mRNA_H-paniculata_contig24839.6744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24839.6744.1
Unique NamemRNA_H-paniculata_contig24839.6744.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: D7FIQ5_ECTSI (POT1 protection of telomeres 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ5_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 7.840e-47
Identity = 103/198 (52.02%), Postives = 127/198 (64.14%), Query Frame = 1 
Query:   10 RLTYAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLCLPGVCSWLLIRKKQVARQVFQKVSPPRRWTENFSGGXXXXXXXNSRASGLEDDLDPDADPQSQHSGPDAGGGEEDRVLPTEEWEVVSSSTNYTMDEVDCDR 603
            + +YAY+ L ++     K NV+GVVCSF H     G+DLT S++LLDESCP SD+A PCNFF  T   +PAP+MVGDI+R+HRAK+Q+YRGR QLL   G  +WL+IRKK+  R+ +QK   P       SG XXXXXXX                  S  SGPDAGGGE D VLP  +WEV SSS NYT+ +VD DR
Sbjct:  224 KASYAYTTLDSIRVQEEKTNVYGVVCSFTHRHQSRGRDLTNSVSLLDESCPQSDDAVPCNFFSSTLKGLPAPLMVGDIVRLHRAKVQEYRGRPQLLAAGGA-AWLVIRKKKAMRETYQKC--PIGGISPASGDXXXXXXXXXXXXXX----------XSPPSGPDAGGGEADAVLPATDWEVQSSSANYTLSQVDQDR 408
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: A0A6H5JCK4_9PHAE (Telo_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK4_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.600e-46
Identity = 105/202 (51.98%), Postives = 130/202 (64.36%), Query Frame = 1 
Query:    1 GGR-RLTYAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLCLPGVCSWLLIRKKQVARQVFQKVSPPRRWTENFSGGXXXXXXXNSRASGLEDDLDPDADPQSQHSGPDAGGGEEDRVLPTEEWEVVSSSTNYTMDEVDCDR 603
            GGR + +YAY+ L ++     K NV+GVVCSF H     G+DLT S++LLDESCP SD A PCNFF  T   +PAP+MVGDI+R+HRAK+Q+YRGR QLL   G  +WL+IRKK+  R+ +QK   P     + SG XXXXXXX                  S  SGPDAGGGE D +LP  +WEV SSS NYT+ +VD DR
Sbjct:  205 GGRAKASYAYTALDSIRVQEEKTNVYGVVCSFTHRHQSRGRDLTNSVSLLDESCPQSDGAVPCNFFSSTLKGLPAPLMVGDIVRLHRAKVQEYRGRPQLLAAGGA-AWLVIRKKKAMRETYQKC--PIGGISSASGXXXXXXXXXXXXXXX----------XSPPSGPDAGGGEVDAILPATDWEVQSSSANYTLSQVDQDR 393
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: A0A6A3ZSE3_9STRA (Telo_bind domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZSE3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.570e-12
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:   19 YAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLCLPGVCSWLLIRKK 339
            Y YS LA L   N+  +++GVV +   P+   G+D  +++++ DESCP    A   N F PT   MP    VGDIIR H+ KIQ Y+ + Q L LP     L++R++
Sbjct:  195 YRYSSLAELVDGNA--DIYGVVVNVTLPKKTSGRDFCMTVSVTDESCPTRAEAIQINIFYPTVAQMPKIKYVGDIIRFHKIKIQQYQDKIQGLSLPRGSRHLVLREQ 299
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: A0A0W8BHD3_PHYNI (Protection of telomeres protein 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BHD3_PHYNI)

HSP 1 Score: 74.7 bits (182), Expect = 3.490e-12
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:   19 YAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLCLPGVCSWLLIRKKQVARQVFQKVSPPRRWT 390
            Y YS L+ L   +   +++GVV +   P+   G+D  +++++ DESCP    A   N F PT + +P    VGDIIR H+ KIQ Y+ R Q L L      L++R+K  A    ++V+    WT
Sbjct:   64 YRYSPLSEL--VDGFADIYGVVVNMTLPKKTSGRDFCMTVSVTDESCPTRAAAIQVNIFYPTIEKIPKIKFVGDIIRFHKVKIQQYQDRIQGLSLSRATRHLVLREK--ANGSLEQVTNSDTWT 183
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: W2Q538_PHYPN (Telo_bind domain-containing protein n=65 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Q538_PHYPN)

