mRNA_H-paniculata_contig24912.6771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24912.6771.1
Unique NamemRNA_H-paniculata_contig24912.6771.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: D7FHD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHD1_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 7.310e-44
Identity = 79/113 (69.91%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    1 GVWLADKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            G+  AD+ L+ GAL+ES  R++VP YRE+I+RHEAGHFL+AYLLGCPVQ CLLDPF +G   T GAQGGTVFADP  ++ M  GKLT+S+IDRFSIVLMGGIAAEAI YG SE
Sbjct:  261 GLIFADRLLLNGALSESLTRLIVPAYRERIIRHEAGHFLVAYLLGCPVQACLLDPFVLGSGLT-GAQGGTVFADPVLSKQMADGKLTKSSIDRFSIVLMGGIAAEAINYGNSE 372          
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: A0A835YLP7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP7_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.200e-38
Identity = 68/113 (60.18%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    1 GVWLADKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            GV+  D+ ++ GAL ES  RI+ P Y+ KI+RHEAGHFLLAYLLG  + GCLLDP+++ K+     QGGTVFADP+FARG+ +G +T+++IDRFSIVLM GIAAEA+ YG +E
Sbjct:  197 GVFALDRIVLKGALFESIARIINPTYKAKIIRHEAGHFLLAYLLGLGISGCLLDPWQVRKFVRG--QGGTVFADPTFARGLQSGSITKTSIDRFSIVLMAGIAAEAVVYGRAE 307          
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: A0A7S2WUW6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUW6_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.990e-31
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GVWLADKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            G +L D+ +  GAL E+A R V P YREK++RHEA HFL+AYLLGCPV+ C++  F+    +    Q GT+F DP F   M +G + RS+IDRF++++M GIAAEA +YG +E
Sbjct:  260 GFFLLDRLVFQGALFETAYRAVAPQYREKVIRHEAAHFLVAYLLGCPVESCIISAFDAMSESRFDGQAGTIFFDPEFGDQMASGNVPRSSIDRFTVIVMAGIAAEARKYGKAE 372          
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: A0A7S3FEW8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FEW8_9EUKA)

HSP 1 Score: 115 bits (289), Expect = 1.260e-29
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   16 DKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            D+AL+ GAL ES  R V PGY   +  HEAGHFL AYLLGCP++ CLLD +   +        GTVF DP   + M  G +TR  IDR+S+V+M GIAAEA + G +E
Sbjct:    2 DRALLRGALGESITRAVKPGYARTVREHEAGHFLAAYLLGCPIEACLLDVWSAARDGRFSGAAGTVFFDPELGKAMSDGTITREVIDRYSVVVMAGIAAEATQNGKAE 109          
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: A0A7S0LZG5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZG5_9CRYP)

HSP 1 Score: 117 bits (293), Expect = 3.270e-29
Identity = 56/111 (50.45%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    7 WLADKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            ++ D+AL+ GA+ ES  R++ P Y+EK+++HEAGHFLLAYLLGCP+QG  L  ++  K   SG Q G +F D   + G+   +++R AIDR+SIV+M GIAAEAI Y  +E
Sbjct:  246 FIVDRALLSGAVFESVYRLLFPQYKEKVIKHEAGHFLLAYLLGCPIQGFFLSAWDATKAGISG-QAGCIFFDNELSAGISANRVSRVAIDRYSIVVMAGIAAEAINYERAE 355          
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: A0A7S0BK55_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BK55_9RHOD)

HSP 1 Score: 113 bits (283), Expect = 6.570e-29
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 1
Query:   34 GALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            G++ ES  R  +P YREKI++HEAGH LLAYLLGCP++G ++D ++       G Q GT+F DP     +   KLT+ +IDR+SIV+MGGIAAEA+EYG +E
Sbjct:    1 GSIFESIYRFFIPEYREKILKHEAGHLLLAYLLGCPIRGYVIDAYDALLKGIPG-QAGTIFTDPRLQNELQNNKLTQKSIDRYSIVVMGGIAAEALEYGQAE 101          
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: A0A7S2ZIP3_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZIP3_9RHOD)

HSP 1 Score: 117 bits (293), Expect = 6.820e-29
Identity = 56/113 (49.56%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GVWLADKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            G +  D+A + G++ E+  R + P YREKI++HEAGH LLAYLLGCP++G ++D ++       G Q GT+F DP     +   KLT+ +IDR+SIV+MGGIAAEA+EYG +E
Sbjct:  186 GAFALDQAFLRGSIFEAIYRSLFPEYREKILKHEAGHLLLAYLLGCPIRGYVIDAYDALLKGIPG-QAGTIFTDPRLQNELQNNKLTQKSIDRYSIVVMGGIAAEALEYGQAE 297          
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: A0A7S1EHK9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EHK9_HEMAN)

