTATC
CGATACCCCTATAACATACGCTACCCTGCCGGAAAGGGCACCAGTTTCGC
CGCATGTTGATACCAGTAACTTTTAATACTAACGAGGCGGACCGTTCAAC
GATCATTAGGTCTGACCATATTGGGCTACCGGTACGAGGGATTGCGCATG
TCAGACTTCAGGGCCACTCTGCGGATGCTGAAGGAGGAAATGGAAGAGCA
GCAAAATGGACCGTACCACCTCAGACCTTCGTGTCAAACCCTCGTGCGAT
GGGTCACTCTGGCTGGAGGTTCCGTGAGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig24940:381..962-

>mRNA_H-paniculata_contig24940.6782.1 ID=mRNA_H-paniculata_contig24940.6782.1|Name=mRNA_H-paniculata_contig24940.6782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig24940:381..962- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCAAGTCTCGCAAGCTATTGGCTGTGCCCTTCGTCGGCAAGGACGT
CCCTTCTAGAGCGTCTGAGTTCAGTCATCCAGACGTCGTCATTGATGCCC
AAGTCTCGCAAGCTATTGGCTGTGCCCTTCGTCGGCAAGGACGTCCCTTC
TAGAGCGTCTGAGTTCAGTCATCCAGACGTCGTCATTGGTCTGACCATAT
TGGGCTACCGGTACGAGGGATTGCGCATGTCAGACTTCAGGGCCACTCTG
CGGATGCTGAAGGAGGAAATGGAAGAGCAGCAAAATGGACCGTACCACCT
CAGACCTTCGTGTCAAACCCTCGTGCGATGGGTCACTCTGGCTGGAGGTT
CCGTGAGAGGGGTCTGACCATATTGGGCTACCGGTACGAGGGATTGCGCA
TGTCAGACTTCAGGGCCACTCTGCGGATGCTGAAGGAGGAAATGGAAGAG
CAGCAAAATGGACCGTACCACCTCAGACCTTCGTGTCAAACCCTCGTGCG
ATGGGTCACTCTGGCTGGAGGTTCCGTGAGAGGG
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