mRNA_H-paniculata_contig24934.6779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24934.6779.1
Unique NamemRNA_H-paniculata_contig24934.6779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: D7G934_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G934_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 6.540e-66
Identity = 104/145 (71.72%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    1 VGAVVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTPVVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGISTALVFTGVSQVEDVADLPQDGVNTPTYLLEKLGSLL 435
            VGAVVVG DTSFGF+QLC+AS YIQ GA FLGTNPD ADRVG+ L+PGTGP+L +I++ASGV PVVVGKPNP+LIR++++  GL  S+TLMVGDRLDTDIMFGNAGG+S+ALV TGVS++ DV  L   G  TPTYLLE+LG+LL
Sbjct:  161 VGAVVVGLDTSFGFRQLCVASSYIQSGAHFLGTNPDVADRVGSLLMPGTGPMLTSIQTASGVAPVVVGKPNPLLIRQLMDQNGLAASKTLMVGDRLDTDIMFGNAGGVSSALVLTGVSEMSDVVGLQAGGDKTPTYLLERLGALL 305          
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: A0A836CPG6_9STRA (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.190e-49
Identity = 85/145 (58.62%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 VGAVVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTPVVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGISTALVFTGVSQVEDVADLPQDGVN-TPTYLLEKLGSL 432
            V AV VG+D SFGF+Q+ +AS Y+Q G  F+G NPDNADRVG  L PGTGPLLAAI+SASG  PV++GKPNPILI+ I+  +G+ ++RT MVGDRLDTD+ F NAGGIS+ LV TGVS   D+A L  +  +  P +++  L SL
Sbjct:  167 VQAVCVGWDRSFGFRQMSIASAYLQQGVGFIGANPDNADRVGPLLFPGTGPLLAAIQSASGAVPVIIGKPNPILIKGILAQFGMDQARTAMVGDRLDTDMAFANAGGISSVLVMTGVSTDADLAALSAERAHMAPAFVMAALASL 311          
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: A0A7S4UNH5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UNH5_GUITH)

HSP 1 Score: 134 bits (338), Expect = 9.350e-37
Identity = 68/147 (46.26%), Postives = 101/147 (68.71%), Query Frame = 1
Query:    1 VGAVVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTPVVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGISTALVFTGVSQVEDVADLP--QDGVNTPTYLLEKLGSLL 435
            +  VV G+D +F + ++ +A+LY+Q GA F+ TNPD A+RVG  L+P  G  +AA+++ +G  P VVGKP+P+LI+ +++ + L + RTLMVGDRLDTDI FG  GG+ TALV TGVS  +D+ D+   +     P ++LE L  L+
Sbjct:   76 INVVVSGWDVNFSWAKMSLAALYLQEGAHFVATNPDVANRVGKGLMPENGAQVAALKAITGRDPQVVGKPSPVLIQTLMDKFSLSKERTLMVGDRLDTDIEFGRRGGLGTALVLTGVSSRQDLQDVQHLRSMQRYPDFVLETLNDLV 222          
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: A0A7S2UZJ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZJ8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.070e-34
Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    1 VGAVVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTPVVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGISTALVFTGVSQVEDV----ADLPQDGVNTPTYLLEKLGSL 432
            +GAVV G+D  F F +L  ASLY+Q G  F+GTN D  DR+  R IPG G LL A+E++ G    VVGKP+  LI  +I    L   RT+M+GDRLDTDI FG  GG +TALV TG +   D+    + +P++ +  PTY+L  LGS+
Sbjct:   79 IGAVVCGWDLGFNFSKLATASLYLQKGCLFVGTNGDAYDRLSDRNIPGNGCLLKALETSIGKEAEVVGKPSQWLIDHLIQSNNLDPKRTIMIGDRLDTDIAFGKKGGTATALVLTGCTSPSDLHNQASPVPEEMM--PTYVLPSLGSI 224          
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: C1ECJ4_MICCC (Phosphoglycolate phosphatase (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1ECJ4_MICCC)

