|
|
Homology
BLAST of mRNA_H-paniculata_contig2491.6767.1 vs. uniprot
Match: D7FJK5_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK5_ECTSI) HSP 1 Score: 347 bits (889), Expect = 1.320e-110 Identity = 203/403 (50.37%), Postives = 252/403 (62.53%), Query Frame = 2
Query: 113 GMSVEFTPALDLILKHHGNDVVKLASTLETLTVIATKLRDEPKGSKYRSIRLLNKTFWDRVGSVSGGISFMTALGFDLVQQGADQGPSFQVRAGAPNDTDIALALEVLSAAAAPKVPQPLTDEQKDKIGTDNVAPASEVSGGFNPFATAFSRRSRTHLQQRAEEGLANWEKRHASLQQRFWAIEDRHVTVLLPQTIQSRLTNGPDDDGIPNPTISEGSESELD-ERDELEIVMRLWRERHTKDEPERFETKAAKKLRVLRTTKTYPYVLVRVRLPKGLYLQARFNPGESLMTVYEVIRASLEAEARNESATSGFCHNFELFLAGPTRVLERDNT-SLREANILAPACVVHLRWDDEHAGVECWGPKLEDAMRIASGDA-RYPRVPYSSRYDVAEPIPSRRVFE 1312
G++ A D I+ HH D+ L TL++LT IA L +EP+ KYR IRLLNK W+RVGSV GGISFM+ALGFDL G GP FQ R GAP +TD+ AL++LSA + + G + GFNPF TAFSR+SRT LQ+RAE+GLA+ A QQRF +E+R VT+LLPQ + + +G + E D E+ ELE+V +LWRER DE ERFET+AAKKLR+LRT K+YPYVL R+RLP G+YLQARFN ESL T+Y+V L EA + CHNFELF+A PTRVL RD+T SL ++NILAPACV+HLRW AG++ W E+ + A+ D PRVPYSSR DV E I SRR E
Sbjct: 18 GLASNLQGAFDQIVSHHAKDLRALNRTLDSLTNIAENLFNEPENPKYRKIRLLNKVVWERVGSVDGGISFMSALGFDL-NPGTGDGPCFQARTGAPVETDVRQALDLLSARLL----------HQSESGRPAAEAEPREASGFNPFTTAFSRKSRTRLQERAEQGLAHLSYSQAKRQQRFSTLEERLVTILLPQQPHEASAEMEEQE-------QDGEQGEADAEQRELELVAQLWRERMGNDEVERFETRAAKKLRLLRTAKSYPYVLCRIRLPGGVYLQARFNSKESLETIYQVFGQVLSMEAEVDGQ---LCHNFELFMAPPTRVLPRDSTQSLEDSNILAPACVLHLRWKSGEAGLQTWAQNFEERLSRATMDGLALPRVPYSSRLDVPEAISSRRPQE 399
BLAST of mRNA_H-paniculata_contig2491.6767.1 vs. uniprot
Match: A0A8J5XSP1_DIALT (PHD-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSP1_DIALT) HSP 1 Score: 57.0 bits (136), Expect = 5.510e-5 Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 2
Query: 164 GNDVVKLASTLETLTVIATKLRDEPKGSKYRSIRLLNKTFWDRVGSVSGGISFMTALGFDLVQQGADQGPSFQVRAGAPNDTDIALALEVLSAA 445
G D + A L+T+ + + ++P+ +YR++RL N TF RVGS+ G++ M A GF+ + D GAP+ LA+ V AA
Sbjct: 36 GADAARCALALQTIATMLRNVLEDPQAERYRTVRLANATFHQRVGSLPSGLALMRAFGFEDARAAGD---------GAPDGAVTHLAMPVADAA 120
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 80.1 |
| Seed ortholog evalue | 2.8e-12 |
| Seed eggNOG ortholog | 4792.ETI49465 |
| Preferred name | ASPSCR1 |
| KEGG ko | ko:K15627 |
| KEGG Pathway | ko05202,map05202 |
| Hectar predicted targeting category | signal peptide |
| GOs | GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009898,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010827,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019941,GO:0022411,GO:0030154,GO:0030163,GO:0030433,GO:0030435,GO:0030659,GO:0031090,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033036,GO:0033500,GO:0033554,GO:0034613,GO:0034762,GO:0034976,GO:0035265,GO:0036503,GO:0040007,GO:0042221,GO:0042592,GO:0042593,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0043933,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0046324,GO:0046907,GO:0048471,GO:0048518,GO:0048522,GO:0048589,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562,GO:1901564,GO:1901565,GO:1901575,GO:1901698 |
| EggNOG free text desc. | TUG ubiquitin-like domain |
| EggNOG OGs | 3QBTX@4776,KOG2699@1,KOG2699@2759 |
| Ec32 ortholog description | UBX domain |
| Ec32 ortholog | Ec-04_006450.1 |
| COG Functional cat. | O |
| Best tax level | Peronosporales |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001 |
| Exons | 5 |
| Model size | 1789 |
| Cds size | 1320 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2491.6767.1 >prot_H-paniculata_contig2491.6767.1 ID=prot_H-paniculata_contig2491.6767.1|Name=mRNA_H-paniculata_contig2491.6767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=440bp
MKFSYASIVAAGLLRFSNGMSVEFTPALDLILKHHGNDVVKLASTLETLT VIATKLRDEPKGSKYRSIRLLNKTFWDRVGSVSGGISFMTALGFDLVQQG ADQGPSFQVRAGAPNDTDIALALEVLSAAAAPKVPQPLTDEQKDKIGTDN VAPASEVSGGFNPFATAFSRRSRTHLQQRAEEGLANWEKRHASLQQRFWA IEDRHVTVLLPQTIQSRLTNGPDDDGIPNPTISEGSESELDERDELEIVM RLWRERHTKDEPERFETKAAKKLRVLRTTKTYPYVLVRVRLPKGLYLQAR FNPGESLMTVYEVIRASLEAEARNESATSGFCHNFELFLAGPTRVLERDN TSLREANILAPACVVHLRWDDEHAGVECWGPKLEDAMRIASGDARYPRVP YSSRYDVAEPIPSRRVFEAAAGASVPTEAPPESSKSSHQ* back to topmRNA from alignment at H-paniculata_contig2491:1929..6052- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2491.6767.1 ID=mRNA_H-paniculata_contig2491.6767.1|Name=mRNA_H-paniculata_contig2491.6767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4124bp|location=Sequence derived from alignment at H-paniculata_contig2491:1929..6052- (Halopteris paniculata Hal_grac_a_UBK monoicous) TGTACGGTCCCGCAACGGTGCCCTCGTTGAGGTCAAGTGCAGGGAGTGTG
TAACGACAATGAAATTCTCGTACGCATCAATTGTAGCTGCAGGACTTCTT
CGATTCAGTAATGGAATGAGTGTAGAGTTCACTCCCGCTTTAGACCTGAT
TCTGAAGCATCATGGCAATGATGTGGTCAAACTTGCGAGCACATTGGAGA
CACTTACTGTTATTGCAACCAAGCTCAGGGATGAACCCAAGGGTAGCAAG
