mRNA_H-paniculata_contig24888.6758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24888.6758.1
Unique NamemRNA_H-paniculata_contig24888.6758.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 6.810e-17
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEY-ITPKGLKIGIIRTDNGGEF 300
            C GCSTA+     +P KT   A    +R++VDL G +RV SLGG  Y +I+ DDY+R   V F+K K DA  A + Y+AE         + ++R+DNGGEF
Sbjct:  544 CLGCSTAKGLSKPIPNKTSTGALKKLQRVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEF 644
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BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-14
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 300
            C+ C + + HR +  K   +RA+ AAE ++ D+ GPMR +SL GS Y ++ VDDYSR   V F+K K +     + + +      G  + I+RTD GGEF
Sbjct:  586 CESCVSGKHHRDSFAKGKSRRASQAAELIHADVCGPMRTSSLNGSRYFVVFVDDYSRMTWVFFLKNKSEVLPTFKKFRSLIEKQSGNAVKILRTDRGGEF 685
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BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A4Y2Q694_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q694_ARAVE)

HSP 1 Score: 77.0 bits (188), Expect = 2.560e-14
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 300
            C+ C+  +  R   PKK++ R T   E ++ DL GP+RV S+G SLY M  +D+YSR   V+F+K K DA AA +     +   K +KI I  +DNGGEF
Sbjct:  472 CEICAINKLTRAPFPKKSN-RVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKSKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEF 570
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BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A4Y2RJW2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2RJW2_ARAVE)

HSP 1 Score: 76.6 bits (187), Expect = 3.400e-14
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 300
            C+ C+  +  R   PKK++ R T   E ++ DL GP+RV S+G SLY M  +D+YSR   V+F+K K DA AA +     +   K +KI I  +DNGGEF
Sbjct:  472 CEICAINKLTRAPFPKKSN-RVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKTKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEF 570
[Close]
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A4Y2PWC7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2PWC7_ARAVE)

HSP 1 Score: 76.6 bits (187), Expect = 3.440e-14
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 300
            C+ C+  +  R   PKK++ R T   E ++ DL GP+RV S+G SLY M  +D+YSR   V+F+K K DA AA +     +   K +KI I  +DNGGEF
Sbjct:   27 CEICAINKLTRAPFPKKSN-RVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKTKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEF 125
[Close]
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A4Y2HGZ9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HGZ9_ARAVE)

HSP 1 Score: 76.6 bits (187), Expect = 3.450e-14
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 300
            C+ C+  +  R   PKK++ R T   E ++ DL GP+RV S+G SLY M  +D+YSR   V+F+K K DA AA +     +   K +KI I  +DNGGEF
Sbjct:  472 CEICAINKLTRAPFPKKSN-RVTSLLEIVHSDLCGPIRVPSIGKSLYFMTFIDEYSRYCVVKFLKTKSDALAAFKEIKCLWENQKSVKIKIFMSDNGGEF 570
[Close]
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A0J7K9E1_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K9E1_LASNI)

HSP 1 Score: 76.3 bits (186), Expect = 4.680e-14
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 300
            C GC   ++ +    +   +++    E ++ DL GPM V S+GGS Y+M ++DDYSR   V F+K K +A   ++++I++    KGLKI   R+DNG E+
Sbjct:  226 CHGCCIGKSTKVPCKRINGRQSRGILELIHSDLCGPMSVKSIGGSRYIMTLIDDYSRKTMVYFLKSKDEAVHNIKNFISKVERDKGLKIKRFRSDNGLEY 325
[Close]
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A699L9M2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699L9M2_TANCI)

HSP 1 Score: 74.3 bits (181), Expect = 1.560e-13
Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 300
            C  C   ++ R + P K+   +      LY+DL GPMR+ S+ G  YV++IVDDYSR   V F++ K +A   +++++          + IIRTDNG EF
Sbjct:   38 CPSCEQGKSKRASHPPKSVPNSRQRLHLLYMDLCGPMRIASINGKRYVLVIVDDYSRYTWVHFLRSKDEAPEVIKTFLKRITVLLQSPVIIIRTDNGTEF 137
[Close]
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A699ISM6_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699ISM6_TANCI)

