mRNA_H-paniculata_contig24850.6748.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24850.6748.1
Unique NamemRNA_H-paniculata_contig24850.6748.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: A0A1X6P3Y0_PORUM (HIRAN domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3Y0_PORUM)

HSP 1 Score: 58.9 bits (141), Expect = 7.100e-11
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            + GV H+GE+V LVR+P+N YD NAIRVDN+TGTQV
Sbjct:    4 YDGVIHQGEWVELVRQPHNPYDANAIRVDNMTGTQV 39
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: D7G848_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G848_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 6.450e-10
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            + GVAH GEFV+LVREPNN YD+NAIRVDNLT  QV
Sbjct:   51 YRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQV 86
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: R1F415_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F415_EMIHU)

HSP 1 Score: 58.9 bits (141), Expect = 4.220e-9
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            + GV H+GE  +LVREPNN+YDKNAIRVDNL+  QV
Sbjct:  142 YQGVLHQGEMASLVREPNNQYDKNAIRVDNLSAAQV 177
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: A0A7R9Y7S4_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y7S4_9VIRI)

HSP 1 Score: 57.8 bits (138), Expect = 1.070e-8
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            + G+AH GE+V LVREPNN YD NA+RVDN  G QV
Sbjct:  159 YEGIAHAGEYVTLVREPNNPYDPNAVRVDNFDGKQV 194
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: A0A830HVA9_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HVA9_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 9.610e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            +SGVAHRGE+V L REP+N YD+NA++V N+ G QV
Sbjct:   65 YSGVAHRGEYVTLEREPHNPYDRNAVKVLNMNGMQV 100
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: A0A835Z8N6_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.790e-7
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    7 GVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            GV H GE+VNLVREP N YD+NAIRVDN+   QV
Sbjct:   57 GVIHEGEYVNLVREPFNPYDRNAIRVDNMDNIQV 90
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: A0A7S2P3P1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3P1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.360e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            ++GV   GE V+LVREPNN YD+NAIRVDN+ G ++
Sbjct:  126 YTGVVRVGEHVDLVREPNNEYDRNAIRVDNIRGAKI 161
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: A0A550CYY9_9AGAR (SNF2 family N-terminal domain-containing protein n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CYY9_9AGAR)

HSP 1 Score: 53.1 bits (126), Expect = 4.600e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            ++G+   GE V L+REPNNRYD+NAIRV N+ G+QV
Sbjct:  175 YTGLVGAGEEVQLIREPNNRYDRNAIRVSNIAGSQV 210
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: D8QC03_SCHCM (Uncharacterized protein n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8QC03_SCHCM)

HSP 1 Score: 53.1 bits (126), Expect = 4.600e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            ++G+   GE V L+REPNNRYD+NAIRV N+ G+QV
Sbjct:  138 YTGLVGAGEEVQLIREPNNRYDRNAIRVSNIAGSQV 173
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BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Match: A0A7S1DN32_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DN32_HEMAN)

HSP 1 Score: 52.8 bits (125), Expect = 6.350e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV 108
            + G+ H GE+  LVREP N+YD+NAIRVDN+   QV
Sbjct:  161 YGGLLHEGEYAELVREPRNQYDRNAIRVDNMMAQQV 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24850.6748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X6P3Y0_PORUM7.100e-1169.44HIRAN domain-containing protein n=1 Tax=Porphyra u... [more]
D7G848_ECTSI6.450e-1077.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
R1F415_EMIHU4.220e-969.44Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7R9Y7S4_9VIRI1.070e-866.67Hypothetical protein n=2 Tax=Prasinoderma colonial... [more]
A0A830HVA9_9CHLO9.610e-863.89Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A835Z8N6_9STRA1.790e-770.59SNF2 family N-terminal domain-containing protein n... [more]
A0A7S2P3P1_9STRA3.360e-761.11Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A550CYY9_9AGAR4.600e-761.11SNF2 family N-terminal domain-containing protein n... [more]
D8QC03_SCHCM4.600e-761.11Uncharacterized protein n=1 Tax=Schizophyllum comm... [more]
A0A7S1DN32_HEMAN6.350e-758.33Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24850contigH-paniculata_contig24850:1024..1134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7G848
Preferred nameHLTF
KEGG koko:K15711
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016462,GO:0016567,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.2824721-CDS-H-paniculata_contig24850:1023..11341622929726.2824721-CDS-H-paniculata_contig24850:1023..1134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24850 1024..1134 +
1691480984.4094162-CDS-H-paniculata_contig24850:1023..11341691480984.4094162-CDS-H-paniculata_contig24850:1023..1134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24850 1024..1134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24850.6748.1prot_H-paniculata_contig24850.6748.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24850 1024..1134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24850.6748.1

>prot_H-paniculata_contig24850.6748.1 ID=prot_H-paniculata_contig24850.6748.1|Name=mRNA_H-paniculata_contig24850.6748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
FSGVAHRGEFVNLVREPNNRYDKNAIRVDNLTGTQV*
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mRNA from alignment at H-paniculata_contig24850:1024..1134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24850.6748.1 ID=mRNA_H-paniculata_contig24850.6748.1|Name=mRNA_H-paniculata_contig24850.6748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig24850:1024..1134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAGCGGCGTGGCACACCGGGGAGAGTTCGTCAACTTGGTGCGAGAACC
CAACAACCGCTACGACAAGAACGCTATACGTGTGGACAACCTCACCGGCA
CTCAGGTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig24850:1024..1134+

>mRNA_H-paniculata_contig24850.6748.1 ID=mRNA_H-paniculata_contig24850.6748.1|Name=mRNA_H-paniculata_contig24850.6748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig24850:1024..1134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAGCGGCGTGGCACACCGGGGAGAGTTCGTCAACTTGGTGCGAGAACC
CAACAACCGCTACGACAAGAACGCTATACGTGTGGACAACCTCACCGGCA
CTCAGGTATAATTCAGCGGCGTGGCACACCGGGGAGAGTTCGTCAACTTG
GTGCGAGAACCCAACAACCGCTACGACAAGAACGCTATACGTGTGGACAA
CCTCACCGGCACTCAGGTATAA
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