TACCGGAGCATTCGACTTTTGAACAAGACGTTCTGGGATCGAGTCGGTAG
CGTCAGCGGCGGCATATCCTTCATGACGGCCTTGGGGTTTGATCTTGTTC
AACAAGGTGCATGGCTTTGGAGTATTATTGAACATGTACTACTGTAAGCC
TGTATTGTCTGTGCTGAACCTCTCAGTTGTGCAGTAAGAACTTGGTGGTT
AGACAATTGTGTGCAAGGCGAACCGTTACATTTAATTTACTTATAAGTTG
AACCAATAACCTTCGAGTCATACATATGCTCACTTCTAGACGATTTCGGG
CTTTCCTTGGGCTACGGTAGGTGCAGACCAAGGGCCATCTTTTCAGGTGC
GAGCGGGCGCCCCAAATGACACTGATATCGCTTTGGCGCTTGAAGTGCTG
TCGGCGGCAGCAGCACCCAAGGTTCCCCAACCACTTACAGATGAGCAAAA
GGACAAGATTGGCACTGACAACGTGGCGCCAGCTTCGGAAGTCAGTGGAG
GTGAGCACTAAAATTGCCTCTAAAACCCTAACAGACATTTGCTCTCGACC
ACTATACATGCGACATACGGCATCAGAGCAGAAGAGTATGAATGAGCGCT
GAAGGGATCAAATGTATCCTATACCTGCGGCAGGCTGACTTCATTGATGA
AGAAGTGTATTATTTTGAATTGTACCAGTAGTGCATGCACAAACGATTAG
TTACGTGTCTTCGTTCATGAGGCTCTTTTCTCGAATGTACCTTTACAGAC
AGATGCCTACTCTACAGATAGGTGCTAGTAGGGCTTCAAGAGTACGGCAG
TTGTGGATTAAGGGCCGTTTGGCGAACTTTACGTGACCACAAAACGTGGA
GCATGTGTAACGAGCAAGATGAAGCTGGAAGCAAAAACAGATACCACAGC
CAGTACTGACACGCTTTGGTGCGAGTACAGATCTTTTGCCCTAACAGCTC
CGCGCGCTGAGCAGGCACAACGAAGGGAAGGGGTGATCGAAAAAGCTGTT
AATGTCCAGATTAGATCGCGACTACGTCGTTGGGTGTAGCGCTCGCAATG
TCGGAGGCCGTTGTCCCACTAAGTAACACGCCTAAACCCGCAACTCCTCC
CCCATTAAATTCAAGTATCTAACAAACGGTCAGTCTTGGGATCCGATCTT
GAGGTCTTCGCGACGGCACGCACACAGTAGGCATGAAGAATATAAACAGC
GCAGTGTCGCAGCAGCACTGATGCCAGGCACATATGGAAAATTGGTTAAA
TGCGTTCCGTGATGTATGTTGTAAGAAATGGCGAGTGAAGTGTGCCACAG
AACGAAACGTGCTGCTTCGTATCCTCCGATAAAATATTTTCAAGTGAAAT
TTGGTTGGGGATTTCTGTCTTTGATCGCGGCTACGCCACGCGCTGTGGCA
CGGAAACGAGAGAATCCTGGTATAGAATACTCGCGTCAGGATTACATCGC
CACAGGCTTGGCAGTGCTTCGTTCAGTGTAGCACTCGAATTGCTGGAAAT
AGTGGGCAACACGCGAAATAAAGAGACGTGAGATTTTGGGTAAGATTGCT
GTTTGGGGTCCCCATCGGCAAATGTCGTAGACGTTTGATTTTTTCTCATG
ATCCTTTAGAAAGGTCAAGCCTCGCTCCGCTCCGTTTCACCTCTATCAGG
TAAATATTGAGAAACAAGGAGAAGAACCTCATACATACAACGACAGCGAC
TTCGCTTAAAACGACCCCAATAGGTGTCTGTGAATCCAACAATCGAGTGT
TCCATTAGTTCAACAGACCCTGCACATGTCCCAGTATCCCGCTTGGCTCT
GTGATTAATTGTATCGTGGACCCTCTCCAGGTTTCAACCCCTTCGCAACA
GCGTTTTCTCGAAGATCTCGTACGCATCTACAACAGCGAGCGGAAGAGGG
ATTGGCGAACTGGGAAAAGAGACATGCCAGCCTGCAGCAACGCTTCTGGG
CCATCGAGGATCGACACGTTACTGTTTTGCTCCCGCAGACGATACAATCG
AGACTGACAAATGGACCCGACGATGATGGCATACCAAACCCAACCATCAG
CGAGGGTAGCGAAAGCGAATTAGACGAGCGCGATGAACTTGAGATCGTCA
TGCGGTTGTGGAGAGAGCGACACACCAAAGATGAGCCCGAACGCTTCGAA
ACGAAAGCAGCCAAAAAGCTTCGCGTGCTACGCACGACCAAGACGTACCC
ATACGTACTCGTGCGCGTTCGACTGCCGAAGGGGTTGTACCTCCAAGCGC
GGTTCAACCCAGGCGAGAGTTTGATGGTGAGGACTATGCAACGTCTGGGG
