mRNA_H-paniculata_contig24882.6757.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24882.6757.1
Unique NamemRNA_H-paniculata_contig24882.6757.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24882.6757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24882contigH-paniculata_contig24882:1499..2887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1105
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24882.6757.1prot_H-paniculata_contig24882.6757.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24882 1871..2727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.319941-UTR-H-paniculata_contig24882:1498..18701622929727.319941-UTR-H-paniculata_contig24882:1498..1870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24882 1499..1870 +
1691480984.7604795-UTR-H-paniculata_contig24882:1498..18701691480984.7604795-UTR-H-paniculata_contig24882:1498..1870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24882 1499..1870 +
1622929727.3537638-UTR-H-paniculata_contig24882:2727..28871622929727.3537638-UTR-H-paniculata_contig24882:2727..2887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24882 2728..2887 +
1691480984.789999-UTR-H-paniculata_contig24882:2727..28871691480984.789999-UTR-H-paniculata_contig24882:2727..2887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24882 2728..2887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929727.331247-CDS-H-paniculata_contig24882:1870..20841622929727.331247-CDS-H-paniculata_contig24882:1870..2084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24882 1871..2084 +
1691480984.7707772-CDS-H-paniculata_contig24882:1870..20841691480984.7707772-CDS-H-paniculata_contig24882:1870..2084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24882 1871..2084 +
1622929727.3436332-CDS-H-paniculata_contig24882:2368..27271622929727.3436332-CDS-H-paniculata_contig24882:2368..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24882 2369..2727 +
1691480984.7802413-CDS-H-paniculata_contig24882:2368..27271691480984.7802413-CDS-H-paniculata_contig24882:2368..2727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24882 2369..2727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24882.6757.1

>prot_H-paniculata_contig24882.6757.1 ID=prot_H-paniculata_contig24882.6757.1|Name=mRNA_H-paniculata_contig24882.6757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MFEVHPRRDICFGCVRYGRDAAIARNRAISHEKPLRRGGVPRRQRDASCH
HERRFRVLQELRFLDQPSKIHGQVLFHLVSHEVGRVSSNIIRGMARPDEY
VPNDDIARLGNESALAFLAQIGGHDSSGTASTPSRSPGAPEKKRTKIKNN
TNFCDWWVLRGWCFGFRASNSRFFHAYTTKLMKWSSGATV*
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mRNA from alignment at H-paniculata_contig24882:1499..2887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24882.6757.1 ID=mRNA_H-paniculata_contig24882.6757.1|Name=mRNA_H-paniculata_contig24882.6757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1389bp|location=Sequence derived from alignment at H-paniculata_contig24882:1499..2887+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAATCGTGTGCTGCACGCGTTTGCTTTACAGCTAAGTGATGTACGAA