HSP 1 Score: 124 bits (312), Expect = 2.420e-32
Identity = 68/146 (46.58%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    4 GAVVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTP-VVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGI-STALVFTGVSQVEDVADLPQDGVNTPTYLLEKLGSLL 435
            GAV+VG DTSF + +L  ASL IQ GA F+ TNPD  D +G  L+PG G ++AA+E ASGV+P +  GKP+  L+  ++    +  +RTL+VGDRLDTDI FG AGG  +T L  +GV  +EDV    ++G + P ++++ L  +L
Sbjct:  130 GAVIVGQDTSFTYAKLAYASLAIQRGAVFVATNPDAGDAIGPGLMPGAGAIVAAVEKASGVSPEIYAGKPSAFLLE-LLKGNRVDMARTLVVGDRLDTDIAFGRAGGAGATVLTLSGVCGLEDVDAAMEEGGDIPNHIVQSLPHML 274          
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: F0VC33_NEOCL (4-nitrophenylphosphatase, putative n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VC33_NEOCL)

HSP 1 Score: 125 bits (315), Expect = 5.230e-31
Identity = 65/147 (44.22%), Postives = 89/147 (60.54%), Query Frame = 1
Query:    1 VGAVVVGYDTSFGFKQLCMASLYIQ---GGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTPVVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGISTALVFTGVSQVEDVADLPQDGVNTPTYLLEKLGSL 432
            VGAVVVG+D    + +LC+ASLY+Q   G  PF+  N D  D +G   +P  G  +AA+E  S    V VGKP+P L++ + N + L   RT++ GDRLDTDI FG   GI T LV TG + VED+  +P +  + PT +L  +G L
Sbjct:  391 VGAVVVGWDRQLSYAKLCLASLYLQRDNGALPFIAANRDAYDVIGGAKMPANGAAVAALELCSSRQAVCVGKPSPWLVQFLFNKFNLDPRRTIVCGDRLDTDIAFGKCAGIDTCLVLTGCTTVEDLVGMPANHASAPTVVLPHVGVL 537          
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: A0A7S0CUU7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CUU7_MICPS)

HSP 1 Score: 118 bits (296), Expect = 2.460e-29
Identity = 67/154 (43.51%), Postives = 99/154 (64.29%), Query Frame = 1
Query:    1 VGAVVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTP-VVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGIS-TALVFTGVSQVEDVADL-------PQDGVNTPTYLLEKLGSLL 435
            VGAV+VG D +F + +L  ASL IQ GA F+ TNPD AD +G  ++PG G ++AA+E+ASGV+P +  GKP+  L+  +  ++ +  SRTL+VGDRLDTD+ FG AGG   T L  +GVS ++DV +         +D    P ++++ L  +L
Sbjct:  148 VGAVIVGQDVAFTYAKLAYASLAIQRGAAFVATNPDAADALGPGMMPGAGAIVAAVETASGVSPEMYAGKPSAFLLELLKGNH-VDMSRTLVVGDRLDTDVAFGKAGGAGVTVLTLSGVSTLDDVDEAIEAQRAGEEDAPPVPDFIVQGLPQML 300          
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: A0A532U4J1_9CHLR (TIGR01457 family HAD-type hydrolase n=1 Tax=Chloroflexi bacterium B3_Chlor TaxID=2012489 RepID=A0A532U4J1_9CHLR)

HSP 1 Score: 116 bits (291), Expect = 2.890e-29
Identity = 58/144 (40.28%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 VGAVVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTPVVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGISTALVFTGVSQVEDVADLPQDGVNTPTYLLEKLGSL 432
            V  VVVG D    +++L +A+L I+ GA F+GTNPD        L+PGTG  LAA+E+A+G++P+ +GKP PIL+R  +   G+    T ++GDRL+TD++ G   G++T LV +G+S  E++A  P      P  + + +G L
Sbjct:  122 VDFVVVGLDRELTYEKLEIATLAIRAGATFIGTNPDTTLPTEQGLVPGTGATLAALEAATGISPLTIGKPQPILLRLAMEKVGVTPEGTAIIGDRLETDVLGGKEAGLTTILVLSGISDREELATSPYQ----PDLVFDSIGDL 261          
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: X1AGQ9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1AGQ9_9ZZZZ)

