mRNA_H-paniculata_contig2491.6768.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2491.6768.1
Unique NamemRNA_H-paniculata_contig2491.6768.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2491.6768.1 vs. uniprot
Match: A0A835YUT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT1_9STRA)

HSP 1 Score: 191 bits (486), Expect = 8.790e-58
Identity = 98/211 (46.45%), Postives = 131/211 (62.09%), Query Frame = 1 
Query:   13 EAIKYYRGKLRQAPDNPGFHHNIAPLLLAQGDRRSAIYHYRRAFHLNPGDINSKHDLAMVLWGIGKWEATLALLCQVVAVDDHHFQGHLNLAGVYYSKGQYDLAAHHARKATHIRPRDAMAHRSLGQVLDQMGNSQQSLFHRKIAIRRGPGIGRVSHP--QDALTYKKVGVQLLSRASPDKDNGYAFMDAYRALTRKHVELENSERTREIL 639
            E +KY+R KLRQAPDN  +H N+APLL+++G    AI+HYRRA  LNP D +SK+D+ + LW +GKWEA LA   QV          H+N++ VY+ +G    A  HAR+A H+ P DA AHR+L +VLD  G+S  ++ HR+IA+ RGPG      P   D   ++ + VQL      D +  +A MDA RAL  KHV L NSE T EI+
Sbjct:   21 EGLKYFRHKLRQAPDNASYHRNLAPLLVSEGQLTKAIHHYRRAIELNPADCSSKNDIGVCLWQLGKWEAALAAFVQVTRERPDFTAAHVNMSAVYFGRGMLVQALQHARQAVHLAPMDARAHRNLAKVLDATGDSTCAMAHRQIAVLRGPGSRVPPKPVAADIQVHRALAVQLHYHQQGDVEGAHACMDAARALEGKHVVLPNSETTWEIV 231
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BLAST of mRNA_H-paniculata_contig2491.6768.1 vs. uniprot
Match: A0A482RUE0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUE0_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 7.230e-14
Identity = 58/212 (27.36%), Postives = 100/212 (47.17%), Query Frame = 1 
Query:   16 AIKYYRGKLRQAPDNPGFHHNIAPLLLAQGDRRSAIYHYRRAFHLNPGDINSKHDLAMVL-WGIGKWEATLALLCQVVAVDDHHFQGHLNLAGVYYSKGQYDLAAHHARKATHIRPRDAMAHRSLGQVLDQMGNSQQSLFHRKIAIR-RGPGIGRVSHPQDALTYKKVGVQLLSRASPDKDNGYAFMDAYRALTRKHVELENSERTREILQK 645
            A +YY+GKL+  P    ++H +  +  A+G+   A ++YR+     P D+++++D A+ L    G+   ++  L + + + +     H N+A +    G    A HHA +A ++ P DAM                    H   +I    PG   V +      Y+   VQL++R    +D   A M A R L  KH+ L+ +ER++EI+QK
Sbjct:    7 AAEYYKGKLQNHPTLSRYNHFMGAISSAKGEVDKADHYYRQTMLNAPTDVSARNDFALHLAHSEGRKHDSIKELKKGLLITNESSLLHKNMAAMQGRIGDLQQAMHHATQARYLAPNDAMNXXXXXXXXXXXXXXXXXXQHNFASIDIEDPGHCNVINTS---AYRNAAVQLVARGGSRRD-ALALMAAARTLEHKHITLDTTERSQEIVQK 214
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BLAST of mRNA_H-paniculata_contig2491.6768.1 vs. uniprot
Match: D7FJK4_ECTSI (TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK4_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 9.730e-8
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  490 DALTYKKVGVQLLSRASPDKDNGYAFMDAYRALTRKHVELENSERTREILQKC 648
            D  TYKK+G QL++    +++N +AF+D YRA+  K VEL  SERT E L KC
