mRNA_H-paniculata_contig24844.6747.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24844.6747.1
Unique NamemRNA_H-paniculata_contig24844.6747.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24844.6747.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.230e-23
Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:   13 QDIAEMCEDFRKKLAATESQLSAVVRSRLDGVKRSRDLIEDSATQISKLHGQFAKMEE 186
            +DIAEMC DFRKKL ATESQLS+VVRSRLDGVKR+RDLI+D+A+QISKLHGQFAKMEE
Sbjct:   37 EDIAEMCADFRKKLTATESQLSSVVRSRLDGVKRARDLIDDNASQISKLHGQFAKMEE 94
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BLAST of mRNA_H-paniculata_contig24844.6747.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.120e-12
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   25 EMCEDFRKKLAATESQLSAVVRSRLDGVKRSRDLIEDSATQISKLHGQFAKME 183
            EM  ++R+KL A E QLS+VVRSRLDGVKR+RDLI  SA  I +LH QF KME
Sbjct:    5 EMQTEYRRKLMAMEGQLSSVVRSRLDGVKRARDLISQSAAHIGELHNQFGKME 57
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BLAST of mRNA_H-paniculata_contig24844.6747.1 vs. uniprot
Match: W7TFT7_9STRA (Exocyst complex component Sec6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFT7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.760e-6
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   16 DIAEMCEDFRKKLAATESQLSAVVRSRLDGVKRSRDLIEDSATQISKLHGQFAKMEE 186
            D+ E+  D++KKL++ E QLS +V+ +LDGVKRS D+I+ +  Q+  + G+F  M E
Sbjct:   69 DLPELRNDYKKKLSSLELQLSGMVQVKLDGVKRSMDVIQTANDQMVAVRGEFEGMYE 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24844.6747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5L8_ECTSI1.230e-2386.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNU2_9STRA2.120e-1266.04Exocyst complex component Sec6-domain-containing p... [more]
W7TFT7_9STRA3.760e-643.86Exocyst complex component Sec6 n=2 Tax=Monodopsida... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24844contigH-paniculata_contig24844:121..309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1e-17
Seed eggNOG ortholog2880.D7G5L8
Preferred nameExoc3l2
KEGG koko:K06110,ko:K19988
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.exocyst localization
EggNOG OGsCOG5173@1,KOG2286@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size189
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.2161372-CDS-H-paniculata_contig24844:120..2821622929726.2161372-CDS-H-paniculata_contig24844:120..282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24844 121..282 -
1691480984.379498-CDS-H-paniculata_contig24844:120..2821691480984.379498-CDS-H-paniculata_contig24844:120..282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24844 121..282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929726.2319765-UTR-H-paniculata_contig24844:282..3091622929726.2319765-UTR-H-paniculata_contig24844:282..309Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24844 283..309 -
1691480984.3946729-UTR-H-paniculata_contig24844:282..3091691480984.3946729-UTR-H-paniculata_contig24844:282..309Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24844 283..309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24844.6747.1prot_H-paniculata_contig24844.6747.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24844 121..282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24844.6747.1

>prot_H-paniculata_contig24844.6747.1 ID=prot_H-paniculata_contig24844.6747.1|Name=mRNA_H-paniculata_contig24844.6747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MCEDFRKKLAATESQLSAVVRSRLDGVKRSRDLIEDSATQISKLHGQFAK
MEE*
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mRNA from alignment at H-paniculata_contig24844:121..309-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24844.6747.1 ID=mRNA_H-paniculata_contig24844.6747.1|Name=mRNA_H-paniculata_contig24844.6747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig24844:121..309- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAACGAAAATCAGGACATTGCGGAGATGTGCGAGGACTTCAGGAAGAA
GCTGGCGGCGACCGAGAGTCAGCTGTCGGCCGTTGTACGGTCTCGACTGG
ACGGAGTGAAACGGTCGCGGGACCTGATCGAAGACAGCGCAACACAGATC
TCGAAGCTTCACGGGCAGTTCGCTAAAATGGAGGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig24844:121..309-

>mRNA_H-paniculata_contig24844.6747.1 ID=mRNA_H-paniculata_contig24844.6747.1|Name=mRNA_H-paniculata_contig24844.6747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig24844:121..309- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGAGGACTTCAGGAAGAAGCTGGCGGCGACCGAGAGTCAGCTGTC
GGCCGTTGTACGGTCTCGACTGGACGGAGTGAAACGGTCGCGGGACCTGA
TCGAAGACAGCGCAACACAGATCTCGAAGCTTCACGGGCAGTTCGCTAAA
ATGGAGGAGTAAATGTGCGAGGACTTCAGGAAGAAGCTGGCGGCGACCGA
GAGTCAGCTGTCGGCCGTTGTACGGTCTCGACTGGACGGAGTGAAACGGT
CGCGGGACCTGATCGAAGACAGCGCAACACAGATCTCGAAGCTTCACGGG
CAGTTCGCTAAAATGGAGGAGTAA
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