mRNA_H-paniculata_contig11039.675.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11039.675.1
Unique NamemRNA_H-paniculata_contig11039.675.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: D8LPU6_ECTSI (Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPU6_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.140e-22
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 138
            DP DPYKLT+E RELGLVVCRGTQVSLISP DGMEEIENPF+APEG
Sbjct:   57 DPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPEG 102
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A836C8L6_9STRA (Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.540e-19
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 138
            DP+DPY++TDE R LGLVVCRGTQVSLISP DGMEEI NPF+A EG
Sbjct:   54 DPSDPYRVTDETRTLGLVVCRGTQVSLISPMDGMEEIANPFLAAEG 99
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: K8Z5Y3_NANGC (U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z5Y3_NANGC)

HSP 1 Score: 77.0 bits (188), Expect = 1.700e-17
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPE 135
            DP DPY+LTDE RELGLV+CRGTQVSLISP +G EEI NPF+  E
Sbjct:   30 DPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAE 74
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A8J2S7J2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7J2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.200e-17
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPE 135
            DP DPYK TDERR LGLVVCRG QVSL+SP DGMEEI NPF+  E
Sbjct:   52 DPDDPYKKTDERRRLGLVVCRGLQVSLVSPVDGMEEIANPFIQQE 96
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A4D9CX90_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX90_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.560e-17
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPE 135
            DP DPY+LTDE RELGLV+CRGTQVSLISP +G EEI NPF+  E
Sbjct:   58 DPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAE 102
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A7S2BSU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSU7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.810e-17
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVA 129
            DP DPY++TDE R LG+VVCRGTQVSLISP DG EEI NPF+A
Sbjct:   66 DPEDPYRITDESRTLGMVVCRGTQVSLISPVDGTEEISNPFIA 108
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A7S2CML5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CML5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.170e-16
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPE 135
            DP DPY++TD+ R LG+VVCRGTQVSLISP DG EEI NPFVA E
Sbjct:   76 DPDDPYRITDDTRTLGMVVCRGTQVSLISPMDGTEEIANPFVAAE 120
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A022QZ17_ERYGU (Sm domain-containing protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A022QZ17_ERYGU)

HSP 1 Score: 74.3 bits (181), Expect = 3.530e-16
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 138
            DP DP K TD+ R LGL+VCRGT V L+SPTDG +EIENPFV P+G
Sbjct:   53 DPDDPLKTTDQTRHLGLIVCRGTAVMLVSPTDGTDEIENPFVQPDG 98
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A2I0AXT9_9ASPA (Putative small nuclear ribonucleoprotein G n=3 Tax=Petrosaviidae TaxID=1437197 RepID=A0A2I0AXT9_9ASPA)

HSP 1 Score: 73.9 bits (180), Expect = 9.670e-16
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 138
            DP DP K+TD+ R LGL++CRGT V L+SPTDG +EI NPF+ PEG
Sbjct:   79 DPDDPLKITDQTRRLGLIICRGTAVMLVSPTDGTDEISNPFIQPEG 124
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BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Match: A0A6P4AR03_ZIZJJ (sm-like protein LSM7 n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P4AR03_ZIZJJ)

HSP 1 Score: 73.2 bits (178), Expect = 1.010e-15
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG 138
            DP DP K TD+ R LGL+VCRGT V L+SPTDG +EI NPFV PEG
Sbjct:   53 DPDDPLKTTDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPEG 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11039.675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPU6_ECTSI3.140e-2289.13Sm-like protein LSm7 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A836C8L6_9STRA4.540e-1980.43Sm-like protein LSm7 n=1 Tax=Tribonema minus TaxID... [more]
K8Z5Y3_NANGC1.700e-1775.56U6 snRNA-associated Sm-like protein LSm7 n=1 Tax=N... [more]
A0A8J2S7J2_9STRA2.200e-1777.78Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CX90_9STRA3.560e-1775.56Sm domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A7S2BSU7_9STRA8.810e-1776.74Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CML5_9STRA2.170e-1675.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A022QZ17_ERYGU3.530e-1669.57Sm domain-containing protein n=3 Tax=Mesangiosperm... [more]
A0A2I0AXT9_9ASPA9.670e-1665.22Putative small nuclear ribonucleoprotein G n=3 Tax... [more]
A0A6P4AR03_ZIZJJ1.010e-1569.57sm-like protein LSM7 n=5 Tax=Mesangiospermae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11039contigH-paniculata_contig11039:2322..2462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue3.8e-16
Seed eggNOG ortholog2880.D8LPU6
Preferred nameLSM7
KEGG koko:K12626,ko:K16353
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005688,GO:0005689,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process
EggNOG OGsKOG1781@1,KOG1781@2759
Ec32 ortholog descriptionSm-like protein LSm7
Ec32 orthologEc-18_002540.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko04516
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.5228872-CDS-H-paniculata_contig11039:2321..24621622928811.5228872-CDS-H-paniculata_contig11039:2321..2462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11039 2322..2462 -
1691480629.1610994-CDS-H-paniculata_contig11039:2321..24621691480629.1610994-CDS-H-paniculata_contig11039:2321..2462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11039 2322..2462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11039.675.1prot_H-paniculata_contig11039.675.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11039 2322..2462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11039.675.1

>prot_H-paniculata_contig11039.675.1 ID=prot_H-paniculata_contig11039.675.1|Name=mRNA_H-paniculata_contig11039.675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
DPADPYKLTDERRELGLVVCRGTQVSLISPTDGMEEIENPFVAPEG*
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mRNA from alignment at H-paniculata_contig11039:2322..2462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11039.675.1 ID=mRNA_H-paniculata_contig11039.675.1|Name=mRNA_H-paniculata_contig11039.675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig11039:2322..2462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCCTGCTGATCCTTATAAGCTGACAGACGAGAGAAGAGAGCTAGGTTT
GGTTGTGTGCCGTGGTACGCAAGTGAGCTTGATTTCCCCTACCGATGGGA
TGGAAGAGATCGAGAACCCCTTCGTCGCGCCGGAAGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11039:2322..2462-

>mRNA_H-paniculata_contig11039.675.1 ID=mRNA_H-paniculata_contig11039.675.1|Name=mRNA_H-paniculata_contig11039.675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig11039:2322..2462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCCTGCTGATCCTTATAAGCTGACAGACGAGAGAAGAGAGCTAGGTTT
GGTTGTGTGCCGTGGTACGCAAGTGAGCTTGATTTCCCCTACCGATGGGA
TGGAAGAGATCGAGAACCCCTTCGTCGCGCCGGAAGGGTAGGATCCTGCT
GATCCTTATAAGCTGACAGACGAGAGAAGAGAGCTAGGTTTGGTTGTGTG
CCGTGGTACGCAAGTGAGCTTGATTTCCCCTACCGATGGGATGGAAGAGA
TCGAGAACCCCTTCGTCGCGCCGGAAGGGTAG
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