HSP 1 Score: 114 bits (284), Expect = 5.610e-29
Identity = 58/141 (41.13%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   10 VVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTPVVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGISTALVFTGVSQVEDVADLPQDGVNTPTYLLEKLGSL 432
            VV+G   S+   ++  A   I  GA F+ TNPDN  R    L+P  G L A I+ A+G  P  VGKPNP+++R  +N  G+  S+T+M+GDR+DTD++ G   G+ T LV +GVS ++D+AD P      PT++L+ +  L
Sbjct:   59 VVLGETFSYDIDKITKAIRLISDGALFVATNPDNVGREKEGLVPACGALAALIKEATGKEPFFVGKPNPLMMRFAMNFLGIHSSKTVMIGDRMDTDVISGIEAGLETILVLSGVSTIDDIADYPY----RPTHILKSIAEL 195          
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Match: A0A353H3Z9_9CHLR (Haloacid dehalogenase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A353H3Z9_9CHLR)

HSP 1 Score: 115 bits (287), Expect = 9.970e-29
Identity = 59/120 (49.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    7 AVVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTGPLLAAIESASGVTPVVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDIMFGNAGGISTALVFTGVSQVED 366
            AVVVG D S  +++L  A L I+GGA F GTNPD        LIPG G LLAA+++ +   P++ GKPNP L    +   GL    TL++GDRLDTDI+ G   G  TALV TG+S +ED
Sbjct:  125 AVVVGMDRSISYEKLKTACLLIRGGAEFYGTNPDRTFPTPEGLIPGAGSLLAALQTCTDKEPIIAGKPNPTLFEFAVKSLGLSPEETLVIGDRLDTDILGGVNAGCKTALVLTGISTLED 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24934.6779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G934_ECTSI6.540e-6671.72Haloacid dehalogenase-like hydrolase family protei... [more]
A0A836CPG6_9STRA2.190e-4958.62Haloacid dehalogenase-like hydrolase family protei... [more]
A0A7S4UNH5_GUITH9.350e-3746.26Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S2UZJ8_9STRA4.070e-3447.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
C1ECJ4_MICCC2.420e-3246.58Phosphoglycolate phosphatase (Fragment) n=1 Tax=Mi... [more]
F0VC33_NEOCL5.230e-3144.224-nitrophenylphosphatase, putative n=1 Tax=Neospor... [more]
A0A7S0CUU7_MICPS2.460e-2943.51Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A532U4J1_9CHLR2.890e-2940.28TIGR01457 family HAD-type hydrolase n=1 Tax=Chloro... [more]
X1AGQ9_9ZZZZ5.610e-2941.13Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A353H3Z9_9CHLR9.970e-2949.17Haloacid dehalogenase n=1 Tax=Anaerolineaceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24934contigH-paniculata_contig24934:2303..3074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.6
Seed ortholog evalue1.2e-52
Seed eggNOG ortholog2880.D7G934
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphoglycolate phosphatase activity
EggNOG OGsCOG0647@1,KOG2882@2759
EC3.1.3.18,3.1.3.41,3.1.3.48
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Exons2
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929730.764296-CDS-H-paniculata_contig24934:2302..25541622929730.764296-CDS-H-paniculata_contig24934:2302..2554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24934 2303..2554 -
1691480986.4542572-CDS-H-paniculata_contig24934:2302..25541691480986.4542572-CDS-H-paniculata_contig24934:2302..2554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24934 2303..2554 -
1622929730.7798934-CDS-H-paniculata_contig24934:2891..30741622929730.7798934-CDS-H-paniculata_contig24934:2891..3074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24934 2892..3074 -
1691480986.4657178-CDS-H-paniculata_contig24934:2891..30741691480986.4657178-CDS-H-paniculata_contig24934:2891..3074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24934 2892..3074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24934.6779.1prot_H-paniculata_contig24934.6779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24934 2303..3074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24934.6779.1

