mRNA_H-paniculata_contig2486.6752.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2486.6752.1
Unique NamemRNA_H-paniculata_contig2486.6752.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2486.6752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2486contigH-paniculata_contig2486:11620..18031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size580
Cds size441
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2486.6752.1prot_H-paniculata_contig2486.6752.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2486 14965..18031 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.4739983-UTR-H-paniculata_contig2486:11619..117261622929726.4739983-UTR-H-paniculata_contig2486:11619..11726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2486 11620..11726 +
1691480984.4749615-UTR-H-paniculata_contig2486:11619..117261691480984.4749615-UTR-H-paniculata_contig2486:11619..11726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2486 11620..11726 +
1622929726.488116-UTR-H-paniculata_contig2486:14934..149641622929726.488116-UTR-H-paniculata_contig2486:14934..14964Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2486 14935..14964 +
1691480984.485897-UTR-H-paniculata_contig2486:14934..149641691480984.485897-UTR-H-paniculata_contig2486:14934..14964Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2486 14935..14964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.5101097-CDS-H-paniculata_contig2486:14964..152011622929726.5101097-CDS-H-paniculata_contig2486:14964..15201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2486 14965..15201 +
1691480984.4964454-CDS-H-paniculata_contig2486:14964..152011691480984.4964454-CDS-H-paniculata_contig2486:14964..15201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2486 14965..15201 +
1622929726.5282357-CDS-H-paniculata_contig2486:17827..180311622929726.5282357-CDS-H-paniculata_contig2486:17827..18031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2486 17828..18031 +
1691480984.5066664-CDS-H-paniculata_contig2486:17827..180311691480984.5066664-CDS-H-paniculata_contig2486:17827..18031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2486 17828..18031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2486.6752.1