HSP 1 Score: 74.3 bits (181), Expect = 2.240e-13
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 300
            C  C   ++ R + P K    +      L++DL GPMR+ S+ G  YV++IVDDYSR   V F++ K DA A +  ++          I IIRTDNG EF
Sbjct:  526 CPSCEQRKSKRASHPPKPVPNSRQRVHLLHIDLCGPMRIASINGKRYVLVIVDDYSRYTWVHFLRSKDDAPAVIIKFLKRITVLLQSPIIIIRTDNGTEF 625
[Close]
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 73.9 bits (180), Expect = 3.090e-13
Identity = 38/100 (38.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:    1 CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMIIVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF 300
            C  C T +  R       +++++   + ++VDL GP+ V SLGGS Y++ +VDD+SR   V F+K K +A   L  YI +     G K+  +RTDNG EF
Sbjct:  461 CVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEF 560
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24888.6758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3E0_9PHAE6.810e-1743.56Integrase catalytic domain-containing protein (Fra... [more]
UPI001CC6DD691.010e-1439.00uncharacterized protein LOC110630572 n=1 Tax=Manih... [more]
A0A4Y2Q694_ARAVE2.560e-1443.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2RJW2_ARAVE3.400e-1443.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2PWC7_ARAVE3.440e-1443.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2HGZ9_ARAVE3.450e-1443.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K9E1_LASNI4.680e-1437.00Retrovirus-related pol polyprotein from transposon... [more]
A0A699L9M2_TANCI1.560e-1337.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A699ISM6_TANCI2.240e-1339.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A293MM55_ORNER3.090e-1338.00Reverse transcriptase, gag, polyprotein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24888contigH-paniculata_contig24888:20..319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog67593.Physo140766
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QI8W@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.3867-CDS-H-paniculata_contig24888:19..3191622929727.3867-CDS-H-paniculata_contig24888:19..319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24888 20..319 -
1691480984.8060234-CDS-H-paniculata_contig24888:19..3191691480984.8060234-CDS-H-paniculata_contig24888:19..319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24888 20..319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24888.6758.1prot_H-paniculata_contig24888.6758.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24888 20..319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24888.6758.1

>prot_H-paniculata_contig24888.6758.1 ID=prot_H-paniculata_contig24888.6758.1|Name=mRNA_H-paniculata_contig24888.6758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
CKGCSTAEAHRFAVPKKTDKRATWAAERLYVDLGGPMRVTSLGGSLYVMI
IVDDYSRNQAVEFIKKKIDATAALQSYIAEYITPKGLKIGIIRTDNGGEF
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mRNA from alignment at H-paniculata_contig24888:20..319-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24888.6758.1 ID=mRNA_H-paniculata_contig24888.6758.1|Name=mRNA_H-paniculata_contig24888.6758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig24888:20..319- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAAAGGATGCTCCACTGCCGAGGCTCACCGATTCGCCGTGCCGAAAAA
GACCGACAAACGAGCCACATGGGCAGCAGAGCGCCTATACGTCGACCTAG
GCGGACCCATGCGAGTAACCAGCTTGGGCGGCAGCTTGTATGTGATGATT
ATCGTCGACGACTACTCGCGGAACCAGGCTGTCGAGTTCATCAAGAAGAA
GATCGACGCCACTGCAGCTCTCCAGAGCTACATCGCCGAATATATAACGC
CGAAGGGACTCAAGATCGGCATCATTCGCACGGACAACGGCGGGGAGTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig24888:20..319-

>mRNA_H-paniculata_contig24888.6758.1 ID=mRNA_H-paniculata_contig24888.6758.1|Name=mRNA_H-paniculata_contig24888.6758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig24888:20..319- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAAAGGATGCTCCACTGCCGAGGCTCACCGATTCGCCGTGCCGAAAAA
GACCGACAAACGAGCCACATGGGCAGCAGAGCGCCTATACGTCGACCTAG
GCGGACCCATGCGAGTAACCAGCTTGGGCGGCAGCTTGTATGTGATGATT
ATCGTCGACGACTACTCGCGGAACCAGGCTGTCGAGTTCATCAAGAAGAA
GATCGACGCCACTGCAGCTCTCCAGAGCTACATCGCCGAATATATAACGC
CGAAGGGACTCAAGATCGGCATCATTCGCACGGACAACGGCGGGGAGTTC
TGCAAAGGATGCTCCACTGCCGAGGCTCACCGATTCGCCGTGCCGAAAAA
GACCGACAAACGAGCCACATGGGCAGCAGAGCGCCTATACGTCGACCTAG
GCGGACCCATGCGAGTAACCAGCTTGGGCGGCAGCTTGTATGTGATGATT
ATCGTCGACGACTACTCGCGGAACCAGGCTGTCGAGTTCATCAAGAAGAA
GATCGACGCCACTGCAGCTCTCCAGAGCTACATCGCCGAATATATAACGC
CGAAGGGACTCAAGATCGGCATCATTCGCACGGACAACGGCGGGGAGTTC
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