>prot_H-paniculata_contig24934.6779.1 ID=prot_H-paniculata_contig24934.6779.1|Name=mRNA_H-paniculata_contig24934.6779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
VGAVVVGYDTSFGFKQLCMASLYIQGGAPFLGTNPDNADRVGTRLIPGTG
PLLAAIESASGVTPVVVGKPNPILIRRIINDYGLVESRTLMVGDRLDTDI
MFGNAGGISTALVFTGVSQVEDVADLPQDGVNTPTYLLEKLGSLL
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mRNA from alignment at H-paniculata_contig24934:2303..3074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24934.6779.1 ID=mRNA_H-paniculata_contig24934.6779.1|Name=mRNA_H-paniculata_contig24934.6779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=772bp|location=Sequence derived from alignment at H-paniculata_contig24934:2303..3074- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGAGCGGTCGTGGTGGGGTATGACACATCCTTCGGGTTCAAGCAATT GTGCATGGCATCCTTGTACATACAGGGAGGAGCGCCGTTCTTGGGCACCA ACCCAGACAACGCGGATCGGGTGGGAACTCGGTTGATACCCGGCACGGGC CCGCTGTTGGCCGCAATCGAGTCCGCTTCTGGGGTAAGTGATTCGAGAGG AGCAGCATGTTAAGATATATTTTCGAAGGGACGGGGGGAGAGCGATGGGG GGAGGGTGAAGCGTACATGAGCATACTATGACATTGCTGGGAACAATGAT AATAGTATTTACATCATTCCTCAAGACAAATCCCGCACAACTGTCAAAGC ATCCGAACAGATCCGTACCATCCATCGTATTGACAACCTAGACATTGCTA CATTTCCTCATCAGCAAATATTGTGTGTGTGCTAGCGGTGTCCAACCACC TTACGGTTTACGCAATTGGCAGTAAGATCCAACCCCCCCCCCCCCCCGTC TCGTTGCACACTCGTCTCAGGTCACGCCTGTTGTGGTAGGCAAACCAAAC CCTATCCTCATCCGTCGTATCATAAATGACTACGGTCTGGTCGAATCCCG TACCCTCATGGTCGGTGATCGATTGGACACCGACATCATGTTCGGAAATG CTGGCGGCATTTCAACTGCGTTAGTATTTACAGGAGTCAGTCAAGTCGAG GATGTTGCCGATTTGCCCCAGGACGGGGTGAACACGCCCACGTATCTCTT GGAAAAATTAGGATCTTTGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig24934:2303..3074-

>mRNA_H-paniculata_contig24934.6779.1 ID=mRNA_H-paniculata_contig24934.6779.1|Name=mRNA_H-paniculata_contig24934.6779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig24934:2303..3074- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGAGCGGTCGTGGTGGGGTATGACACATCCTTCGGGTTCAAGCAATT
GTGCATGGCATCCTTGTACATACAGGGAGGAGCGCCGTTCTTGGGCACCA
ACCCAGACAACGCGGATCGGGTGGGAACTCGGTTGATACCCGGCACGGGC
CCGCTGTTGGCCGCAATCGAGTCCGCTTCTGGGGTGGGAGCGGTCGTGGT
GGGGTATGACACATCCTTCGGGTTCAAGCAATTGTGCATGGCATCCTTGT
ACATACAGGGAGGAGCGCCGTTCTTGGGCACCAACCCAGACAACGCGGAT
CGGGTGGGAACTCGGTTGATACCCGGCACGGGCCCGCTGTTGGCCGCAAT
CGAGTCCGCTTCTGGGGTCACGCCTGTTGTGGTAGGCAAACCAAACCCTA
TCCTCATCCGTCGTATCATAAATGACTACGGTCTGGTCGAATCCCGTACC
CTCATGGTCGGTGATCGATTGGACACCGACATCATGTTCGGAAATGCTGG
CGGCATTTCAACTGCGTTAGTATTTACAGGAGTCAGTCAAGTCGAGGATG
TTGCCGATTTGCCCCAGGACGGGGTGAACACGCCCACGTATCTCTTGGAA
AAATTAGGATCTTTGTTGGTCACGCCTGTTGTGGTAGGCAAACCAAACCC
TATCCTCATCCGTCGTATCATAAATGACTACGGTCTGGTCGAATCCCGTA
CCCTCATGGTCGGTGATCGATTGGACACCGACATCATGTTCGGAAATGCT
GGCGGCATTTCAACTGCGTTAGTATTTACAGGAGTCAGTCAAGTCGAGGA
TGTTGCCGATTTGCCCCAGGACGGGGTGAACACGCCCACGTATCTCTTGG
AAAAATTAGGATCTTTGTTG
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