TATTCACGTCTACATACCTTGCCGGCATAACACAGGGTACCTATTCACAA
AGAGTACGGTCAGTATTTCGTTTCCTGACACAACGTGAGCCGACCGTGAG
TTGATGCCGACGATGCTTACCGTCCTGCAGCCATAATTTTCGTATAAGCA
ATCTTCTCACGAGAAGGCCGTCGTCTTTTTCGACGCCGGCAGAGCGTAAT
CTCCTCAAGAAGAAAGAGCTCTATCGACGGTACATGAAGAAATCATTCGA
AATAACTTGCATCGTATCAGTCGACGATCGCGTACGACTACTTGAGTCGC
GAGCCCACAAAGCGAACGCCACATGTTCGAAGTACACCCCCGACGTGATA
TTTGTTTTGGATGTGTGAGATACGGCAGGGACGCAGCTATTGCACGAAAC
AGGGCAATATCCCACGAGAAGCCTCTCAGACGAGGTGGAGTTCCTCGCCG
ACAACGAGACGCCTCTTGTCATCACGAGCGCCGATTTCGTGTGCTCCAAG
AATTGCGATTCTTGGACCAACCATCTAAAATTCACGGTACGTGCGTTTAC
CTGTAGGTATGTGGCTATCTCTCTCTGATCTCGAAAGGTGTCACACGTAG
CTGCCGTTTTATGTATGACTTACGGCGACCCTAAAGCGCCATGAAGGAGG
GTAGATATTAACTTTACTCCATTCCTTTTAACGCCTGCAGTATCGTACGA
GTAGGACACATGTTACTCTCGCCTTGCCAAAACATTTCTCACTTCCGCTG
TAATTCTCGACAAACAGGTCGTGCCAAAACATAACGCCCGACCCTGCTGC
GTTTTGACGAAAACTCGTAGGGCAAGTCCTGTTTCACCTAGTCTCCCACG
AGGTCGGACGCGTGTCCTCGAATATCATCCGCGGAATGGCTAGACCCGAC
GAATATGTCCCCAACGACGATATTGCTCGCCTTGGCAACGAATCGGCTCT
TGCGTTCCTCGCACAAATTGGCGGGCATGACTCTAGCGGGACGGCATCGA
CGCCAAGTAGATCTCCTGGTGCTCCTGAGAAGAAGCGCACCAAAATCAAG
AATAATACAAACTTCTGTGATTGGTGGGTGCTTCGCGGGTGGTGCTTCGG
CTTTAGGGCGTCTAACAGCAGATTCTTTCATGCGTACACAACAAAATTAA
TGAAATGGTCGAGTGGGGCTACTGTATAGGGCGGGGGAAGAGTTAAACGT
TTTGCGAGCGCAGTTTCGAAAAGCGGTTAAAAACAACAATCAAATCGAAA
CTTGTTCAATGGCATGTATTCGCGAATCCTCAGCGGTGCACAATATCCGA
TAGAGAATGTCATTATGCTCAAGGGATCTTTTTGCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24882:1499..2887+

>mRNA_H-paniculata_contig24882.6757.1 ID=mRNA_H-paniculata_contig24882.6757.1|Name=mRNA_H-paniculata_contig24882.6757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig24882:1499..2887+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGAAGTACACCCCCGACGTGATATTTGTTTTGGATGTGTGAGATA
CGGCAGGGACGCAGCTATTGCACGAAACAGGGCAATATCCCACGAGAAGC
CTCTCAGACGAGGTGGAGTTCCTCGCCGACAACGAGACGCCTCTTGTCAT
CACGAGCGCCGATTTCGTGTGCTCCAAGAATTGCGATTCTTGGACCAACC
ATCTAAAATTCACGATGTTCGAAGTACACCCCCGACGTGATATTTGTTTT
GGATGTGTGAGATACGGCAGGGACGCAGCTATTGCACGAAACAGGGCAAT
ATCCCACGAGAAGCCTCTCAGACGAGGTGGAGTTCCTCGCCGACAACGAG
ACGCCTCTTGTCATCACGAGCGCCGATTTCGTGTGCTCCAAGAATTGCGA
TTCTTGGACCAACCATCTAAAATTCACGGGCAAGTCCTGTTTCACCTAGT
CTCCCACGAGGTCGGACGCGTGTCCTCGAATATCATCCGCGGAATGGCTA
GACCCGACGAATATGTCCCCAACGACGATATTGCTCGCCTTGGCAACGAA
TCGGCTCTTGCGTTCCTCGCACAAATTGGCGGGCATGACTCTAGCGGGAC
GGCATCGACGCCAAGTAGATCTCCTGGTGCTCCTGAGAAGAAGCGCACCA
AAATCAAGAATAATACAAACTTCTGTGATTGGTGGGTGCTTCGCGGGTGG
TGCTTCGGCTTTAGGGCGTCTAACAGCAGATTCTTTCATGCGTACACAAC
AAAATTAATGAAATGGTCGAGTGGGGCTACTGTATAGGGCAAGTCCTGTT
TCACCTAGTCTCCCACGAGGTCGGACGCGTGTCCTCGAATATCATCCGCG
GAATGGCTAGACCCGACGAATATGTCCCCAACGACGATATTGCTCGCCTT
GGCAACGAATCGGCTCTTGCGTTCCTCGCACAAATTGGCGGGCATGACTC
TAGCGGGACGGCATCGACGCCAAGTAGATCTCCTGGTGCTCCTGAGAAGA
AGCGCACCAAAATCAAGAATAATACAAACTTCTGTGATTGGTGGGTGCTT
CGCGGGTGGTGCTTCGGCTTTAGGGCGTCTAACAGCAGATTCTTTCATGC
GTACACAACAAAATTAATGAAATGGTCGAGTGGGGCTACTGTATAG
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