TTTTGTTGACTTACGCAGCAAAAATTTGAAACAGGCCAGGTTTTCCCTAG
TACGGAATCCAAAATTTCGTTGCGCTATTTGGCAATTGCGATGCATGCGC
ATCCCCCATAACGTGTTAGAAGTTGTATGGAAGTTTTTCCCGTGTTTTCC
CACCATTTTTGCGGCCTGCTTAACTCAAAAAAATCTTTTTCGGTAATCAA
GATCGGATTCGAACTGACGACCTTCAGATCCTGTGGCTCTACCGGTGACG
CCTCTACGAACTCCAGTGGAAACTACCCCCTTCAATAGGTACTCCCCGCT
CGAGGATTTTATTTTATTTTATTTTTTTAGCTGCCCTTCTCTTGCTTCCC
TCCCCATATTTTCCGCAGGCATAGTAGTACGTGGTTATAAAGATTATGGA
AGCAGCGCTTACTTTGTCGCAATTGCATCATATCTGAGCGCTTTTTGTGT
AATTCCCACGCGGTACCCTCCACATCTGTTGCGTGCCGTGTTGCAGACTG
TATACGAGGTCATTAGGGCCAGTCTTGAAGCAGAAGCAAGGAATGAGAGT
GCCACCTCGGGGTTTTGCCACAATTTTGAGCTCTTTCTTGCCGGCCCCAC
GCGAGTACTTGAGCGAGATAACACCAGCTTGAGGGAGGCAAACATTCTTG
CCCCGGCATGCGTGGTGCACCTTCGTTGGGATGACGAGCATGCTGGGGTA
GAGTGCTGGGGACCGAAGTTGGAGGATGCCATGAGAATAGCGTCGGGCGA
CGCAAGATACCCAAGAGTTCCGTACTCATCGAGGTAAGCACAAAATTACT
CTCTATGATTGCGAATGAGGAGGGTTTGGGCACAGGATATGTTCACAATA
TATGAGTTCGCTGTCGTATGGGATAGTGGTCCACCGGTAGTGTTGTTTGT
GCAATTACAACAGTAGAGCACTACTGATCATTGCGCAGGAGACGTGTAGT
AGTACAAGTAGAGTAGACTATCGCTTGTCTCTCAATGTATGGAACTTCGT
TGTTTACAGGGTCGGAATTAACCCCCGTCCTCGCTCTTGCCCCACACATA
ACAGGTACGACGTTGCCGAACCTATACCTTCACGACGTGTTTTTGAGGCA
GCAGCAGGTGCTTCAGTGCCGACCGAGGCGCCACCCGAAAGCTCAAAAAG
TAGTCACCAATGACGGACGGCGTTCGCGTTAGTTTGACATCCGACGTTAC
ATACTGAGACACGATAGTGGCTCCATATACTTGATCGTCGGACAAGCAGT
CTCCATGAAGTCGGCGACACTGCCATGCATCACCTAGCTTGCAGTTGTGA
TGGCGGCTTTAGTACGGAGCTTCTGTATGCCCTTTAGCTGTTAATTTCGC
TGGATGTCGCGCAATTAAAAACACCTTGGATTTCTACAGCAAGGTTCAGC
ATCAACGAACAACACCAGGCGATGGCGTTTCACACTTGACAGGACCAATG
AATGTCGACGAGCGACATGAAGCAGGGATCCTAATCAATAACCAAAAGGG
GTTCTTCTTGATATACGTATTTTAGATCCTAACGAGGACTGTATCCCTGG
TATCGCGATAAGGACGTGGTGACC back to topCoding sequence (CDS) from alignment at H-paniculata_contig2491:1929..6052- >mRNA_H-paniculata_contig2491.6767.1 ID=mRNA_H-paniculata_contig2491.6767.1|Name=mRNA_H-paniculata_contig2491.6767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2640bp|location=Sequence derived from alignment at H-paniculata_contig2491:1929..6052- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAAATTCTCGTACGCATCAATTGTAGCTGCAGGACTTCTTCGATTCAG TAATGGAATGAGTGTAGAGTTCACTCCCGCTTTAGACCTGATTCTGAAGC ATCATGGCAATGATGTGGTCAAACTTGCGAGCACATTGGAGACACTTACT GTTATTGCAACCAAGCTCAGGGATGAACCCAAGGGTAGCAAGTACCGGAG CATTCGACTTTTGAACAAGACGTTCTGGGATCGAGTCGGTAGCGTCAGCG GCGGCATATCCTTCATGACGGCCTTGGGGTTTGATCTTGTTCAACAAGAT GAAATTCTCGTACGCATCAATTGTAGCTGCAGGACTTCTTCGATTCAGTA