mRNA_H-paniculata_contig2489.6759.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2489.6759.1
Unique NamemRNA_H-paniculata_contig2489.6759.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: D7FNT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT4_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 3.660e-105
Identity = 161/225 (71.56%), Postives = 193/225 (85.78%), Query Frame = 3 
Query:  375 QEDGPAATGNLLRTLTGPEFSIALGVSILLAVLTNRLATPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWIKGLCDQAALSLRQAI 1049
            ++  P A G+L+R LTGP  S+ +GV ILLAVL NR+ATPEL+DSQARTDILGV+ASGGL+TNGVYLLDL VK AEEVTLVG F+QEY+  L P ARRDLQWL ESLLL SP T+++VY+ G+ LARVGV+GES  ++DAPIL++CI EG+ GRE YL ALQ LPGK+EFDYLPENCQ VLM PVL+GSAVV++GTNRARAF+PKDI W+KGLC+QAALSLR+A+
Sbjct:   67 EQRSPVA-GSLIRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCISEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAV 290
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: A0A835YLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX2_9STRA)

HSP 1 Score: 219 bits (558), Expect = 4.200e-63
Identity = 121/226 (53.54%), Postives = 158/226 (69.91%), Query Frame = 3 
Query:  372 AQEDGPAA---TGNLLRTLTGPEFSIALGVSILLAVLTNRLA-TPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTT-TVVVYRGGQALARVGVVGESPVVQDA--PILQRCIREG-KYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWIKGLCDQA 1025
            A EDG AA   +G ++R LTG  FS+A G+  L A+L NRLA TP L DSQARTDIL ++ASGGLI NGVYLLDL++K A+ VTLVG F QE  P+L       L+WL ESL+LA P T +V+V+  G+  AR GV+G      DA  PI+ + +RE  +  +E+YLP LQ LPGKIEF YLP NCQGV++Q VL G   V++G ++ARA++P+DIAW+K   ++A
Sbjct:   73 APEDGGAAAAQSGGIIRQLTGSNFSLAAGLLGLAAILINRLALTPYLYDSQARTDILALIASGGLIMNGVYLLDLDIKVADSVTLVGTFEQELDPTLSAEQAAQLRWLCESLILAKPATASVLVHVDGRTRARYGVMGGGATTVDAGAPIMAKALREAARSDKEVYLPVLQNLPGKIEFTYLPANCQGVVIQGVLGGRGAVVVGASQARAYTPRDIAWMKAASERA 298
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: L8LI26_9CHRO (Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC 73106 TaxID=102232 RepID=L8LI26_9CHRO)

HSP 1 Score: 149 bits (377), Expect = 3.820e-38
Identity = 88/213 (41.31%), Postives = 131/213 (61.50%), Query Frame = 3 
Query:  405 LLRTLTGPEFSIALGVSILLAVLTNRLATPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWIKGLCDQAALSLRQ 1043
            +LR L  P  S  LG ++L   L NRL+T EL +SQAR+D+LGV+ S  LI  G+    +  +  E VTL+G    E  P L  S + +L W +  LL  + T +VV+Y  G+ L R G++G++  V+  PI+ RC++  K    +YL +L++ PG IEFDYLPEN QGV+ QP L    V+I+G N  R+++ +D  WI+G+ D+ A++L Q