HSP 1 Score: 74.7 bits (182), Expect = 3.920e-12
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:   19 YAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLCLPGVCSWLLIRKKQVARQVFQKVSPPRRWT 390
            Y YS L+ L   +   +++GVV +   P+   G+D  +++++ DESCP    A   N F PT + +P    VGDIIR H+ KIQ Y+ R Q L L      L++R+K  A    ++V+    WT
Sbjct:  211 YRYSPLSEL--VDGFADIYGVVVNMTLPKKTSGRDFCMTVSVTDESCPTRAAAIQVNIFYPTIEKIPKIKFVGDIIRFHKVKIQQYQDRIQGLSLSRATRHLVLREK--ANGSLEQVTNSDTWT 330
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: A0A024FXU0_9STRA (Telo_bind domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FXU0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.350e-12
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   16 TYAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLC 300
            TY Y+ L++L  ++   NV GVV +   PR   GKD+ + +++ DESCP   +A     F  T + MP  + VGD+IR HR KIQ Y GR Q +C
Sbjct:  883 TYVYTNLSDL--SSGLANVFGVVVNMVLPRKSAGKDIHMHVHITDESCPKRQDALLVLVFYRTLEQMPRVLYVGDVIRFHRLKIQQYDGRLQGVC 975
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: K3W7D4_GLOUD (Telo_bind domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7D4_GLOUD)

HSP 1 Score: 73.9 bits (180), Expect = 7.290e-12
Identity = 41/125 (32.80%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:   19 YAYSKLANL-PGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLCLPGVCSWLLIRKKQVARQVFQKVSPPRRWT 390
            Y Y+ L +L PG   K +++GVV +F  P+   G D ++++N++DESCP  + A     F  + + MP  + VGDIIR H+  I  Y G  Q +C      +L++R+K+      ++++    WT
Sbjct:  218 YMYTCLGDLIPG---KADLYGVVVNFSLPKRTRGTDYSMTVNIVDESCPRREGAIQIMVFQSSLERMPRLLYVGDIIRFHKLTINKYNGNLQGVCSSQFTRYLVLREKENDPNELEQLTCSESWT 339
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: A0A0P1AB36_PLAHL (Predicted telomere binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB36_PLAHL)