ATGGAATGAGTGTAGAGTTCACTCCCGCTTTAGACCTGATTCTGAAGCAT CATGGCAATGATGTGGTCAAACTTGCGAGCACATTGGAGACACTTACTGT TATTGCAACCAAGCTCAGGGATGAACCCAAGGGTAGCAAGTACCGGAGCA TTCGACTTTTGAACAAGACGTTCTGGGATCGAGTCGGTAGCGTCAGCGGC GGCATATCCTTCATGACGGCCTTGGGGTTTGATCTTGTTCAACAAGGTGC AGACCAAGGGCCATCTTTTCAGGTGCGAGCGGGCGCCCCAAATGACACTG ATATCGCTTTGGCGCTTGAAGTGCTGTCGGCGGCAGCAGCACCCAAGGTT CCCCAACCACTTACAGATGAGCAAAAGGACAAGATTGGCACTGACAACGT GGCGCCAGCTTCGGAAGTCAGTGGAGGTGCAGACCAAGGGCCATCTTTTC AGGTGCGAGCGGGCGCCCCAAATGACACTGATATCGCTTTGGCGCTTGAA GTGCTGTCGGCGGCAGCAGCACCCAAGGTTCCCCAACCACTTACAGATGA GCAAAAGGACAAGATTGGCACTGACAACGTGGCGCCAGCTTCGGAAGTCA GTGGAGGTTTCAACCCCTTCGCAACAGCGTTTTCTCGAAGATCTCGTACG CATCTACAACAGCGAGCGGAAGAGGGATTGGCGAACTGGGAAAAGAGACA TGCCAGCCTGCAGCAACGCTTCTGGGCCATCGAGGATCGACACGTTACTG TTTTGCTCCCGCAGACGATACAATCGAGACTGACAAATGGACCCGACGAT GATGGCATACCAAACCCAACCATCAGCGAGGGTAGCGAAAGCGAATTAGA CGAGCGCGATGAACTTGAGATCGTCATGCGGTTGTGGAGAGAGCGACACA CCAAAGATGAGCCCGAACGCTTCGAAACGAAAGCAGCCAAAAAGCTTCGC GTGCTACGCACGACCAAGACGTACCCATACGTACTCGTGCGCGTTCGACT GCCGAAGGGGTTGTACCTCCAAGCGCGGTTCAACCCAGGCGAGAGTTTGA TGGTTTCAACCCCTTCGCAACAGCGTTTTCTCGAAGATCTCGTACGCATC TACAACAGCGAGCGGAAGAGGGATTGGCGAACTGGGAAAAGAGACATGCC AGCCTGCAGCAACGCTTCTGGGCCATCGAGGATCGACACGTTACTGTTTT GCTCCCGCAGACGATACAATCGAGACTGACAAATGGACCCGACGATGATG GCATACCAAACCCAACCATCAGCGAGGGTAGCGAAAGCGAATTAGACGAG CGCGATGAACTTGAGATCGTCATGCGGTTGTGGAGAGAGCGACACACCAA AGATGAGCCCGAACGCTTCGAAACGAAAGCAGCCAAAAAGCTTCGCGTGC TACGCACGACCAAGACGTACCCATACGTACTCGTGCGCGTTCGACTGCCG AAGGGGTTGTACCTCCAAGCGCGGTTCAACCCAGGCGAGAGTTTGATGAC TGTATACGAGGTCATTAGGGCCAGTCTTGAAGCAGAAGCAAGGAATGAGA GTGCCACCTCGGGGTTTTGCCACAATTTTGAGCTCTTTCTTGCCGGCCCC ACGCGAGTACTTGAGCGAGATAACACCAGCTTGAGGGAGGCAAACATTCT TGCCCCGGCATGCGTGGTGCACCTTCGTTGGGATGACGAGCATGCTGGGG TAGAGTGCTGGGGACCGAAGTTGGAGGATGCCATGAGAATAGCGTCGGGC GACGCAAGATACCCAAGAGTTCCGTACTCATCGAGACTGTATACGAGGTC ATTAGGGCCAGTCTTGAAGCAGAAGCAAGGAATGAGAGTGCCACCTCGGG GTTTTGCCACAATTTTGAGCTCTTTCTTGCCGGCCCCACGCGAGTACTTG AGCGAGATAACACCAGCTTGAGGGAGGCAAACATTCTTGCCCCGGCATGC GTGGTGCACCTTCGTTGGGATGACGAGCATGCTGGGGTAGAGTGCTGGGG ACCGAAGTTGGAGGATGCCATGAGAATAGCGTCGGGCGACGCAAGATACC CAAGAGTTCCGTACTCATCGAGGTACGACGTTGCCGAACCTATACCTTCA CGACGTGTTTTTGAGGCAGCAGCAGGTGCTTCAGTGCCGACCGAGGCGCC ACCCGAAAGCTCAAAAAGTAGTCACCAATGAGTACGACGTTGCCGAACCT ATACCTTCACGACGTGTTTTTGAGGCAGCAGCAGGTGCTTCAGTGCCGAC CGAGGCGCCACCCGAAAGCTCAAAAAGTAGTCACCAATGA back to top
|