Sbjct:  166 DTHTYKKIGAQLVTLGQAERENSHAFVDCYRAMAGKQVELATSERTNECLCKC 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2491.6768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YUT1_9STRA8.790e-5846.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482RUE0_9ARCH7.230e-1427.36Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D7FJK4_ECTSI9.730e-850.94TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2491contigH-paniculata_contig2491:6292..7596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_006440.1
Exons2
Model size657
Cds size657
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.4416642-CDS-H-paniculata_contig2491:6291..63391622929729.4416642-CDS-H-paniculata_contig2491:6291..6339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2491 6292..6339 +
1691480985.8721812-CDS-H-paniculata_contig2491:6291..63391691480985.8721812-CDS-H-paniculata_contig2491:6291..6339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2491 6292..6339 +
1622929729.4546185-CDS-H-paniculata_contig2491:6987..75961622929729.4546185-CDS-H-paniculata_contig2491:6987..7596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2491 6988..7596 +
1691480985.8842235-CDS-H-paniculata_contig2491:6987..75961691480985.8842235-CDS-H-paniculata_contig2491:6987..7596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2491 6988..7596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2491.6768.1prot_H-paniculata_contig2491.6768.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2491 6292..7596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2491.6768.1

>prot_H-paniculata_contig2491.6768.1 ID=prot_H-paniculata_contig2491.6768.1|Name=mRNA_H-paniculata_contig2491.6768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MRNGEAIKYYRGKLRQAPDNPGFHHNIAPLLLAQGDRRSAIYHYRRAFHL
NPGDINSKHDLAMVLWGIGKWEATLALLCQVVAVDDHHFQGHLNLAGVYY
SKGQYDLAAHHARKATHIRPRDAMAHRSLGQVLDQMGNSQQSLFHRKIAI
RRGPGIGRVSHPQDALTYKKVGVQLLSRASPDKDNGYAFMDAYRALTRKH
VELENSERTREILQKCLR*
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mRNA from alignment at H-paniculata_contig2491:6292..7596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2491.6768.1 ID=mRNA_H-paniculata_contig2491.6768.1|Name=mRNA_H-paniculata_contig2491.6768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-paniculata_contig2491:6292..7596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAATGGCGAAGCGATCAAGTACTATCGAGGCAAGCTGCGGCAGGT
ACAGTTACAAGGCTCTTGTGGAATGCGAAGACATTACATGAAAATTTATT
TGATTGAGCATGTCTCGTATAATAGAAAAATGGAGCTCTTTCATAGTTCT
GTTAATAGTTGGCAGTCACGGCCCCTATCGCGTGATCATTGTAATAGCCC
TCTTTTGCAACCCAAACAAACCCACACAACTAACGCTCATTTATGCGAGC
GGGTGGTCTGGGAACTTCGTGCGAACGAGCATCCAGTCGAACGATGAAAC
AACAGTGAAAGACAGACATCCACGAAGACTAGAGCCTTGAGGTGCTGAAA
GCATGTAAAAAGATTGTTTTTGTGGAGACTCGTGTAGTTTCGGCAAATGT
ACTTCACTGTAATATATGTATATATATATATATATATACTTGTACAGTAG
ACGGCGCCAAACATGGCCATGCATGTCTAACCTGTGAATCTCTTCTTTTG
TGCGCAAGTAAGCATGTCACGGAATCGATGGTAAAATACCTCTTAATTAC
TGTTGGCATATACTTTATGAGCAACTTCCAGATGCACAAAGTGGAAGGTG
CATCTCACCAGCTCGACTACCGAAGCCATGCATGTTGTGGGAAACTCGCG
AACTCAAAACAAAATACTCCACATCCTTGCGCATCCATACAATCAGGCCC
CCGACAACCCAGGCTTCCATCATAACATAGCGCCCCTTCTCCTCGCGCAA
GGAGACCGGCGGTCCGCAATATACCACTATCGGAGAGCCTTTCACCTCAA
TCCGGGCGATATCAACTCCAAGCACGACTTGGCGATGGTACTTTGGGGAA
TTGGAAAATGGGAAGCAACGCTAGCTCTCCTGTGTCAGGTCGTGGCAGTT
GACGACCATCACTTCCAGGGTCACCTCAATCTTGCGGGTGTCTACTATTC
CAAGGGCCAATACGACTTGGCCGCGCATCACGCCAGGAAAGCAACACACA
TCAGGCCGAGAGATGCCATGGCGCACCGTTCGCTCGGGCAAGTTTTGGAT
CAAATGGGAAACTCTCAACAGTCCTTGTTTCACCGCAAAATTGCAATCCG
CAGAGGGCCAGGCATTGGTAGAGTGTCTCACCCCCAAGATGCTTTGACGT
ACAAGAAGGTTGGTGTGCAGCTTTTGAGCCGCGCGAGTCCCGACAAGGAC
AACGGCTACGCGTTCATGGATGCTTACCGGGCGCTCACTAGGAAACACGT
GGAGCTGGAAAATTCCGAGCGCACACGGGAGATATTACAAAAGTGCTTAC
GTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2491:6292..7596+

>mRNA_H-paniculata_contig2491.6768.1 ID=mRNA_H-paniculata_contig2491.6768.1|Name=mRNA_H-paniculata_contig2491.6768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig2491:6292..7596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAATGGCGAAGCGATCAAGTACTATCGAGGCAAGCTGCGGCAGAT
GAGAAATGGCGAAGCGATCAAGTACTATCGAGGCAAGCTGCGGCAGGCCC
CCGACAACCCAGGCTTCCATCATAACATAGCGCCCCTTCTCCTCGCGCAA
GGAGACCGGCGGTCCGCAATATACCACTATCGGAGAGCCTTTCACCTCAA
TCCGGGCGATATCAACTCCAAGCACGACTTGGCGATGGTACTTTGGGGAA
TTGGAAAATGGGAAGCAACGCTAGCTCTCCTGTGTCAGGTCGTGGCAGTT
GACGACCATCACTTCCAGGGTCACCTCAATCTTGCGGGTGTCTACTATTC
CAAGGGCCAATACGACTTGGCCGCGCATCACGCCAGGAAAGCAACACACA
TCAGGCCGAGAGATGCCATGGCGCACCGTTCGCTCGGGCAAGTTTTGGAT
CAAATGGGAAACTCTCAACAGTCCTTGTTTCACCGCAAAATTGCAATCCG
CAGAGGGCCAGGCATTGGTAGAGTGTCTCACCCCCAAGATGCTTTGACGT
ACAAGAAGGTTGGTGTGCAGCTTTTGAGCCGCGCGAGTCCCGACAAGGAC
AACGGCTACGCGTTCATGGATGCTTACCGGGCGCTCACTAGGAAACACGT
GGAGCTGGAAAATTCCGAGCGCACACGGGAGATATTACAAAAGTGCTTAC
GTTGAGCCCCCGACAACCCAGGCTTCCATCATAACATAGCGCCCCTTCTC
CTCGCGCAAGGAGACCGGCGGTCCGCAATATACCACTATCGGAGAGCCTT
TCACCTCAATCCGGGCGATATCAACTCCAAGCACGACTTGGCGATGGTAC
TTTGGGGAATTGGAAAATGGGAAGCAACGCTAGCTCTCCTGTGTCAGGTC
GTGGCAGTTGACGACCATCACTTCCAGGGTCACCTCAATCTTGCGGGTGT
CTACTATTCCAAGGGCCAATACGACTTGGCCGCGCATCACGCCAGGAAAG
CAACACACATCAGGCCGAGAGATGCCATGGCGCACCGTTCGCTCGGGCAA
GTTTTGGATCAAATGGGAAACTCTCAACAGTCCTTGTTTCACCGCAAAAT
TGCAATCCGCAGAGGGCCAGGCATTGGTAGAGTGTCTCACCCCCAAGATG
CTTTGACGTACAAGAAGGTTGGTGTGCAGCTTTTGAGCCGCGCGAGTCCC
GACAAGGACAACGGCTACGCGTTCATGGATGCTTACCGGGCGCTCACTAG
GAAACACGTGGAGCTGGAAAATTCCGAGCGCACACGGGAGATATTACAAA
AGTGCTTACGTTGA
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