>prot_H-paniculata_contig2486.6752.1 ID=prot_H-paniculata_contig2486.6752.1|Name=mRNA_H-paniculata_contig2486.6752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MGSSDKVGRRKPHAPSESTRRLLERRRRRSRKHGGGAGVVNLLYRLGLTG
RGRNTVDTCAMKVVGVMLLLCVIFGLALQAHQEQRATSSSILHLQQLRQQ
LRPAHEDGDDTGADRANLPSEGNKEKQASSLVYHDPADDVTLMYRDA
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mRNA from alignment at H-paniculata_contig2486:11620..18031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2486.6752.1 ID=mRNA_H-paniculata_contig2486.6752.1|Name=mRNA_H-paniculata_contig2486.6752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6412bp|location=Sequence derived from alignment at H-paniculata_contig2486:11620..18031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCAGATGGCACGTTCGGCGATTTGATTGTTTGGACTGACAGTGTGGCC
CGATTAGCTTCGCATTGTGATCTGGAGCACTGCACTATTGATCGGAGATA
CCCATAGGTATGTGCACCTCCGTTGAATTTCGCCTATCTTCCGCTAGCCA
TTTCCTTGACTCAAACCGCAGGAGTCTCGGATCTGGCACTACTACCATAC
AGATAGTTATTCTAGTTGGTCCGCCGTTTGTTAACGGCCCATGCTTGTTG
CTGCTAGCTGCTGCCTTGCTGTCTACTGCCAGCTGCTGATTGCCTTCTCC
CTGCTGGGTGAAACCAAGAAAGTGGGAAAGACAGTACAGTGAAGTACATC
ACAGTAAAAATGAGCTAGCAAGCAAGTGATACAGCAACGGCGCCAAAGCT
ATGCTTTTCTTGAGAACCGTGATTTGCTCTACACAAAACTTGCGTTTCTC
ATTGTAAATGTGATATATATGGTCAAGTGCTCCAGTAGTACTCGAGATCC
CATTTCACTGTGGTTAATTTTGACCGTGGTGCAATTTGTGTGTCTTCTGC
CAGTGGCAGAGGTGGTACTACTGTTCTGTGCTGACTATATTGTTGGGGGT
GGTTGGTGTTCGTTTGGTGCGTCGACAGGGGTGATCAGAGCATGTCCGGT
GTGTTGTCGACATAGATACAGTGGTGATGGGCCGAACTTTTGGGCCATCT
CTTATGGGACATTGCAAAAATCTACAAAAATTGAAAATTTTCAAAAAATC
CAATTCAAAAATCCAGTTTCCAACTCTTATGGGACATTCTTGATGCGATT
TTTTAGGAAAAAATCCGATCGGGGCAAAACGCACCCCAGGTCACTTGGAA
ATTTTGAAAAATTCCAAGTGAGGTTTGGCGCTATTGGAAACTTTTTGCAG
CGGTAGAGTATGACTCCATGCACCAACGACATCGTGCGAGCACCTACAGT
ACAGGACAGTACAATACACTACCGTGCGCCTGTACCCGCGATGGGGCACA
TATCCTGTCCGTGATAATGCCAATGAGGTAGAATAAGTATGAATCCTCTT
CCGACGAGGACGAAATGCTGCTGAATATATGCCAAGCACAACTAAATGAG
TTCCACGCGATGGGTGAAGCTGCGCAACTGTTTCTGAATGACCTCGGGGT
GGCGGGGGGGGGGTTTCTGCTCTCGCCATCGTGCCTGTGGTAACTGTTTT
AGGCTGCGTACTGCATATTCCGCCCAATTTTGAACTCATGGACCATGCCA
TTACGACCTACTCCTTGCAGTCACAACCGCCTTCCCAACTTTGGAACGCC
