mRNA_H-paniculata_contig24900.6765.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24900.6765.1
Unique NamemRNA_H-paniculata_contig24900.6765.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24900.6765.1 vs. uniprot
Match: A0A4R6JL86_9ACTN (Heme peroxidase n=1 Tax=Actinoplanes brasiliensis TaxID=52695 RepID=A0A4R6JL86_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 1.330e-6
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1
Query:    7 GCSPALTNRRTKFAMNGRDYRRFPSGFAR-------ICDSRNDNNRILSQITVAWMNLHNKFVDD---EGFN----FAQARDATIKEWQAVVLTDLLPNILDEEV 279
            G + A+T   T   +NG D  R   G  +       I D RND N +L+Q  +A+++ HN+ VD    +G      F  AR+  ++ +Q VVLTD+LP ++   +
Sbjct:  145 GITAAITGAGTDVNLNGYDLPRVTHGETKAERQAPLIADPRNDQNLLLAQTHLAFLHFHNRVVDQLIHDGLRGPALFRAARETVVRHYQWVVLTDVLPRVVQPSI 249          
BLAST of mRNA_H-paniculata_contig24900.6765.1 vs. uniprot
Match: A0A4V6MTD2_9RHOB (Peroxidase n=1 Tax=Paracoccus subflavus TaxID=2528244 RepID=A0A4V6MTD2_9RHOB)

HSP 1 Score: 52.4 bits (124), Expect = 8.720e-6
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   94 ICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILDEEV 279
            I D RND N +++Q+ VA++ LHN+FVD  G  F  ARD T   +Q +VL D LP I   +V
Sbjct:  265 IGDGRNDENLLVAQLHVAFLRLHNRFVD-LGNGFQGARDLTRFHYQWLVLNDFLPTICANDV 325          
BLAST of mRNA_H-paniculata_contig24900.6765.1 vs. uniprot
Match: A0A2N4T0L1_9MICC (Uncharacterized protein n=3 Tax=Kocuria TaxID=57493 RepID=A0A2N4T0L1_9MICC)

HSP 1 Score: 51.2 bits (121), Expect = 2.210e-5
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   61 DYRRFPSGFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILDEEV 279
            D  R   G A I D RND N I+ Q+ +A++ LHN+FVD  G +F +AR  T   +Q +++ D LP+++   V
Sbjct:  212 DLPRDAEGRAVIGDHRNDENLIVCQLHLAFLQLHNRFVDS-GASFEEARRLTRWHFQWLIVHDFLPHVVGRSV 283          
BLAST of mRNA_H-paniculata_contig24900.6765.1 vs. uniprot
Match: A0A378GZ14_KOCRO (Animal haem peroxidase n=8 Tax=Kocuria TaxID=57493 RepID=A0A378GZ14_KOCRO)

HSP 1 Score: 51.2 bits (121), Expect = 2.210e-5
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   55 GRDYRRFPS------GFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNIL 267
            GR++  FP       G A I D RND N I++Q  + ++ LHN+FVD EG  F QA+  T   +Q +++ D LP ++
Sbjct:  206 GRNHDGFPDLPRNADGTAIIGDHRNDENLIVAQFHLTFLQLHNRFVD-EGMTFQQAQQMTRWHYQWLIVHDFLPRMV 281          
BLAST of mRNA_H-paniculata_contig24900.6765.1 vs. uniprot
Match: UPI00131F094D (heme peroxidase family protein n=1 Tax=Planctomonas deserti TaxID=2144185 RepID=UPI00131F094D)

HSP 1 Score: 50.4 bits (119), Expect = 4.130e-5
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   61 DYRRFPSGFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILDE 273
            D  R   G A I D RND N I++Q+ +A++ LHN+FV+  G +FA+A+  T   +Q +++ D LP I+ +
Sbjct:  207 DLPRQADGKAIIGDPRNDENLIVAQLHLAFLQLHNRFVES-GQSFAEAQRLTRWHFQWLIVNDFLPRIVGQ 276          
BLAST of mRNA_H-paniculata_contig24900.6765.1 vs. uniprot
Match: UPI0016699051 (heme peroxidase family protein n=1 Tax=Undibacterium terreum TaxID=1224302 RepID=UPI0016699051)

HSP 1 Score: 50.4 bits (119), Expect = 4.130e-5
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   79 SGFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKE--------WQAVVLTDLLPNILDEEV 279
            S  A I D RND N I+SQ+  A++ LHN+ VD++ F     +DAT +E        +Q VVL D LP+I  +E+
Sbjct:  180 SARALIGDKRNDENVIVSQLHSAFLQLHNRLVDEDAF-----KDATFEEIQRQVRWHYQYVVLNDFLPHICGKEL 249          
BLAST of mRNA_H-paniculata_contig24900.6765.1 vs. uniprot
Match: A0A3A4RCN6_9BURK (Peroxidase n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A3A4RCN6_9BURK)

HSP 1 Score: 49.7 bits (117), Expect = 7.670e-5
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   94 ICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILD 270
            I DSRND N I++Q  +A++ LHN FV+  G +F +AR AT+  +Q +++   L  + D
Sbjct:  200 IGDSRNDENLIVAQTHLAFLRLHNSFVE-RGMDFTEARQATVFHYQWLIVNSYLDEVCD 257          
BLAST of mRNA_H-paniculata_contig24900.6765.1 vs. uniprot
Match: A0A7Y5JUV0_9MICO (Peroxidase n=1 Tax=Dermatophilaceae bacterium TaxID=2728912 RepID=A0A7Y5JUV0_9MICO)

HSP 1 Score: 49.3 bits (116), Expect = 9.970e-5
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   61 DYRRFPSGFARICDSRNDNNRILSQITVAWMNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILDE 273
            D  R  +G A + D RND N I+ Q+ +A++ LHN FVD  G +FA A+  T   +Q +++ D LP I+ +
Sbjct:   34 DLPRTGTGTALLGDPRNDENLIICQMQLAFIRLHNGFVDG-GHSFADAQRLTRWHYQWLIVHDFLPRIVGQ 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24900.6765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A4R6JL86_9ACTN1.330e-632.38Heme peroxidase n=1 Tax=Actinoplanes brasiliensis ... [more]
A0A4V6MTD2_9RHOB8.720e-646.77Peroxidase n=1 Tax=Paracoccus subflavus TaxID=2528... [more]
A0A2N4T0L1_9MICC2.210e-539.73Uncharacterized protein n=3 Tax=Kocuria TaxID=5749... [more]
A0A378GZ14_KOCRO2.210e-538.96Animal haem peroxidase n=8 Tax=Kocuria TaxID=57493... [more]
UPI00131F094D4.130e-539.44heme peroxidase family protein n=1 Tax=Planctomona... [more]
UPI00166990514.130e-541.33heme peroxidase family protein n=1 Tax=Undibacteri... [more]
A0A3A4RCN6_9BURK7.670e-540.68Peroxidase n=1 Tax=Comamonadaceae bacterium TaxID=... [more]
A0A7Y5JUV0_9MICO9.970e-539.44Peroxidase n=1 Tax=Dermatophilaceae bacterium TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24900contigH-paniculata_contig24900:3252..3530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue3.8e-07
Seed eggNOG ortholog382464.ABSI01000010_gene3299
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Large extracellular alpha-helical protein
EggNOG OGsCOG2373@1,COG2373@2
COG Functional cat.U
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929729.1639705-CDS-H-paniculata_contig24900:3251..35301622929729.1639705-CDS-H-paniculata_contig24900:3251..3530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24900 3252..3530 +
1691480985.7088637-CDS-H-paniculata_contig24900:3251..35301691480985.7088637-CDS-H-paniculata_contig24900:3251..3530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24900 3252..3530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24900.6765.1prot_H-paniculata_contig24900.6765.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24900 3252..3530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24900.6765.1

>prot_H-paniculata_contig24900.6765.1 ID=prot_H-paniculata_contig24900.6765.1|Name=mRNA_H-paniculata_contig24900.6765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
LQGCSPALTNRRTKFAMNGRDYRRFPSGFARICDSRNDNNRILSQITVAW
MNLHNKFVDDEGFNFAQARDATIKEWQAVVLTDLLPNILDEEV
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mRNA from alignment at H-paniculata_contig24900:3252..3530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24900.6765.1 ID=mRNA_H-paniculata_contig24900.6765.1|Name=mRNA_H-paniculata_contig24900.6765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig24900:3252..3530+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAGGGCTGCAGTCCCGCCCTGACAAACCGCCGAACCAAGTTCGCCAT GAACGGCCGAGACTACAGGCGTTTCCCTTCTGGGTTCGCTCGCATCTGCG ACTCTCGCAACGACAACAACCGCATCCTGAGCCAAATAACCGTGGCTTGG ATGAATCTGCACAACAAGTTCGTAGATGACGAGGGTTTCAATTTTGCGCA GGCTCGCGACGCCACGATCAAGGAGTGGCAGGCCGTTGTGCTGACGGACC TCCTGCCTAACATCCTGGACGAGGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig24900:3252..3530+

>mRNA_H-paniculata_contig24900.6765.1 ID=mRNA_H-paniculata_contig24900.6765.1|Name=mRNA_H-paniculata_contig24900.6765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig24900:3252..3530+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAGGGCTGCAGTCCCGCCCTGACAAACCGCCGAACCAAGTTCGCCAT
GAACGGCCGAGACTACAGGCGTTTCCCTTCTGGGTTCGCTCGCATCTGCG
ACTCTCGCAACGACAACAACCGCATCCTGAGCCAAATAACCGTGGCTTGG
ATGAATCTGCACAACAAGTTCGTAGATGACGAGGGTTTCAATTTTGCGCA
GGCTCGCGACGCCACGATCAAGGAGTGGCAGGCCGTTGTGCTGACGGACC
TCCTGCCTAACATCCTGGACGAGGAGGTGTTGCAGGGCTGCAGTCCCGCC
CTGACAAACCGCCGAACCAAGTTCGCCATGAACGGCCGAGACTACAGGCG
TTTCCCTTCTGGGTTCGCTCGCATCTGCGACTCTCGCAACGACAACAACC
GCATCCTGAGCCAAATAACCGTGGCTTGGATGAATCTGCACAACAAGTTC
GTAGATGACGAGGGTTTCAATTTTGCGCAGGCTCGCGACGCCACGATCAA
GGAGTGGCAGGCCGTTGTGCTGACGGACCTCCTGCCTAACATCCTGGACG
AGGAGGTG
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