prot_H-paniculata_contig11039.675.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11039.675.1
Unique Nameprot_H-paniculata_contig11039.675.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length47
Homology
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.140e-22
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 46
            DP DPYKLT+E RELGLVVCRGTQVSLISP DGMEEIENPF+APEG
Sbjct:   57 DPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPEG 102          
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.540e-19
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 46
            DP+DPY++TDE R LGLVVCRGTQVSLISP DGMEEI NPF+A EG
Sbjct:   54 DPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAEG 99          
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: K8Z5Y3_NANGC (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z5Y3_NANGC)

HSP 1 Score: 77.0 bits (188), Expect = 1.700e-17
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPE 45
            DP DPY+LTDE RELGLV+CRGTQVSLISP +G EEI NPF+  E
Sbjct:   30 DPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAE 74          
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A8J2S7J2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7J2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.200e-17
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPE 45
            DP DPYK TDERR LGLVVCRG QVSL+SP DGMEEI NPF+  E
Sbjct:   52 DPDDPYKKTDERRRLGLVVCRGLQVSLVSPVDGMEEIANPFIQQE 96          
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A4D9CX90_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX90_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.560e-17
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPE 45
            DP DPY+LTDE RELGLV+CRGTQVSLISP +G EEI NPF+  E
Sbjct:   58 DPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAE 102          
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.810e-17
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVA 43
            DP DPY++TDE R LG+VVCRGTQVSLISP DG EEI NPF+A
Sbjct:   66 DPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFIA 108          
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.170e-16
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPE 45
            DP DPY++TD+ R LG+VVCRGTQVSLISP DG EEI NPFVA E
Sbjct:   76 DPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAE 120          
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A022QZ17_ERYGU (Sm domain-containing protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A022QZ17_ERYGU)

HSP 1 Score: 74.3 bits (181), Expect = 3.530e-16
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 46
            DP DP K TD+ R LGL+VCRGT V L+SPTDG +EIENPFV P+G
Sbjct:   53 DPDDPLKTTDQTRHLGLIVCRGTAVMLVSPTDGTDEIENPFVQPDG 98          
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A2I0AXT9_9ASPA (Putative small nuclear ribonucleoprotein G n=3 Tax=Petrosaviidae TaxID=1437197 RepID=A0A2I0AXT9_9ASPA)

HSP 1 Score: 73.9 bits (180), Expect = 9.670e-16
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 46
            DP DP K+TD+ R LGL++CRGT V L+SPTDG +EI NPF+ PEG
Sbjct:   79 DPDDPLKITDQTRRLGLIICRGTAVMLVSPTDGTDEISNPFIQPEG 124          
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A6P4AR03_ZIZJJ (sm-like protein LSM7 n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P4AR03_ZIZJJ)

HSP 1 Score: 73.2 bits (178), Expect = 1.010e-15
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 46
            DP DP K TD+ R LGL+VCRGT V L+SPTDG +EI NPFV PEG
Sbjct:   53 DPDDPLKTTDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPEG 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPU6_ECTSI3.140e-2289.13Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A836C8L6_9STRA4.540e-1980.43Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
K8Z5Y3_NANGC1.700e-1775.56U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=N... [more]
A0A8J2S7J2_9STRA2.200e-1777.78Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CX90_9STRA3.560e-1775.56Sm domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A7S2BSU7_9STRA8.810e-1776.74Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CML5_9STRA2.170e-1675.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A022QZ17_ERYGU3.530e-1669.57Sm domain-containing protein n=3 Tax=Mesangiosperm... [more]
A0A2I0AXT9_9ASPA9.670e-1665.22Putative small nuclear ribonucleoprotein G n=3 Tax... [more]
A0A6P4AR03_ZIZJJ1.010e-1569.57sm-like protein LSM7 n=5 Tax=Mesangiospermae TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..45
e-value: 5.0E-8
score: 34.5
NoneNo IPR availablePANTHERPTHR10553:SF5U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7coord: 1..45
NoneNo IPR availablePANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 1..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11039contigH-paniculata_contig11039:2322..2462 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11039.675.1mRNA_H-paniculata_contig11039.675.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11039 2322..2462 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11039.675.1 ID=prot_H-paniculata_contig11039.675.1|Name=mRNA_H-paniculata_contig11039.675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG*
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