TCAACAAAAATTCCCATGTTCCATGAGACGTGGCGATCCGATTTTAAATT
GGATATTTTTCACTTAGATTTTTGCAAAAATGAAGTTTTCAATTTCATTT
TTTTGAATCCCCATAAGAATTGGGTTTTTGCTTTTTAGGACACCATATTG
TACCAGCATCGACTCTTTGTCAAATGTTTATGGTGGAGGGACATGAGCAT
GATACACAAAATGGTGCTGGATTTTTTTCTGGAGTGCTCAAAATTGAACG
AGTTAAGGGCTTACTCGTCATCGGGGATCCCACATCGTTAAACTCCAAGA
CTGCTGGTGTCTACGTTGTCTTTTTTGTTGACCCTGTGCCGAATTACGTT
GCACATACTGTCGCGATTGCGTATGTTGAATATTTGAAAAATACGTTGCG
CCACAGTCGAAAATCCGTGTTTTCGGCGATATTTGACCCGTATTTTAAGA
CCCGGTTTTGTCATTCGATTTTTTGCGGTTTTTCGGGATTTTCCTTGTAT
CGGTGACGACGTTTGGGCTAAAATTTTGGGATCAATAGACATAAGCGTTA
TGCACACAATGGTGCTAATATGTTTTCCGAGCGCTTAAAAATAAACGAGT
TCAGGGCTTACCGGTCGTCGGGGATCCTCAGCTTTCAAGTCCGGAGCTGC
TAGTGTCTCCTCCATTTTTTTTGTTATGAACCCTGTGCCGAATTACATCG
CGCACAATGTCGTAATTTCATATTCTTGAATAATTAAAAGTTCGTTGCGC
TGCAGTCGAAGAAAACGTTTTTCAGGTGTGTTGTCTAACGTAATTTTTTC
CCAAGAATGGGTTTTTCTCTTGTATCGCAACGGTAACCGAAAATCAGAAC
ACATGTTATATGTACGAACTCTTACTCTTGCCAACATCTTGACACCGTCA
GCGTTATTGCCCTGGCTTCGTTCGTATCTCCCCTCTGGTGTTCGAAGAGC
GCCACAGCGCGGCAGCCAATGTGTTGCCTGCAGTTGTGCATATTGTCTGT
ACAGGCGTGATTACAAGCATATATGTGCAGGCATACCGTCCGTAGAGTAG
AGACAGGGGTCTGTAGTTCTACTATTCAACATAGAATGCGTGGGATTAAG
ATATTGTATTCGCACACACAACCAGCGTATCGCATGCGATCTGGGGGTCT
ACGATTAAGCGTTGTGGCTAGTTGGAACCACAGGTGTATTGTAGAGCTGC
CATCTATTTTTTTTTATTGTATACCTGTTATATGTATAGACCCTGGAACC
GTCGGGTATATTTGAATGTTTCTTTTAACGGAATAACTGAACAAACTTGA
TCTATTTGGATGGAGGCGCCTCGGTCACCTGAGGCTAAGGAGAGATTTAC
TAGTCCCTTTGCCTCCCGTTCAGGTTCGATTTGACTGGCGTCGCACTAAC
ATCCTGGAGTGACAATATACCCGGGTGGCTAGCTTTAAATTCAGATTGTC
GGTCACCCACTCGAGTTATGCTGAGCACGCACTCTAACTTCTCGTGTTCG
TTCTTGAGCCTCAAATCCGCACACCACACCTCATATATCTAGATTAGCCT
CAAATTCTACTTTGCTAGGAAGCAAAGCTCCGCCGTGTTTGCGTACCAGG
TTCGAGCGAGGTAATTCACGCAGCGCCGACTGCACCAGCACCACGGTGCT
AATCAGGGAGCTGGACACCCAATTTATTTCTTGTTGTCGTATCTCCTGTG
TTGAATCTTTTTTCGCTTCTTTCTTCTCCAATTTGTCGAGCTCCAACCTG
TACAAGATGAAATGGCGCCCTTTGCATCGTTTTGCCATCACTAGCTCTGC
GCCAAATAGCCCACTTGTGAAAAGAGGGTGTTGTCCTCGACAAACAGTGG
TGGGGGGTGATCCTCTTGTCTTTTGTACAGGGTATCTGTCCCCCCACACA
TCGAATGGATGATGCCGCCAGAGTACAACTTAAACCGCAAACAGCGTACT
CCACATGAGCTTCTCGTTACCCATGTTATCCACATGTCGCCTCTACACTC
CCACACGTATCGCAGAGAAATCTCGAGGGCCAGTTAGTTTCAAAGATGGG
GAGCAGTGACAAAGTGGGTCGGCGAAAACCGCACGCCCCGAGTGAGAGCA