Sbjct:    9 ILRLL--PLVSGGLGGALL---LFNRLSTLELTNSQARSDVLGVILSALLILVGLLWQQIQSRNPESVTLIGEEGFELDPQLPDSVKTELAWASHLLLTNTVTRSVVIYYEGRVLLRRGILGKTAQVKPGPIIHRCLKTSK---PVYLVSLKLYPGGIEFDYLPENTQGVICQP-LGKEGVMILGANAPRSYTKQDETWIEGIADKLAITLAQ 212
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: UPI00034BD926 (cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI00034BD926)

HSP 1 Score: 144 bits (364), Expect = 2.920e-36
Identity = 86/211 (40.76%), Postives = 129/211 (61.14%), Query Frame = 3 
Query:  405 LLRTLTGPEFSIALGVSILLAVLTNRLATPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWIKGLCDQAALSL 1037
            +LR L  P F+  LG  +L   L NRL T +L DSQAR+D LG++    LI  G+    +  +T + VTLVG    E++P L   A+ +L W ++ LL  + T ++VVY   Q + R GV+GE+  V+   I+QR I + K    +YL  L + PGK+EFDYLPEN QG++ QP+ D   V+I+G N  R+++ +D  WI+G+ D+ A++L
Sbjct:    9 ILRLL--PIFAGGLGGLLL---LINRLLTIQLTDSQARSDALGIIEGAVLILVGLLWQQIQARTPDTVTLVGETGLEFAPELSEVAKTELAWASQLLLTNTVTRSLVVYYDDQTILRRGVLGENSQVKPGAIVQRVISKNK---PVYLVNLNLYPGKVEFDYLPENTQGLICQPIGD-RGVLILGANAPRSYTKQDEKWIEGIADKLAVTL 210
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: U7QFZ0_9CYAN (Uncharacterized protein n=2 Tax=Lyngbya TaxID=28073 RepID=U7QFZ0_9CYAN)

HSP 1 Score: 143 bits (361), Expect = 7.920e-36
Identity = 78/194 (40.21%), Postives = 118/194 (60.82%), Query Frame = 3 
Query:  468 VLTNRLATPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWIKGLCDQAALSLRQAI 1049
            +L NR+ TP+++ SQAR+D LGV+ S  LI  G+    +  K  + V L+G    E+ P L    + +L W    LL  + T +VVVY  GQ L R GV+G++P VQ   I+QR ++  K    +YL  L + PG+IEFDYLPEN QGV+ QP+ D   V+I+G N  R+++ +D  W++G+ D+   +L Q++
Sbjct:   25 LLVNRILTPQILASQARSDALGVILSAVLILTGLLWQQVQPKPPDTVDLIGETGFEFQPDLSDVVKTELAWATHLLLTNTVTRSVVVYYQGQVLLRRGVLGKNPQVQPGAIVQRVLKTQK---PIYLVKLDLYPGRIEFDYLPENTQGVICQPLGD-QGVLILGANAPRSYTQQDENWVEGIADKLENTLGQSL 214
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: A0A2T1C0K6_9CYAN (Cofactor assembly of complex C subunit B n=1 Tax=Merismopedia glauca CCAP 1448/3 TaxID=1296344 RepID=A0A2T1C0K6_9CYAN)

HSP 1 Score: 143 bits (361), Expect = 7.920e-36
Identity = 82/209 (39.23%), Postives = 124/209 (59.33%), Query Frame = 3 
Query:  411 RTLTGPEFSIALGVSILLAVLTNRLATPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWIKGLCDQAALSL 1037
            +T       I  G+   L ++ NRL TPEL DSQAR+D+LGV+ SG L+ +G+       ++ E V L+G+   E +P L  + + +L W +  LL  + T +VVV+  GQ + R GV+GE   V    I++R ++  K    +YL  L+V PG+IEFDYLPEN QG + QP L    V+I+G    R+++ +D AWI+G+ D+ A +L
Sbjct:    5 QTTVWRHLPIVAGILGSLLLIVNRLFTPELTDSQARSDVLGVILSGVLVLSGLLWQQYTPRSPEAVELIGQQGLELAPELPETLKNELAWASHLLLTNTVTRSVVVWYQGQTILRRGVLGEKDRVTPGAIVERVLKTQK---PVYLVDLKVYPGRIEFDYLPENTQGAICQP-LGNKGVLILGAYAPRSYTKQDEAWIEGIADKLADTL 209
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: A0A1Z4RSL5_9CHRO (Uncharacterized protein n=1 Tax=Chondrocystis sp. NIES-4102 TaxID=2005460 RepID=A0A1Z4RSL5_9CHRO)

HSP 1 Score: 143 bits (360), Expect = 1.090e-35
Identity = 89/216 (41.20%), Postives = 132/216 (61.11%), Query Frame = 3 
Query:  396 TGNLLRTLTGPEFSIALGVSILLAVLTNRLATPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGS-AVVIIGTNRARAFSPKDIAWIKGLCDQAALSLR 1040
            T  +LR L  P F  A GVS LL +L NRL T +L DSQAR+D LGV+    LI  G+    +  K  + VTL+G    E    L  +A+ +L W +  L+  + T ++VVY  G+ + R GV+G++  V+   I+QR + +GK    +YL  L + PGK+EFDYLPEN QGV+ QP+  GS  V+I+G N  R+++ +D  WI+G+ D+ A++L+
Sbjct:    6 TNRILRLL--PFF--AGGVSGLL-LLVNRLLTTQLTDSQARSDALGVIEGAVLILVGLLWQQIQAKPPDTVTLIGETGLELDSELPQTAKLELAWASHLLITNTVTRSLVVYYAGKTILRRGVLGKNSQVKPGAIVQRVLTQGK---PVYLVNLNLYPGKVEFDYLPENTQGVICQPI--GSLGVLILGANAPRSYTKQDEVWIEGIADKLAVTLK 211
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: A0A1J1LJ45_9CYAN (Uncharacterized protein n=5 Tax=Planktothrix TaxID=54304 RepID=A0A1J1LJ45_9CYAN)

HSP 1 Score: 143 bits (361), Expect = 1.140e-35
Identity = 84/204 (41.18%), Postives = 122/204 (59.80%), Query Frame = 3 
Query:  426 PEFSIALGVSILLAVLTNRLATPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWIKGLCDQAALSL 1037
            P F+ +LG  +L   L NR+ TPEL+DSQAR+D LGV+ S  LI  G+    +  ++ + V L+G    E    L    + +L W +  LL  + T +VVVY  G+ L R GV+G +P V   PILQR + + K    +YL  L + PG+IEFDYLPEN QGV+ QP L    V+I+G N  R+++ +D  W++G+ D+ A +L
Sbjct:   23 PIFAGSLGGVLL---LINRVLTPELLDSQARSDALGVILSAVLILTGLLWQQIQPRSPDAVELIGEQGFELKQDLPEFVKTELAWASHLLLTNTVTRSVVVYYQGEVLLRRGVLGNNPTVNPGPILQRVLEKQK---PVYLVNLALYPGRIEFDYLPENTQGVICQP-LGNQGVLILGANAPRSYTKQDENWVEGIGDKLANTL 219
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: A0A073CGH1_PLAAG (Uncharacterized protein n=12 Tax=Oscillatoriales TaxID=1150 RepID=A0A073CGH1_PLAAG)

HSP 1 Score: 143 bits (360), Expect = 1.220e-35
Identity = 88/211 (41.71%), Postives = 126/211 (59.72%), Query Frame = 3 
Query:  405 LLRTLTGPEFSIALGVSILLAVLTNRLATPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWIKGLCDQAALSL 1037
            +LR L  P F+ +LG  +L   L NRL TPEL +SQAR+D LGV+ S  LI  G+    +  K+ + V L+G    E  P+L    + +L W +  LL  + T ++VVY  G+ L R GV+G +P V+  PILQR I + K    +YL  L + PG+IEFDYLPEN QGV+ QP L    V+I+G N  R+++ +D  W+ G+ D+   +L
Sbjct:    9 ILRLL--PIFAGSLGGVLL---LINRLLTPELFNSQARSDALGVILSAVLILTGLLWQQIQPKSPDAVDLIGEQGFELKPNLPELIQAELAWASHLLLTNTVTRSIVVYYQGEVLLRRGVLGNNPDVKPGPILQRVIDKQK---PIYLVNLALYPGRIEFDYLPENTQGVICQP-LGNYGVLILGANAPRSYTQQDENWVAGIGDKLTYTL 210
[Close]
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Match: A0A0F5YBK2_9CYAN (Uncharacterized protein n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0F5YBK2_9CYAN)

HSP 1 Score: 142 bits (358), Expect = 1.970e-35
Identity = 79/192 (41.15%), Postives = 116/192 (60.42%), Query Frame = 3 
Query:  468 VLTNRLATPELIDSQARTDILGVMASGGLITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLASPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPALQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWIKGLCDQAALSLRQ 1043
            +L NR  TPE++DSQAR+D LGV+ S  LI  G+    +  K+ + VTL+G    +    L    + +L W +  LL  + T +VVV+   Q L R GV+G++P VQ  PILQR + + K    +YL  L + PG+IEFDYLPEN QGV+ QP L    V+I+G N  R+++ +D  W++G+ D+   +L Q
Sbjct:   25 LLINRTLTPEILDSQARSDALGVILSAVLILTGLLWQQVQPKSPDAVTLIGETGFDLKSDLPDEVKTELAWASHLLLTNTVTRSVVVFYQNQVLLRRGVLGKNPQVQPGPILQRVLDKQK---PVYLVNLALYPGRIEFDYLPENTQGVICQP-LGNRGVLILGANAPRSYTQQDEKWVEGIADKLENTLSQ 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2489.6759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT4_ECTSI3.660e-10571.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLX2_9STRA4.200e-6353.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8LI26_9CHRO3.820e-3841.31Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC... [more]
UPI00034BD9262.920e-3640.76cofactor assembly of complex C subunit B n=1 Tax=P... [more]
U7QFZ0_9CYAN7.920e-3640.21Uncharacterized protein n=2 Tax=Lyngbya TaxID=2807... [more]
A0A2T1C0K6_9CYAN7.920e-3639.23Cofactor assembly of complex C subunit B n=1 Tax=M... [more]
A0A1Z4RSL5_9CHRO1.090e-3541.20Uncharacterized protein n=1 Tax=Chondrocystis sp. ... [more]
A0A1J1LJ45_9CYAN1.140e-3541.18Uncharacterized protein n=5 Tax=Planktothrix TaxID... [more]
A0A073CGH1_PLAAG1.220e-3541.71Uncharacterized protein n=12 Tax=Oscillatoriales T... [more]
A0A0F5YBK2_9CYAN1.970e-3541.15Uncharacterized protein n=1 Tax=Limnoraphis robust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2489contigH-paniculata_contig2489:8234..12455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.3
Seed ortholog evalue1.9e-87
Seed eggNOG ortholog2880.D7FNT4
Preferred nameCCB4
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0010190,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071840
EggNOG free text desc.Cofactor assembly of complex C subunit B, CCB2/CCB4
EggNOG OGs28KGG@1,2QSXP@2759
Ec32 ortholog descriptionProtein of unknown function DUF2930
Ec32 orthologEc-12_003460.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1785
Cds size954
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.4244156-UTR-H-paniculata_contig2489:8233..89601622929727.4244156-UTR-H-paniculata_contig2489:8233..8960Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2489 8234..8960 -
1691480984.8298542-UTR-H-paniculata_contig2489:8233..89601691480984.8298542-UTR-H-paniculata_contig2489:8233..8960Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2489 8234..8960 -
1622929727.5017416-UTR-H-paniculata_contig2489:12351..124551622929727.5017416-UTR-H-paniculata_contig2489:12351..12455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2489 12352..12455 -
1691480984.8976326-UTR-H-paniculata_contig2489:12351..124551691480984.8976326-UTR-H-paniculata_contig2489:12351..12455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2489 12352..12455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.4385743-CDS-H-paniculata_contig2489:8960..91581622929727.4385743-CDS-H-paniculata_contig2489:8960..9158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 8961..9158 -
1691480984.84358-CDS-H-paniculata_contig2489:8960..91581691480984.84358-CDS-H-paniculata_contig2489:8960..9158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 8961..9158 -
1622929727.4513109-CDS-H-paniculata_contig2489:9490..96491622929727.4513109-CDS-H-paniculata_contig2489:9490..9649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 9491..9649 -
1691480984.8532212-CDS-H-paniculata_contig2489:9490..96491691480984.8532212-CDS-H-paniculata_contig2489:9490..9649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 9491..9649 -
1622929727.4643812-CDS-H-paniculata_contig2489:10286..104091622929727.4643812-CDS-H-paniculata_contig2489:10286..10409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 10287..10409 -
1691480984.866831-CDS-H-paniculata_contig2489:10286..104091691480984.866831-CDS-H-paniculata_contig2489:10286..10409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 10287..10409 -
1622929727.475506-CDS-H-paniculata_contig2489:10897..111341622929727.475506-CDS-H-paniculata_contig2489:10897..11134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 10898..11134 -
1691480984.878494-CDS-H-paniculata_contig2489:10897..111341691480984.878494-CDS-H-paniculata_contig2489:10897..11134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 10898..11134 -
1622929727.4882598-CDS-H-paniculata_contig2489:12114..123511622929727.4882598-CDS-H-paniculata_contig2489:12114..12351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 12115..12351 -
1691480984.8877835-CDS-H-paniculata_contig2489:12114..123511691480984.8877835-CDS-H-paniculata_contig2489:12114..12351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2489 12115..12351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2489.6759.1prot_H-paniculata_contig2489.6759.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2489 8961..12351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2489.6759.1

>prot_H-paniculata_contig2489.6759.1 ID=prot_H-paniculata_contig2489.6759.1|Name=mRNA_H-paniculata_contig2489.6759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp
MVSSRRTTTSWVLCVATLAQHVLAFNLQFQSSSVIVGGIWDLRQHQRSPP
RCRSHHALSSFYTRQKLPCSSRRNYWRQEAASTNNNEKNAQEDGPAATGN
LLRTLTGPEFSIALGVSILLAVLTNRLATPELIDSQARTDILGVMASGGL
ITNGVYLLDLNVKTAEEVTLVGRFLQEYSPSLVPSARRDLQWLAESLLLA
SPTTTVVVYRGGQALARVGVVGESPVVQDAPILQRCIREGKYGRELYLPA
LQVLPGKIEFDYLPENCQGVLMQPVLDGSAVVIIGTNRARAFSPKDIAWI
KGLCDQAALSLRQAIAI*
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mRNA from alignment at H-paniculata_contig2489:8234..12455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2489.6759.1 ID=mRNA_H-paniculata_contig2489.6759.1|Name=mRNA_H-paniculata_contig2489.6759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4222bp|location=Sequence derived from alignment at H-paniculata_contig2489:8234..12455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATACATGTTGTTTCCGCTGGGGCCCGCTGGAATCGAGAAAAGCTCGC
TGGCTGCGTGGTTATTCTCCTTATCTGTGCGTGAATCTACTGGCCACTGT
GTAAATGGTGTCCAGCAGACGAACGACCACATCATGGGTTTTGTGTGTGG
CAACGTTAGCGCAGCACGTTTTGGCGTTTAATTTGCAGTTTCAGTCATCA
TCTGTCATCGTGGGGGGTATATGGGACTTGAGACAGCACCAAAGGAGTCC
TCCGCGATGCAGATCACACCACGCATTGTCATCATTTTACACTCGACAGA
AGTTGCCCTGCTCCTCCAGGCGAAACTATTGGAGGCAAGAGGTGAGGTAT
CCTCGAATATATCTGAAGAAAGGTCGGAGATCTGTTCGATACACTGTGGG
TGACGCTGAGTAGAGATGAATATTGTCCTTGCTGTACTTCACTCTACTGC
TGGATGGTGATACGGTACAGTACTGTATTGAACTATCTCTCTGACTGTAT
CCTAGTGCGGCCACATGCACATCGGTATTTTCGTAATTTTTTGCAGAACT
CGATTTCGGAGACGGCAAAAATGTCCTCTCAGATGTGGTCTGTATTTTGT
TCAAAGTGGGGCCACGTCGATGAACGTGTCCATTCTACTCTACTGACGAC
CGGTGTTCAGTCTGGGGAAAAACATCGGTACGTCTCCAATACAGGCATTT
ATTGTGTTGATGAGCAACTTCACTCAGCAGAACAAAGCATTTGCCTGCCC
AGCGCCCCATTCACAGAGCCCCGTTCGTACGTGATGAAACTCACTGAGCC
ACAGGCTATTCTTGCCATTTGGCAAGGTTCACGAGGAGCAGGGCTTCTCG
AGCTAAAAATTGCCGTGGGCTTGAATAATATCTCAGGCATGTGTCTACCG
TGTGCTGCTCGATGATCTTTAATGGTAGTGTTGGTTGAAAGTGAAGCTGT
TGGTTGCTTCGTTCATGAGTGGCGAGACCATGGTCGGCGGTATGGTTAGG
CTGAGATTGGCGGCTTTTTCAAGTAGCGACGAGTAAAGACGAACGAATGG
TTGTTATGTTGACGTTGGTGCTTTTATACCGGAAACCAAAACTCAAGAGG
AGATGCCGTGACATACCCCATGGAAATTTCTACGGTCTCCGTGCCAGGAT
ATCGATTGGAAACGAGCATCAGACCACCGGTCCTTGTTCGCCAGCGGAGA
GCAAAAACCACCACAGCTCAACCCCACTTTCTGCTATGACGTGGTCTATA
ATTTGCTCAACCGCATTGAACCTCTTCTTGTCACCATTACGCGCCCCGGT
ACATATATTTCGTACCTGCAGGCTGCCTCGACAAACAACAACGAGAAGAA
TGCTCAAGAGGATGGCCCTGCGGCGACCGGGAATCTTCTGCGAACGCTCA
CCGGACCTGAGTTTTCCATCGCGCTTGGCGTGAGTATCTTGCTGGCGGTA
CTCACCAACAGACTCGCAACGCCGGAGCTGATCGACTCGCAGGCACGAAC
AGACATCCTTGGAGTCATGGCCAGTGGGGGATTGATTACCAATGGCGTCT
ATCTCCTGGTGAGCAGCAGCGAACGTTTTTCTTCTTTTTGCGTATATTCT
TTGTGTGTTGTATTACGCACGCAGTCGATGCTACCGATGCGGCGCTGAAT
GCTCTGACAGATGTCTGCCGAGTGCCGGTTAAGCTTGAGGGCTTTCTGTC
AACAATATGCTGCGTTCAAATTTTCAGTTTGCCCCCACTATTCAGCTCGG
CATCGTTGACAAATCGGAAGTGTTTGGTTCGTTCCCTTGTCTGCTGCATC
TTCAAAGGTGTCCTGCCCCCCTAGCGTTGCGATTTGAACACTTCATGGTG
TGGGTTTAACCAGCGTCTTCCATAAGCAAGCAGAATCGCAAACTATCGTT
ATATGGTCAACCCGAAATGTTTCATGTTCTCGGATCGAGCAATTTGTCGG
AGCCGTGGTTCTGTCCACTGTGCCATGACTGGCAGACCGATGATTTTGCT
GTTTTGGAGCGCTGAAACTTGCTGCACCTCAAATTGTCATTCGCAGGACC
TAAATGTAAAGACGGCGGAGGAGGTCACCCTAGTGGGACGCTTCCTGCAG
GAATATTCCCCATCTCTCGTCCCCAGCGCCAGGCGAGACCTTCAATGGCT
GGCCGAGTCGTTGCTTTTGGTGAGTAGAGGTGTCAAAGTAGAATTTTCTG
CAATGGAGGTTGGCACGGCAACATTCGGAGGAAGCGATTTAACCATGTTG
TCATCGTGACGGTATAGCCACAGGAGCCTTTCTATCTCACGTTTCTTACA
ATGTTTGTACTGCTGTAGAATCTGTATGCTGCCTCCTGCGACACTCTCCG
CGATCGATGGTATGCTTGTCGTGTCCGCCGTTGTTGTTGTCACCTTGCTG
TCGAACTCGAGTGCGGGATGGATCTAGTAATATATAGAAGTCGTTTCATG
CTTGGAACCAATGAGCTGTTGCAGCACCCGTCGTGATTGCGCGATTAGTG
CACCACTGGGAAACTTCAATGCTCTACTTGCTCGTGTTGGGCGCCGCACC
AGAGGTCGTAATGCGTAAACTTGTGCACTGCGAATACCACGTTTGTGGGA
TCGTTCCCAGTGCCTCCGCACAAAAGAAGTCAGCGCTCCCCCTGTGCGTT
CATCATTCACAACGTTTTGAAGTGCAATAGATTCTGCAGTGCGTCGCTCC
CACCCACACCAACGTGTTTTTTTTTCGTACCCAGCATAATTTGCGCTGAA
ATTCCAACGTCGACTTATTTTCGCTTCTCGTTCATCTTGTTCTGATGACG
CTGCAGGCCTCCCCGACGACGACGGTGGTGGTGTACCGTGGCGGCCAAGC
GCTCGCCCGCGTGGGCGTTGTGGGAGAGTCTCCCGTGGTGCAAGATGCCC
CGATCCTACAGAGGTGCATTCGAGAGGGGAAATACGGACGAGAGCTGTAC
TTGCCCGCTCTTCAGGTGTGCGTGCGAATCGTGCAACTAAGCCTGTTTTC
TGTACTTCGAGCAGGAATTTTTACATCTTTTACGTTTGGAATAATATGAA
GGATGCATGGCAGCTCCTCAGCAGTCCACAATTGTCACCTACGCAGATGA
TGTCCGTTACTGTTCTGCGCGATGAGGGGTCCAACGTAAACGTCTTTGAT
ATCGAGCTCTGTAAGAGCTTCAAAAAGGTGTTGAATTAGGAAGTGAATCG
TAAAATGTAGTCAAGAGGGAAAGGTGGTACTTCGTTATTGCCCAGCCCCA
TCAGACCGACTTCTTAATTCTCACCGCGTATTCTCGTATCACCACAGGTT
TTGCCAGGAAAAATTGAGTTTGACTACCTGCCGGAGAACTGTCAAGGCGT
GCTGATGCAGCCTGTGCTAGACGGGTCGGCGGTGGTCATCATCGGCACTA
ATCGTGCGCGTGCGTTCTCACCCAAAGACATTGCGTGGATAAAGGGTCTG
TGTGACCAGGCAGCTTTGTCATTGCGTCAGGCCATTGCAATCTAACGACC
TTCGAGATCAGCAAGCGGAAGCGATTCACTGAAATTTCTTTGCGGATGAC
TCACGGTCAAAGCATGGACTGGTGTCTTGGATGTGTCGTTTCTGCACCCA
GTTTCATTGTCGTACTAGTAATTTCAGTCTCTTCAGAAGGGATGACTTTT
CCTCCTTATGAAGCGATGGAAAAACTTGGTGGGCACCCGCACCACCTGCT
GTTGTCGCATTTTCTCTCTCTCTCTCTCTCTCTCTTGGACATATAACCAT
TGACGAAAATCAAGTGTATTGCAGCAATCACAGGATAGCGTTGGACATGC
CCAAGGGAGTAATTATATGCTCTATGTGTTTTCCGCCCTTACGGCATCGT
AGGGGAGGAAGTATGTAGCATGCTAGCCTATATCTATCGTCTTACTCGAT
CAAGGCGAATGACCTATTCACATAGTATCATAGCCGTAATATTAATACAA
TCCTCACACCTTTTTTGCTGCGTATCTTGAACGAGAAGGACGATTAAAAA
CGAATTTCACTTGAGCAACATGCCACATACTCTGCTAGCCTATCGGTTGT
GTAGTACTACGCTGCGGATCCACTCGTATACCAACACATACATAGATCGA
ACTCATTACCTTGCACTGACACACATAATTTATCAACCGTACTCTAGCGT
CCAAAGTCGATCCTATCCTGTATCACACGCATCTTTGTAACCATTGCATT
CATTATTTTGACGAGAACGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2489:8234..12455-

>mRNA_H-paniculata_contig2489.6759.1 ID=mRNA_H-paniculata_contig2489.6759.1|Name=mRNA_H-paniculata_contig2489.6759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig2489:8234..12455- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTCCAGCAGACGAACGACCACATCATGGGTTTTGTGTGTGGCAAC
GTTAGCGCAGCACGTTTTGGCGTTTAATTTGCAGTTTCAGTCATCATCTG
TCATCGTGGGGGGTATATGGGACTTGAGACAGCACCAAAGGAGTCCTCCG
CGATGCAGATCACACCACGCATTGTCATCATTTTACACTCGACAGAAGTT
GCCCTGCTCCTCCAGGCGAAACTATTGGAGGCAAGAGATGGTGTCCAGCA
GACGAACGACCACATCATGGGTTTTGTGTGTGGCAACGTTAGCGCAGCAC
GTTTTGGCGTTTAATTTGCAGTTTCAGTCATCATCTGTCATCGTGGGGGG
TATATGGGACTTGAGACAGCACCAAAGGAGTCCTCCGCGATGCAGATCAC
ACCACGCATTGTCATCATTTTACACTCGACAGAAGTTGCCCTGCTCCTCC
AGGCGAAACTATTGGAGGCAAGAGGCTGCCTCGACAAACAACAACGAGAA
GAATGCTCAAGAGGATGGCCCTGCGGCGACCGGGAATCTTCTGCGAACGC
TCACCGGACCTGAGTTTTCCATCGCGCTTGGCGTGAGTATCTTGCTGGCG
GTACTCACCAACAGACTCGCAACGCCGGAGCTGATCGACTCGCAGGCACG
AACAGACATCCTTGGAGTCATGGCCAGTGGGGGATTGATTACCAATGGCG
TCTATCTCCTGGCTGCCTCGACAAACAACAACGAGAAGAATGCTCAAGAG
GATGGCCCTGCGGCGACCGGGAATCTTCTGCGAACGCTCACCGGACCTGA
GTTTTCCATCGCGCTTGGCGTGAGTATCTTGCTGGCGGTACTCACCAACA
GACTCGCAACGCCGGAGCTGATCGACTCGCAGGCACGAACAGACATCCTT
GGAGTCATGGCCAGTGGGGGATTGATTACCAATGGCGTCTATCTCCTGGA
CCTAAATGTAAAGACGGCGGAGGAGGTCACCCTAGTGGGACGCTTCCTGC
AGGAATATTCCCCATCTCTCGTCCCCAGCGCCAGGCGAGACCTTCAATGG
CTGGCCGAGTCGTTGCTTTTGGACCTAAATGTAAAGACGGCGGAGGAGGT
CACCCTAGTGGGACGCTTCCTGCAGGAATATTCCCCATCTCTCGTCCCCA
GCGCCAGGCGAGACCTTCAATGGCTGGCCGAGTCGTTGCTTTTGGCCTCC
CCGACGACGACGGTGGTGGTGTACCGTGGCGGCCAAGCGCTCGCCCGCGT
GGGCGTTGTGGGAGAGTCTCCCGTGGTGCAAGATGCCCCGATCCTACAGA
GGTGCATTCGAGAGGGGAAATACGGACGAGAGCTGTACTTGCCCGCTCTT
CAGGCCTCCCCGACGACGACGGTGGTGGTGTACCGTGGCGGCCAAGCGCT
CGCCCGCGTGGGCGTTGTGGGAGAGTCTCCCGTGGTGCAAGATGCCCCGA
TCCTACAGAGGTGCATTCGAGAGGGGAAATACGGACGAGAGCTGTACTTG
CCCGCTCTTCAGGTTTTGCCAGGAAAAATTGAGTTTGACTACCTGCCGGA
GAACTGTCAAGGCGTGCTGATGCAGCCTGTGCTAGACGGGTCGGCGGTGG
TCATCATCGGCACTAATCGTGCGCGTGCGTTCTCACCCAAAGACATTGCG
TGGATAAAGGGTCTGTGTGACCAGGCAGCTTTGTCATTGCGTCAGGCCAT
TGCAATCTAAGTTTTGCCAGGAAAAATTGAGTTTGACTACCTGCCGGAGA
ACTGTCAAGGCGTGCTGATGCAGCCTGTGCTAGACGGGTCGGCGGTGGTC
ATCATCGGCACTAATCGTGCGCGTGCGTTCTCACCCAAAGACATTGCGTG
GATAAAGGGTCTGTGTGACCAGGCAGCTTTGTCATTGCGTCAGGCCATTG
CAATCTAA
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