HSP 1 Score: 116 bits (290), Expect = 7.450e-29
Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    7 WLADKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            +LAD+ LV GA+ ES  R++ P Y+ K+V+HEAGHFL+AYLLGCP+QG  L  ++       G Q GT+F D   +  M   K+TR++IDR+SIV+M GIAAEA+ Y  +E
Sbjct:  154 FLADRVLVSGAVLESIYRLLFPKYKSKVVQHEAGHFLIAYLLGCPIQGFFLSAWDASSAGLQG-QAGTIFFDNDLSSQMGNNKVTRTSIDRYSIVVMAGIAAEAVVYDQAE 263          
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: A0A7S0VT99_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VT99_9CRYP)

HSP 1 Score: 115 bits (289), Expect = 8.490e-29
Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    7 WLADKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            +LAD+ LV GA+ ES  R + P Y++K+V+HEAGHFL+AYLLGCP+QG  L  ++       G Q GT+F D   +  M   K+TR++IDR+SIV+M GIAAEA+ Y  +E
Sbjct:   35 FLADRILVSGAVLESIYRFLFPQYKQKVVQHEAGHFLIAYLLGCPIQGFFLSAWDASSAGLQG-QAGTIFFDNDLSSQMGNNKVTRTSIDRYSIVVMAGIAAEAVVYDQAE 144          
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Match: A0A7S0XWC1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XWC1_HEMAN)

HSP 1 Score: 116 bits (290), Expect = 3.700e-28
Identity = 56/111 (50.45%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    7 WLADKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQGCLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMGGIAAEAIEYGTSE 339
            +LAD+ LV GA+ ES  R++ P Y+ K+V+HEAGHFL+AYLLGCP+QG  L  ++       G Q GT+F D   +  M   K+TR++IDR+SIV+M GIAAEA+ Y  +E
Sbjct:  152 FLADRVLVSGAVLESIYRLLFPKYKSKVVQHEAGHFLIAYLLGCPIQGFFLSAWDASSAGLQG-QAGTIFFDNDLSSQMGNNKVTRTSIDRYSIVVMAGIAAEAVVYDQAE 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24912.6771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHD1_ECTSI7.310e-4469.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLP7_9STRA1.200e-3860.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WUW6_9STRA7.990e-3150.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3FEW8_9EUKA1.260e-2950.93Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0LZG5_9CRYP3.270e-2950.45Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0BK55_9RHOD6.570e-2952.94Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZIP3_9RHOD6.820e-2949.56Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S1EHK9_HEMAN7.450e-2950.45Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0VT99_9CRYP8.490e-2950.45Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0XWC1_HEMAN3.700e-2850.45Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24912contigH-paniculata_contig24912:1887..3336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue1.9e-37
Seed eggNOG ortholog2880.D7FHD1
Hectar predicted targeting categoryother localisation
EggNOG OGs28IYK@1,2QRAA@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_003930.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.8103392-CDS-H-paniculata_contig24912:1886..20571622929729.8103392-CDS-H-paniculata_contig24912:1886..2057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24912 1887..2057 +
1691480986.0953107-CDS-H-paniculata_contig24912:1886..20571691480986.0953107-CDS-H-paniculata_contig24912:1886..2057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24912 1887..2057 +
1622929729.8219366-CDS-H-paniculata_contig24912:3168..33361622929729.8219366-CDS-H-paniculata_contig24912:3168..3336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24912 3169..3336 +
1691480986.109142-CDS-H-paniculata_contig24912:3168..33361691480986.109142-CDS-H-paniculata_contig24912:3168..3336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24912 3169..3336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24912.6771.1prot_H-paniculata_contig24912.6771.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24912 1887..3336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24912.6771.1

