mRNA_H-paniculata_contig1104.678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM) HSP 1 Score: 134 bits (336), Expect = 1.080e-34 Identity = 77/195 (39.49%), Postives = 113/195 (57.95%), Query Frame = 2 Query: 245 YRGMVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDLCITNCYG----LEGFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIREWVREGILMFEIRADWRPT 817 YR +VG+LMY T TRPD A AV + + + +K +YL+T DL + G L G+ DA+WA D++ R+S TG VF LNG AIS S++Q + S+ AEY A A +E ++LR LL +G C G+TTIF+DN+ I L+K +TKHI + +H +RE V + +++ E ++PT Sbjct: 35 YRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHRVAAKRILKYLKTTQDLGLVFNGGTKGELIGYADANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLE----YKPT 225
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: B6V6Z8_DROME (Polyprotein n=1 Tax=Drosophila melanogaster TaxID=7227 RepID=B6V6Z8_DROME) HSP 1 Score: 141 bits (355), Expect = 3.220e-34 Identity = 82/198 (41.41%), Postives = 111/198 (56.06%), Query Frame = 2 Query: 233 NSTEYRGMVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDLCITNCYGLE---GFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIREWVREGILMFEIRADWRPT 817 N T+++ ++GSLMY +RPD + V + +R DP ED + +KH RYL DL IT E GF DADWA D+ DRKS +G F L G A S S KQ ++ S+ AEY A A KE +YLR LL IG+ G TI DN S+ +++K V +TKHI + +H +VRE + EI ++ PT Sbjct: 1099 NITQFQSLIGSLMYLAVLSRPDILHTVSKLSQRNTDPHSEDETAAKHVLRYLSATVDLKITYSKSGEQVMGFADADWANDLSDRKSYSGYAFFLGGSAFSWTSAKQSVVAMSSTEAEYVALSTAAKEAVYLRRLLLEIGWSLDGPITICGDNISSHHIAKNPVHHKRTKHIDIKYH----FVREKVECNEIILEYVPT 1292
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM) HSP 1 Score: 139 bits (350), Expect = 3.690e-34 Identity = 79/195 (40.51%), Postives = 113/195 (57.95%), Query Frame = 2 Query: 245 YRGMVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDLCIT----NCYGLEGFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIREWVREGILMFEIRADWRPT 817 YR +GSLMYA GTRPD +YAV + M +P + +K RYL+ + +T N G+EGF DADW + R+SI+G VF+++GGA+S S+KQ ++ S+ AEY A A KE L+ R LG I TT++ DN+SAI L+K ++ +TKHI + +H IR+ V G E+ + PT Sbjct: 330 YREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGGDNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERG----EVDIVYCPT 519
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 134 bits (337), Expect = 6.330e-34 Identity = 76/195 (38.97%), Postives = 113/195 (57.95%), Query Frame = 2 Query: 245 YRGMVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDLCITNCYG----LEGFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIREWVREGILMFEIRADWRPT 817 YR +VG+LMY T TRPD A AV + + + + +K +YL+T DL + G L G+ DA+WA D++ R+S TG VF LNG AIS S++Q + S+ AEY A A +E ++LR LL +G C G+TT F+DN+ I L+K +TKHI + +H +RE V + +++ E ++PT Sbjct: 94 YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLE----YKPT 284
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: A0A060STY7_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060STY7_PYCCI) HSP 1 Score: 132 bits (333), Expect = 6.560e-34 Identity = 78/185 (42.16%), Postives = 103/185 (55.68%), Query Frame = 2 Query: 239 TEYRGMVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDLCITNC--------YGLE--GFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIRE 763 T Y+ MVGSLMYA GT PD A+AV Q + +P + +K RYL+ L I C + LE G+ DADWA D++DRKSI G+VF+L G I+ SRKQ+ + S+ AEY A A E +LR LL +GF G T ++ DN+SAI + TKHI + +H IRE Sbjct: 30 TLYQAMVGSLMYAALGTHPDIAHAVQQLSQYASNPGPAHITAAKRVLRYLKGTRTLGIIYCANATTDSDHPLEPLGYSDADWANDLDDRKSIAGQVFLLGGAPITWSSRKQRTVAKSSMEAEYMAMSAAASEIAWLRALLTELGFPPSGPTPLYVDNQSAIASANVQTSHACTKHIDIHYHFIRE 214
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 135 bits (340), Expect = 8.500e-34 Identity = 77/195 (39.49%), Postives = 116/195 (59.49%), Query Frame = 2 Query: 221 GRSGNSTEYRGMVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDLCITNCYG----LEGFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIREWVREGILMFE 793 G + + T ++ +VGSL Y T TRPD Y+V+ R M++P + +K RY++ I G L GFVD+D+A DV+DRKS +G VFML GGA+S S+KQ ++ ST AE+ AA + ++LR++LG IG+ TT+F DN S I LSK V ++KHI V ++ +R+ V E +++ + Sbjct: 148 GDAADPTMFKQLVGSLRYL-TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYKQGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLK 341