CTCGCAGACTTTTGGAGAGGCGACGACGGCGGAGTAGGAAACACGGTGGC
GGGGCAGGGGTTGTGAACCTGCTTTACAGGTTGGGGTTAACGGGGCGCGG
CCGGAATACGGTGGATACATGCGCCATGAAGGTTGTCGGGGTGATGTTGC
TGCTTTGTGTGATATTTGGCTTGGCTCTGCAGGTGCGTTTGGGCGACAAC
AACAATACTATGCCAACTTGGGCATACAGACCAGACCAGATCAGTTTTGC
TGGTTTGGTCGCGTTGCACGTTTCGAGGGTTTCTGATGTAGGTGGGATGG
GATGAGATAGAAAAACACTGCGTTCCTCGGTAAGGTACTTGCTCACTTGA
AAAGTCATGGCTGCTGAGACGGGTATGAATTGCGATTTCTCAGCGCTGGG
TCATTTTAATGTTTGCATGTGGCTACGCTAGTATTGTATGACAGCACTCG
AGACGTAAGCTTTGGCCCAGCCGGGGGAGGAGGGAATAAGCGGGTACGAC
CATAAATACCATAGCCAGAAACCGTTGACCTTGCATCCGTACAGTGCTGG
GAGCGGGCGGTATGCCGAGGATCCGTCGGCCGAGGCTAAAACGCTGGTAC
TGCAGCAGGGGGGGCAGGAGGTGTGAAGAGTAAATATTCTGCCCAACGGT
GTTGACCATACTGTGAAGGGTATTATACACGCCAGTGTGTTGCAACAATA
TACGAGTGTCCGTACTGCCATAACCATGCATTCATGTATGGAGCAAGGCA
GCTGCGATGTGACACGACTACAGCGACATGGTCACGGTACGGAGAGGACA
CCACACGACACGACACGACATGACATGACACGGGACACAGCGCCCTGTTC
ACTTCTCTGGGGAGCGCCTGTAGAGTATCGTGCTGCTCGCACCTTACCTG
GTTTACTTGTCAGTACCGCCATTGGGTTGTCCATTTGGGTGTTTTCTGTC
CTATCGTGACTACTTGTTTGCTCTATAGTTGTTGCCCCCCGTCCTCTCCT
CTCTACCCTCCTCGCCTCCCGCCTTCCCGCCCGGTGCAACTGGGGGTGAG
TGCAGCTTGGCATGCACGTCATCCACGAGCCTCTCGCTTGGCATAGCCTG
TTTCTCCGACAGGTGCGTGGGTGGGGGGCACGGAGTGCGGAGGGGAGAGG
GGAAGAAGGGGGGTCTTCTTAAATGATGAACACACGGTCACAGTTCAAAT
TGTAAACCAATGATGAGATCCAAGCGCTCTCAAGGTGGGATTTTGCGCAA
CTCCCTTTATTCTTCCGGTGCCCATTTCGCCCGGAAAAATATTCACATTC
TACCCTTTCTCGTTCGAGAATACGTGCGTTTCTTTCTCAGCGGGCAATCT
CGGTGATATGCATGCGACAGACTGTAGTTGGATATTAAGTTGACGATTTT
TTCATACAAGCGTGAAAATCACGGTTCACGCAGACGCGAAATCGCTGGCT
ACTTACTAGTACTGCACATTTGTGGTGTTCACCCGTGAAGTTGAAAACCT
CTCCTTTAATCTTGCACTGCACAGCACAAGTACCGCGTAGATCTAGGAAG
CAGTCAGCCCGTCTCTCCTCTGTCCAAGGATACCGCGGCGAATTTTCGGG
AGGGGCGGGTGCCCGGAGTACCGGTTGGACAAAAACGAGAAACAAGCGAG
GGACCGGGAGATGGTGTAACACCGAAAATGGTTGAGGGAGTAGATATGCG
TTCGGATGGCGGGCTAGTTGATGAACAGCGCACTTCGGTCGCCGCTGCCG
CACGACACCAAGAGGTGGCCATGGCTGCTCGCGAACGGGATCACTGGGGA
AAGACGCCGGTGCGGGTTTTTTTCCCGCTGCGCAGCTCATTATTGTCATG
TTTCAACGGCCGACTGAACGGGCGGCGCATTTTCAACCTCGCTTCCTAGA
AATATCCTCCCCTCTACGTTCCTCGTTGAGGGTTGAAGTTGACTTTTGTA
ACATCGAGCTGTAAAATTGCTGTATCTAAGGCATGGGGGGAAGTCGATGA
GGTATATTCTGTGATCTTGTTGACCTCGGTCGCAAAGTTCGCACTCTATG
ATGTGTCTGCTGAACTGGTAGTTGTATTACCCTAGAGAAAAGGTACATAT
GACCATATTCCATCGGAAGAGTACAGCGGATTATGGTACTAAGTTGACTG