>prot_H-paniculata_contig24912.6771.1 ID=prot_H-paniculata_contig24912.6771.1|Name=mRNA_H-paniculata_contig24912.6771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
GVWLADKALVGGALAESAIRIVVPGYREKIVRHEAGHFLLAYLLGCPVQG
CLLDPFEIGKYATSGAQGGTVFADPSFARGMDTGKLTRSAIDRFSIVLMG
GIAAEAIEYGTSE
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mRNA from alignment at H-paniculata_contig24912:1887..3336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24912.6771.1 ID=mRNA_H-paniculata_contig24912.6771.1|Name=mRNA_H-paniculata_contig24912.6771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1450bp|location=Sequence derived from alignment at H-paniculata_contig24912:1887..3336+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTATGGCTAGCGGACAAAGCGTTGGTTGGAGGGGCGCTAGCAGAATC GGCAATTCGCATCGTGGTGCCCGGGTATCGCGAAAAGATCGTACGGCATG AAGCGGGACATTTTTTACTGGCCTACCTGCTTGGGTGCCCCGTACAAGGC TGTCTTCTGGACCCTTTCGAGGTGCGCTAAGTTGTAAGGTGCTACCGTTC GTGACAGGGCCGTCAGAAACGTTGAATGTATTTGGTGTCCGTGTTATGCG ATAATGGAACGCTGGGACGAAGGGTGGAGATTTCATTTTCTACGAAAACA GGACGGAACCTCAACACCTGTGCCATCGATCTTTATTCGATCTTGATTCT GGAAAGTCGACAAGCCTGAGGAGGCGCGAAATACGTTCAGTTGTTTGTCT CACTCTCAATTCGAATTTTTTTAAAACGTCCGCGACGACCTTCTCCAACC GTTTGCTTGGCGTTCATCGTCCATCATCCGAGGTGTGCGACAATCCGCAG CTCGGATGAAGTAAAATCATCTCCATGAAACCTTGAATCTTTACTCAGTC TTGATGGTAAAAAAAAGAAAAAAAAAGAAGGTGGAGGGGTCCATAGGTCA TACTCAGGAGTCGAACCCTCCATGAAGGGATGGAAGGCTTACAGCTATCT CTATCTCTATCGAGTTGAAGAGGTGTTGGAAAGCATGAAGTATTTGTCCT GTTGTCGTACTTGGAAAAAAAATTGAAATGACTTTCGTAGACCCTCATCG GAGATGTGTAAAATCAACCATAGTTAATCACGGATGAAACCACTATAATA ATGCTTTGCGTGCGTGTGTTTTATCTTTTGTGCTTTTCGTCTTTATTTTA TTTTATTTTTATTTTTATTTTTCTCGTGCTTCAATCGTTTTCGGTGCTAC TTTAGTTAGCGGTATATTCCTACATTTCCCGCGGATCGTTATTTACCCTG CGCCCTACGACCACGGGTTTGAGGGTTAGACAGTAGTTGTTGTTTTGCCC CATTCCTTGGACACAGCTTCAAACCGCTGCGTTGCTGCCCCCGGCGGTAG TTCAGTAATGGTGCGGTACAGATTGATGCCTATCGTAGCGCCGCTGCAAT TATATTGCCGTCAGGAAGTAGCACAGTACGTTTCGAGTATTATTGATCTA GCCAAGGGTATGTACATGTTGTTTCGATTTGATGCTGTTTTGATTCGGTC ATATTTCGGTATGATGTATATGACCATTTTTATATTTGTTCACCTTTGGA TTGGATGATGGTTCGATTGGATGATGACAAAGATCGGAAAGTATGCAACA TCTGGGGCGCAAGGAGGCACCGTCTTTGCGGATCCGTCCTTCGCGAGGGG CATGGATACTGGCAAGCTCACCAGGTCAGCCATCGACCGGTTCAGCATCG TGCTCATGGGGGGCATAGCAGCGGAAGCAATAGAGTACGGTACATCAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24912:1887..3336+

>mRNA_H-paniculata_contig24912.6771.1 ID=mRNA_H-paniculata_contig24912.6771.1|Name=mRNA_H-paniculata_contig24912.6771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig24912:1887..3336+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTATGGCTAGCGGACAAAGCGTTGGTTGGAGGGGCGCTAGCAGAATC
GGCAATTCGCATCGTGGTGCCCGGGTATCGCGAAAAGATCGTACGGCATG
AAGCGGGACATTTTTTACTGGCCTACCTGCTTGGGTGCCCCGTACAAGGC
TGTCTTCTGGACCCTTTCGAGGGCGTATGGCTAGCGGACAAAGCGTTGGT
TGGAGGGGCGCTAGCAGAATCGGCAATTCGCATCGTGGTGCCCGGGTATC
GCGAAAAGATCGTACGGCATGAAGCGGGACATTTTTTACTGGCCTACCTG
CTTGGGTGCCCCGTACAAGGCTGTCTTCTGGACCCTTTCGAGATCGGAAA
GTATGCAACATCTGGGGCGCAAGGAGGCACCGTCTTTGCGGATCCGTCCT
TCGCGAGGGGCATGGATACTGGCAAGCTCACCAGGTCAGCCATCGACCGG
TTCAGCATCGTGCTCATGGGGGGCATAGCAGCGGAAGCAATAGAGTACGG
TACATCAGAGATCGGAAAGTATGCAACATCTGGGGCGCAAGGAGGCACCG
TCTTTGCGGATCCGTCCTTCGCGAGGGGCATGGATACTGGCAAGCTCACC
AGGTCAGCCATCGACCGGTTCAGCATCGTGCTCATGGGGGGCATAGCAGC
GGAAGCAATAGAGTACGGTACATCAGAG
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