prot_H-paniculata_contig2491.6767.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2491.6767.1
Unique Nameprot_H-paniculata_contig2491.6767.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length440
Homology
BLAST of mRNA_H-paniculata_contig2491.6767.1 vs. uniprot
Match: D7FJK5_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK5_ECTSI)

HSP 1 Score: 347 bits (889), Expect = 9.250e-113
Identity = 203/403 (50.37%), Postives = 252/403 (62.53%), Query Frame = 0
Query:   19 GMSVEFTPALDLILKHHGNDVVKLASTLETLTVIATKLRDEPKGSKYRSIRLLNKTFWDRVGSVSGGISFMTALGFDLVQQGADQGPSFQVRAGAPNDTDIALALEVLSAAAAPKVPQPLTDEQKDKIGTDNVAPASEVSGGFNPFATAFSRRSRTHLQQRAEEGLANWEKRHASLQQRFWAIEDRHVTVLLPQTIQSRLTNGPDDDGIPNPTISEGSESELD-ERDELEIVMRLWRERHTKDEPERFETKAAKKLRVLRTTKTYPYVLVRVRLPKGLYLQARFNPGESLMTVYEVIRASLEAEARNESATSGFCHNFELFLAGPTRVLERDNT-SLREANILAPACVVHLRWDDEHAGVECWGPKLEDAMRIASGDA-RYPRVPYSSRYDVAEPIPSRRVFE 418
            G++     A D I+ HH  D+  L  TL++LT IA  L +EP+  KYR IRLLNK  W+RVGSV GGISFM+ALGFDL   G   GP FQ R GAP +TD+  AL++LSA              + + G          + GFNPF TAFSR+SRT LQ+RAE+GLA+     A  QQRF  +E+R VT+LLPQ          + +        +G + E D E+ ELE+V +LWRER   DE ERFET+AAKKLR+LRT K+YPYVL R+RLP G+YLQARFN  ESL T+Y+V    L  EA  +      CHNFELF+A PTRVL RD+T SL ++NILAPACV+HLRW    AG++ W    E+ +  A+ D    PRVPYSSR DV E I SRR  E
Sbjct:   18 GLASNLQGAFDQIVSHHAKDLRALNRTLDSLTNIAENLFNEPENPKYRKIRLLNKVVWERVGSVDGGISFMSALGFDL-NPGTGDGPCFQARTGAPVETDVRQALDLLSARLL----------HQSESGRPAAEAEPREASGFNPFTTAFSRKSRTRLQERAEQGLAHLSYSQAKRQQRFSTLEERLVTILLPQQPHEASAEMEEQE-------QDGEQGEADAEQRELELVAQLWRERMGNDEVERFETRAAKKLRLLRTAKSYPYVLCRIRLPGGVYLQARFNSKESLETIYQVFGQVLSMEAEVDGQ---LCHNFELFMAPPTRVLPRDSTQSLEDSNILAPACVLHLRWKSGEAGLQTWAQNFEERLSRATMDGLALPRVPYSSRLDVPEAISSRRPQE 399          
BLAST of mRNA_H-paniculata_contig2491.6767.1 vs. uniprot
Match: A0A835YNR5_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR5_9STRA)

HSP 1 Score: 132 bits (332), Expect = 7.270e-31
Identity = 124/404 (30.69%), Postives = 183/404 (45.30%), Query Frame = 0
Query:   38 DVVKLASTLETLT-VIATKLRDEPKGSKYRSIRLLNKTFWDRVGSVSGGISFMTALGFDLVQQGADQGPSFQVRAGAPNDT-DIALAL--EVLSAAAAPKVPQPLTDEQKDKIGTDNVAPASEVSG--GFNPFATAFSRRSRTHLQQRAEEGLANWEKRHASLQQRFWAIEDRHVTVLLPQTIQSRLTNGPDDDGIPNPTISEG---SESELDERDELEI---------------VMRLWRERHTKDEPERFETKAAKKLRVLRTTKTYPYVLVRVRLPKGLYLQARFNPGESLMT-VYEVIRASLEAEARNESATSGFCHNFELFLAGPTRVLERDNTSLREANILAPACVVHLRWDDEHAGVECWGPK-LEDAMRIASGD----ARYPRVPYSSRYDVAEPI 411
            D      TL+ L  V+   L+ + + S  +SIRL+N  FW+ VGSV GGI  M ALGF+L  +G  +GP+F +R  A     ++A AL  E L+A     V                +   +  S    FNP+A+AFSR+++T +Q            +  +   RF  +EDR++TVL P T +   T         N ++S     + S  D   E +                V++  R    + + + F + AA++L  LR  +   Y LV VR P G+ LQAR+N  E  +  V +V+R SL  E R+          F L   GPTR L  D   L+EA ++A A VVHL+W+   AG E      + + M +   +    AR        +YDV  PI
Sbjct:    3 DTASAIKTLQLLQRVVEGALQQQNQESAAKSIRLMNSAFWESVGSVPGGIGLMMALGFELEDRGDGRGPAFVLRGDADRSLLELAQALLQEELAALGKGSVSSSXXXXXXXXXXXXXIGAIAGASAQSDFNPYASAFSRKAKTRVQDXXXXXXXXXXXQRRAHLLRFDKMEDRNITVLQPLTGKP-ATGAAATSADANASLSSSEADAASSGDHSSEYDXXXXXXXXLSAATASAVLQAIRSSRARQQTQPFASAAARRLHALRAARLRAYALVNVRFPDGVQLQARYNAQEDTVGHVVDVVRHSLRREVRHLP--------FRLSALGPTRALLPDQL-LQEAGMVAAANVVHLKWE---AGEEAKSSAAMAETMSVLRAELVQGARCLAAARREQYDVPPPI 393          
BLAST of mRNA_H-paniculata_contig2491.6767.1 vs. uniprot
Match: A0A8J5XSP1_DIALT (PHD-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSP1_DIALT)