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: A0A438FT54_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FT54_VITVI) HSP 1 Score: 138 bits (347), Expect = 9.720e-34 Identity = 85/213 (39.91%), Postives = 126/213 (59.15%), Query Frame = 2 Query: 164 KPLGAVVLDLDAGVQ*ISSG--RSGNSTEYRGMVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDLCITNCYG----LEGFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIREWVREGIL 784 K +V+ + G++ SG + +ST Y+ +VGSLMY T TRPD +AV+ R M++P +K FRYL+ D I G L GF D+D+A D++DRKS +G VFMLN GAI+ S+KQQ++ ST AE+ AA + + ++LR LL + +G T I+ DN SAI LSK V ++KHI V +H +R+ ++G++ Sbjct: 288 KDCNSVITPSEVGLKLSKSGAGKRVDSTLYKQIVGSLMYL-TSTRPDIMHAVNLISRYMENPTEVHLLAAKRIFRYLKGTVDFGILYKRGERSSLIGFSDSDYAGDLDDRKSTSGAVFMLNSGAITWSSKKQQIVTLSTTEAEFVAAASSSCQAIWLRRLLEVLYNQQQGPTVIYCDNLSAIKLSKNLVLHGRSKHIDVRYHFLRDLCKDGVI 499
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: UPI001EAF45B3 (secreted RxLR effector protein 161-like n=2 Tax=Osmia bicornis bicornis TaxID=1437191 RepID=UPI001EAF45B3) HSP 1 Score: 130 bits (327), Expect = 1.200e-33 Identity = 77/185 (41.62%), Postives = 105/185 (56.76%), Query Frame = 2 Query: 233 NSTEYRGMVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVP--DLCITNCYG-LEGFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIREWVREG 778 N YR ++GSLMY T TRPD A+AV + D+P E + +K RY++ ++ T L GF DADW ++DR+S TG VF L GGAIS SRKQ+ + S+ AEY A EA KE++Y R L + G +T I DN+SA ++K V +TKHI + +H +RE V G Sbjct: 13 NQVPYRSLIGSLMYLATSTRPDIAHAVSALSQFNDNPGEEHWKAAKRVLRYIKRTEKMEIVFTKTENELIGFSDADWGASIDDRRSYTGYVFRLFGGAISWSSRKQKTVAMSSAEAEYMALSEAAKESIYQRRFLTEV-VGKLKTTLILCDNQSAGLMAKNPVYHERTKHIDIRYHFVRESVERG 196
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: UPI001F042557 (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F042557) HSP 1 Score: 131 bits (329), Expect = 1.280e-33 Identity = 76/197 (38.58%), Postives = 109/197 (55.33%), Query Frame = 2 Query: 191 LDAGVQ*ISS---GRSGNSTEYRGMVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDLCITN---CYGLEGFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIRE 763 +DA V+ + +S +++ Y+ MVGSL+YA TRPD AV + P + K FRYL+ L + LEG+ DADWA D +DR+S +G VF+++GGAIS S+KQ + ST +EY A A +E ++LR L+ + C +TTI EDN I +SK V +TKHI + H +RE Sbjct: 1 MDASVKLVKEDGHSKSVDASRYQSMVGSLIYAAIATRPDITQAVTTLAKFNTAPNEAHLTAVKRIFRYLKGTCKLSLQYQKISIDLEGYSDADWASDTDDRRSTSGNVFIISGGAISWASKKQPTVALSTSESEYIALCYATQELVWLRQLMKDLQIDCTAATTIHEDNLGTIAISKNPVLHKRTKHIDIKHHFVRE 197
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Match: A0A1J3K6I4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3K6I4_NOCCA) HSP 1 Score: 129 bits (325), Expect = 1.320e-33 Identity = 75/176 (42.61%), Postives = 103/176 (58.52%), Query Frame = 2 Query: 269 MYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDLCIT----NCYGLEGFVDADWAEDVEDRKSITGRVFMLNGGAISCCSRKQQLIMWSTRGAEYAAA*EAGKETLYLRDLLGSIGFGCRGSTTIFEDNESAINLSKGSVPLCKTKHIGVCWHGIREWVREGIL 784 MYA TRPD A+AV R M PC E + K RY+R D +T + + ++G+ D+D+A D++ R+SITG VF G IS S Q ++ ST AEY A EA KE L+L+ ++G +GF + IF D++SAI L+K SV +TKHI V +H IR+ V EG L Sbjct: 1 MYAMVSTRPDVAHAVGLVSRFMSSPCKEHWMAVKWVLRYIRNTTDFKLTFTKSDKFEVKGYCDSDYAADLDRRRSITGYVFQAGGNTISWRSGLQHIVALSTTEAEYMALVEAAKEALWLKGIVGELGFP-QEKVEIFCDSQSAICLAKNSVHHERTKHIDVRYHFIRDTVAEGSL 175 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1104.678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1104.678.1 >prot_H-paniculata_contig1104.678.1 ID=prot_H-paniculata_contig1104.678.1|Name=mRNA_H-paniculata_contig1104.678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp MVGSLMYAWTGTRPDAAYAVHQAVRRMDDPCGEDFSTSKHTFRYLRTVPDback to top mRNA from alignment at H-paniculata_contig1104:15450..16281+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1104.678.1 ID=mRNA_H-paniculata_contig1104.678.1|Name=mRNA_H-paniculata_contig1104.678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=832bp|location=Sequence derived from alignment at H-paniculata_contig1104:15450..16281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1104:15450..16281+ >mRNA_H-paniculata_contig1104.678.1 ID=mRNA_H-paniculata_contig1104.678.1|Name=mRNA_H-paniculata_contig1104.678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig1104:15450..16281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |