prot_H-paniculata_contig24888.6758.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24888.6758.1
Unique Nameprot_H-paniculata_contig24888.6758.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length100
Homology
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.810e-17
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEY-ITPKGLKIGIIRTDNGGEF 100
            C GCSTA+     +P KT   A    +R++VDL G +RV SLGG  Y +I+ DDY+R   V F+K K DA  A + Y+AE         + ++R+DNGGEF
Sbjct:  544 CLGCSTAKGLSKPIPNKTSTGALKKLQRVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEF 644          
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-14
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 100
            C+ C + + HR +  K   +RA+ AAE ++ D+ GPMR +SL GS Y ++ VDDYSR   V F+K K +     + + +      G  + I+RTD GGEF
Sbjct:  586 CESCVSGKHHRDSFAKGKSRRASQAAELIHADVCGPMRTSSLNGSRYFVVFVDDYSRMTWVFFLKNKSEVLPTFKKFRSLIEKQSGNAVKILRTDRGGEF 685          
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A4Y2Q694_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q694_ARAVE)

HSP 1 Score: 77.0 bits (188), Expect = 2.560e-14
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 100
            C+ C+  +  R   PKK++ R T   E ++ DL GP+RV S+G SLY M  +D+YSR   V+F+K K DA AA +     +   K +KI I  +DNGGEF
Sbjct:  472 CEICAINKLTRAPFPKKSN-RVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKSKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEF 570          
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A4Y2RJW2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2RJW2_ARAVE)

HSP 1 Score: 76.6 bits (187), Expect = 3.400e-14
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 100
            C+ C+  +  R   PKK++ R T   E ++ DL GP+RV S+G SLY M  +D+YSR   V+F+K K DA AA +     +   K +KI I  +DNGGEF
Sbjct:  472 CEICAINKLTRAPFPKKSN-RVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKTKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEF 570          
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A4Y2PWC7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2PWC7_ARAVE)

HSP 1 Score: 76.6 bits (187), Expect = 3.440e-14
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 100
            C+ C+  +  R   PKK++ R T   E ++ DL GP+RV S+G SLY M  +D+YSR   V+F+K K DA AA +     +   K +KI I  +DNGGEF
Sbjct:   27 CEICAINKLTRAPFPKKSN-RVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKTKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEF 125          
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A4Y2HGZ9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HGZ9_ARAVE)

HSP 1 Score: 76.6 bits (187), Expect = 3.450e-14
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 100
            C+ C+  +  R   PKK++ R T   E ++ DL GP+RV S+G SLY M  +D+YSR   V+F+K K DA AA +     +   K +KI I  +DNGGEF
Sbjct:  472 CEICAINKLTRAPFPKKSN-RVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKTKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEF 570          
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A0J7K9E1_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K9E1_LASNI)

HSP 1 Score: 76.3 bits (186), Expect = 4.680e-14
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 100
            C GC   ++ +    +   +++    E ++ DL GPM V S+GGS Y+M ++DDYSR   V F+K K +A   ++++I++    KGLKI   R+DNG E+
Sbjct:  226 CHGCCIGKSTKVPCKRINGRQSRGILELIHSDLCGPMSVKSIGGSRYIMTLIDDYSRKTMVYFLKSKDEAVHNIKNFISKVERDKGLKIKRFRSDNGLEY 325          
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A699L9M2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699L9M2_TANCI)

HSP 1 Score: 74.3 bits (181), Expect = 1.560e-13
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 100
            C  C   ++ R + P K+   +      LY+DL GPMR+ S+ G  YV++IVDDYSR   V F++ K +A   +++++          + IIRTDNG EF
Sbjct:   38 CPSCEQGKSKRASHPPKSVPNSRQRLHLLYMDLCGPMRIASINGKRYVLVIVDDYSRYTWVHFLRSKDEAPEVIKTFLKRITVLLQSPVIIIRTDNGTEF 137          
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A699ISM6_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699ISM6_TANCI)

HSP 1 Score: 74.3 bits (181), Expect = 2.240e-13
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 100
            C  C   ++ R + P K    +      L++DL GPMR+ S+ G  YV++IVDDYSR   V F++ K DA A +  ++          I IIRTDNG EF
Sbjct:  526 CPSCEQRKSKRASHPPKPVPNSRQRVHLLHIDLCGPMRIASINGKRYVLVIVDDYSRYTWVHFLRSKDDAPAVIIKFLKRITVLLQSPIIIIRTDNGTEF 625          
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 73.9 bits (180), Expect = 3.090e-13
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 100
            C  C T +  R       +++++   + ++VDL GP+ V SLGGS Y++ +VDD+SR   V F+K K +A   L  YI +     G K+  +RTDNG EF
Sbjct:  461 CVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEF 560          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3E0_9PHAE6.810e-1743.56Integrase catalytic domain-containing protein (Fra... [more]
UPI001CC6DD691.010e-1439.00uncharacterized protein LOC110630572 n=1 Tax=Manih... [more]
A0A4Y2Q694_ARAVE2.560e-1443.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2RJW2_ARAVE3.400e-1443.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2PWC7_ARAVE3.440e-1443.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2HGZ9_ARAVE3.450e-1443.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K9E1_LASNI4.680e-1437.00Retrovirus-related pol polyprotein from transposon... [more]
A0A699L9M2_TANCI1.560e-1337.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A699ISM6_TANCI2.240e-1339.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A293MM55_ORNER3.090e-1338.00Reverse transcriptase, gag, polyprotein (Fragment)... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 15..100
e-value: 6.9E-8
score: 33.9
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 1..100
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..100
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 11..100
score: 10.302
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 21..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24888contigH-paniculata_contig24888:20..319 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24888.6758.1mRNA_H-paniculata_contig24888.6758.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24888 20..319 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24888.6758.1 ID=prot_H-paniculata_contig24888.6758.1|Name=mRNA_H-paniculata_contig24888.6758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMI
IVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf