mRNA_H-paniculata_contig24902.6766.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24902.6766.1
Unique NamemRNA_H-paniculata_contig24902.6766.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24902.6766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24902contigH-paniculata_contig24902:791..1582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size232
Cds size231
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24902.6766.1prot_H-paniculata_contig24902.6766.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24902 791..1582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.2159173-CDS-H-paniculata_contig24902:790..9041622929729.2159173-CDS-H-paniculata_contig24902:790..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24902 791..904 -
1691480985.7247238-CDS-H-paniculata_contig24902:790..9041691480985.7247238-CDS-H-paniculata_contig24902:790..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24902 791..904 -
1622929729.2656386-CDS-H-paniculata_contig24902:1262..13291622929729.2656386-CDS-H-paniculata_contig24902:1262..1329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24902 1263..1329 -
1691480985.7402196-CDS-H-paniculata_contig24902:1262..13291691480985.7402196-CDS-H-paniculata_contig24902:1262..1329Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24902 1263..1329 -
1622929729.281144-CDS-H-paniculata_contig24902:1532..15821622929729.281144-CDS-H-paniculata_contig24902:1532..1582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24902 1533..1582 -
1691480985.7568603-CDS-H-paniculata_contig24902:1532..15821691480985.7568603-CDS-H-paniculata_contig24902:1532..1582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24902 1533..1582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24902.6766.1

>prot_H-paniculata_contig24902.6766.1 ID=prot_H-paniculata_contig24902.6766.1|Name=mRNA_H-paniculata_contig24902.6766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
TGYADGGRPRSFGARQRIIANDAQNSGAARGKWQDGERQENHEDIHRGCT
SRGVRHAATGTASAGHKGHVGVLEHRE
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mRNA from alignment at H-paniculata_contig24902:791..1582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24902.6766.1 ID=mRNA_H-paniculata_contig24902.6766.1|Name=mRNA_H-paniculata_contig24902.6766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=792bp|location=Sequence derived from alignment at H-paniculata_contig24902:791..1582- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGGTACGCTGACGGCGGCAGACCCAGGAGTTTCGGGGCAAGGCAAAG
GTGGGCCGTGATGAGGGTTGGGTGGTTAGGTAGTGCGTTGTGTACTTCCA
TGTTGCGTATGGGTGGTTACGAGTTGGGCGTGTCTTATTTTTCGTCCGTT
TCATGTGGTTCTATGATAGCATTGCCCAGCTGGAGTTTGCTTGGCATCTG
TATCGTGACAAAATATTAACGAAGACACCGTTAAACGAAAACCTCTGCAG
CAGGATCATCGCGAACGACGCGCAGAACAGTGGCGCCGCCCGCGGAAAAT
GGCAAGATGGCGAGCGCCAGGTACGAAACACTTGGTTTTGTACTTGCATT
GCCAGAGTGGGCAAAAGAGAGAATGTACGACTGATGGATATATATTGATG
ATGCCGTTTTGGTTTTGGGAAAGTTGTAGTATCTGTATTGGTGTTGATGT
GACATTTCGCGAAGGTGTGTGTGACTGGCTACTACTGTATGTACAAATAT
GTACATGGAAGTATGTGTGTAATAAACAAACTATAGATTGAACAAAGACA
CCACCTACATACGTCTATATTGATGTGTCATTACCGTCATTGATGTTCAA
ATATGTAACGTCTACTTGTCGCAGTTCTGCATGATGTACACAAGTCTAAC
AGTTCCGCGCGTGACGTCTGTTCGTTAGGAAAATCATGAAGATATTCACC
GTGGATGTACTTCAAGAGGGGTTCGACATGCAGCAACAGGTACTGCATCC
GCCGGGCACAAAGGTCATGTTGGCGTTCTTGAACATCGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24902:791..1582-

>mRNA_H-paniculata_contig24902.6766.1 ID=mRNA_H-paniculata_contig24902.6766.1|Name=mRNA_H-paniculata_contig24902.6766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig24902:791..1582- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGGTACGCTGACGGCGGCAGACCCAGGAGTTTCGGGGCAAGGCAAAG
ACAGGGTACGCTGACGGCGGCAGACCCAGGAGTTTCGGGGCAAGGCAAAG
GATCATCGCGAACGACGCGCAGAACAGTGGCGCCGCCCGCGGAAAATGGC
AAGATGGCGAGCGCCAGGATCATCGCGAACGACGCGCAGAACAGTGGCGC
CGCCCGCGGAAAATGGCAAGATGGCGAGCGCCAGGAAAATCATGAAGATA
TTCACCGTGGATGTACTTCAAGAGGGGTTCGACATGCAGCAACAGGTACT
GCATCCGCCGGGCACAAAGGTCATGTTGGCGTTCTTGAACATCGCGAGGA
AAATCATGAAGATATTCACCGTGGATGTACTTCAAGAGGGGTTCGACATG
CAGCAACAGGTACTGCATCCGCCGGGCACAAAGGTCATGTTGGCGTTCTT
GAACATCGCGAG
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