HSP 1 Score: 57.0 bits (136), Expect = 3.350e-5
Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 0
Query:   36 GNDVVKLASTLETLTVIATKLRDEPKGSKYRSIRLLNKTFWDRVGSVSGGISFMTALGFDLVQQGADQGPSFQVRAGAPNDTDIALALEVLSAA 129
            G D  + A  L+T+  +   + ++P+  +YR++RL N TF  RVGS+  G++ M A GF+  +   D         GAP+     LA+ V  AA
Sbjct:   36 GADAARCALALQTIATMLRNVLEDPQAERYRTVRLANATFHQRVGSLPSGLALMRAFGFEDARAAGD---------GAPDGAVTHLAMPVADAA 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2491.6767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJK5_ECTSI9.250e-11350.37UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YNR5_9STRA7.270e-3130.69UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A8J5XSP1_DIALT3.350e-532.98PHD-type domain-containing protein n=1 Tax=Diacron... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 177..197
NoneNo IPR availableGENE3D1.20.58.2190coord: 28..117
e-value: 5.4E-12
score: 47.2
NoneNo IPR availableGENE3D3.10.20.90coord: 233..367
e-value: 3.0E-9
score: 39.1
NoneNo IPR availablePANTHERPTHR23153UBX-RELATEDcoord: 41..373
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..439
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
IPR018997PUB domainSMARTSM00580PGNneucoord: 44..110
e-value: 0.0033
score: 26.7
IPR018997PUB domainPFAMPF09409PUBcoord: 41..103
e-value: 6.9E-13
score: 48.4
IPR001012UBX domainSMARTSM00166ubx_3coord: 277..369
e-value: 0.0033
score: 21.7
IPR001012UBX domainPFAMPF00789UBXcoord: 281..365
e-value: 5.7E-8
score: 32.8
IPR001012UBX domainPROSITEPS50033UBXcoord: 280..366
score: 11.982
IPR036339PUB-like domain superfamilySUPERFAMILY143503PUG domain-likecoord: 32..124
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 257..366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2491contigH-paniculata_contig2491:2340..5994 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2491.6767.1mRNA_H-paniculata_contig2491.6767.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2491 1929..6052 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2491.6767.1 ID=prot_H-paniculata_contig2491.6767.1|Name=mRNA_H-paniculata_contig2491.6767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=440bp
MKFSYASIVAAGLLRFSNGMSVEFTPALDLILKHHGNDVVKLASTLETLT
VIATKLRDEPKGSKYRSIRLLNKTFWDRVGSVSGGISFMTALGFDLVQQG
ADQGPSFQVRAGAPNDTDIALALEVLSAAAAPKVPQPLTDEQKDKIGTDN
VAPASEVSGGFNPFATAFSRRSRTHLQQRAEEGLANWEKRHASLQQRFWA
IEDRHVTVLLPQTIQSRLTNGPDDDGIPNPTISEGSESELDERDELEIVM
RLWRERHTKDEPERFETKAAKKLRVLRTTKTYPYVLVRVRLPKGLYLQAR
FNPGESLMTVYEVIRASLEAEARNESATSGFCHNFELFLAGPTRVLERDN
TSLREANILAPACVVHLRWDDEHAGVECWGPKLEDAMRIASGDARYPRVP
YSSRYDVAEPIPSRRVFEAAAGASVPTEAPPESSKSSHQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018997PUB_domain
IPR001012UBX_dom
IPR036339PUB-like_dom_sf
IPR029071Ubiquitin-like_domsf