AAGTTCCGTGCGGTACTTGAGGTACAGTTCCATCTATCAGTTGTGCAATA
TTTCGTTTCCCAGGGATGCCCAAGCCGCCCATGGCAGAATCCGGTTGGTG
TAACAACTCAAGGATGATGAGTAGTGGCTAGTATCATCATTGTAAAATAC
AGCCTGCCCGGCCGAAACCCGGCATTCTCCGTCTGGTCAATGGTAGAGAG
ACTACGGCATGCATTTTAGTTAGCACCCTCCTCCTCTCCTTTCCCCCCTA
TCAACCAAATCAACCAGCTTGAGGTCTGCCGAACATCCAATTTTTTGGAT
ACCCGGAAGGCCCAGTAAACCGACGGTCAAATCCGATTTGGCGACTGAGG
TGAATCACCCTTGCCTCTTGGGAGCGTAAGCCAGAATCGGCGGGAACTCG
GCATGTCACTCCGCTCTGGAATCCTAGCGATTCGCTAGGCATGCCTTGTT
GTGAGTAACCGCTACCCAACCACGCACCCACTCACCGTCTCACGTGGACA
GTTAGGCGGATAGACAGTCGACATACCGTTAGACGAAGCAATTGCTGAGA
ATTAACCGTTAGGCCCCCCTTGCCCTCCTATACCCTTCCTTCATTTGACC
CCCCATCATCTGCACCCCTCCGCCTCGCCTGGTTCGAAAACCTGCATTAT
CATCACAGGCACACCAGGAACAACGCGCTACTAGTAGTTCGATATTACAC
TTACAGCAGCTACGGCAACAGCTACGACCAGCGCATGAGGATGGCGATGA
TACCGGTGCTGATCGTGCTAACCTCCCCTCTGAAGGGAACAAAGAAAAGC
AGGCCAGTTCGCTGGTTTACCACGACCCGGCCGATGACGTCACGCTGATG
TACCGCGACGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig2486:11620..18031+

>mRNA_H-paniculata_contig2486.6752.1 ID=mRNA_H-paniculata_contig2486.6752.1|Name=mRNA_H-paniculata_contig2486.6752.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig2486:11620..18031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAGCAGTGACAAAGTGGGTCGGCGAAAACCGCACGCCCCGAGTGA
GAGCACTCGCAGACTTTTGGAGAGGCGACGACGGCGGAGTAGGAAACACG
GTGGCGGGGCAGGGGTTGTGAACCTGCTTTACAGGTTGGGGTTAACGGGG
CGCGGCCGGAATACGGTGGATACATGCGCCATGAAGGTTGTCGGGGTGAT
GTTGCTGCTTTGTGTGATATTTGGCTTGGCTCTGCAGATGGGGAGCAGTG
ACAAAGTGGGTCGGCGAAAACCGCACGCCCCGAGTGAGAGCACTCGCAGA
CTTTTGGAGAGGCGACGACGGCGGAGTAGGAAACACGGTGGCGGGGCAGG
GGTTGTGAACCTGCTTTACAGGTTGGGGTTAACGGGGCGCGGCCGGAATA
CGGTGGATACATGCGCCATGAAGGTTGTCGGGGTGATGTTGCTGCTTTGT
GTGATATTTGGCTTGGCTCTGCAGGCACACCAGGAACAACGCGCTACTAG
TAGTTCGATATTACACTTACAGCAGCTACGGCAACAGCTACGACCAGCGC
ATGAGGATGGCGATGATACCGGTGCTGATCGTGCTAACCTCCCCTCTGAA
GGGAACAAAGAAAAGCAGGCCAGTTCGCTGGTTTACCACGACCCGGCCGA
TGACGTCACGCTGATGTACCGCGACGCTGCACACCAGGAACAACGCGCTA
CTAGTAGTTCGATATTACACTTACAGCAGCTACGGCAACAGCTACGACCA
GCGCATGAGGATGGCGATGATACCGGTGCTGATCGTGCTAACCTCCCCTC
TGAAGGGAACAAAGAAAAGCAGGCCAGTTCGCTGGTTTACCACGACCCGG
CCGATGACGTCACGCTGATGTACCGCGACGCT
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