HSP 1 Score: 68.2 bits (165), Expect = 6.940e-10
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:   19 YAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLCLPGVCSWLLIRKK 339
            Y YS L+ L   +   +++GV  +   P+   G+D  ++++L DES P    A   N F PT  AMP    VGDIIR H+ KIQ ++ R Q L L     +L++R++
Sbjct:  207 YRYSCLSEL--VDGYADIYGVAVNMTLPKKTSGRDFCMTVSLTDESRPTRAEAIHINIFYPTIAAMPKIKYVGDIIRFHKVKIQQFQNRIQGLSLHRATRFLVLREQ 311
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: A0A5D6XZC2_9STRA (Telo_bind domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZC2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.950e-9
Identity = 44/147 (29.93%), Postives = 70/147 (47.62%), Query Frame = 1 
Query:   19 YAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLCLPGVCSWLLIRKKQVARQVFQKVSPPRRWTENFSGGXXXXXXXNSRASGLEDD 459
            Y Y+ L +L     K  V+GVV +   P+   G D +++++++DESCP   +A     F P  + MP  + VGD+IR HR +++ Y    Q +C P     L+IR+     ++ Q       WT + S         +    GL DD
Sbjct:  994 YKYTCLGDL--VCGKAFVYGVVVNMSLPKRTRGSDYSMTVHVVDESCPQRCHALQVVIFFPKTELMPKVLYVGDVIRFHRLEVKRYLNNLQGVCHPKFTRHLVIREDPQTGELQQHTCSDT-WTFDDSDAARVREILHWSRQGLRDD 1137
[Close]
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Match: A0A329T5R6_9STRA (Telo_bind domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T5R6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.170e-9
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:   19 YAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLDESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQ 291
            Y YS L+ L   +   +++GV+ +   P+   G+D  +++++ DESCP    A   N F P+   MP    VGDIIR H+ KIQ Y+ R Q
Sbjct:  129 YRYSPLSEL--VDGYADIYGVIINVTLPKKTSGRDFCMTVSVTDESCPTRAAAIQINIFYPSIAKMPKIKYVGDIIRFHKVKIQQYQDRIQ 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24839.6744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIQ5_ECTSI7.840e-4752.02POT1 protection of telomeres 1 homolog n=1 Tax=Ect... [more]
A0A6H5JCK4_9PHAE1.600e-4651.98Telo_bind domain-containing protein n=1 Tax=Ectoca... [more]
A0A6A3ZSE3_9STRA1.570e-1239.25Telo_bind domain-containing protein n=7 Tax=Phytop... [more]
A0A0W8BHD3_PHYNI3.490e-1235.48Protection of telomeres protein 1 n=1 Tax=Phytopht... [more]
W2Q538_PHYPN3.920e-1235.48Telo_bind domain-containing protein n=65 Tax=Phyto... [more]
A0A024FXU0_9STRA4.350e-1242.11Telo_bind domain-containing protein n=1 Tax=Albugo... [more]
K3W7D4_GLOUD7.290e-1232.80Telo_bind domain-containing protein n=1 Tax=Globis... [more]
A0A0P1AB36_PLAHL6.940e-1036.45Predicted telomere binding protein n=1 Tax=Plasmop... [more]
A0A5D6XZC2_9STRA1.950e-929.93Telo_bind domain-containing protein n=1 Tax=Pythiu... [more]
A0A329T5R6_9STRA4.170e-937.36Telo_bind domain-containing protein n=1 Tax=Phytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24839contigH-paniculata_contig24839:351..2547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue1.3e-41
Seed eggNOG ortholog2880.D7FIQ5
Preferred namePOT1
KEGG koko:K10406,ko:K11109,ko:K22128
KEGG TC1.A.75.1
KEGG ModuleM00424
Hectar predicted targeting categorymitochondrion
GOsGO:0000217,GO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003723,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005724,GO:0006139,GO:0006259,GO:0006278,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010521,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010833,GO:0016043,GO:0016233,GO:0017151,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031933,GO:0031974,GO:0031981,GO:0032200,GO:0032202,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032211,GO:0032212,GO:0032356,GO:0032357,GO:0032392,GO:0032508,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042162,GO:0042592,GO:0043047,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045184,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051095,GO:0051096,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051348,GO:0051641,GO:0051972,GO:0051973,GO:0051974,GO:0060249,GO:0060255,GO:0060382,GO:0060383,GO:0061820,GO:0061821,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072594,GO:0080090,GO:0090304,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098772,GO:0098847,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1904356,GO:1904357,GO:1904358,GO:1905462,GO:1905464,GO:1905773,GO:1905774,GO:1905776,GO:1990955,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.positive regulation of DNA strand elongation
EggNOG OGsKOG4757@1,KOG4757@2759
Ec32 ortholog descriptionPOT1 protection of telomeres 1 homolog
Ec32 orthologEc-27_000660.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000,ko03032,ko04131,ko04812
Exons2
Model size606
Cds size606
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929725.8800406-CDS-H-paniculata_contig24839:350..6921622929725.8800406-CDS-H-paniculata_contig24839:350..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24839 351..692 -
1691480984.2251472-CDS-H-paniculata_contig24839:350..6921691480984.2251472-CDS-H-paniculata_contig24839:350..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24839 351..692 -
1622929725.8960516-CDS-H-paniculata_contig24839:2283..25471622929725.8960516-CDS-H-paniculata_contig24839:2283..2547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24839 2284..2547 -
1691480984.2351565-CDS-H-paniculata_contig24839:2283..25471691480984.2351565-CDS-H-paniculata_contig24839:2283..2547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24839 2284..2547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24839.6744.1prot_H-paniculata_contig24839.6744.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24839 351..2547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24839.6744.1

>prot_H-paniculata_contig24839.6744.1 ID=prot_H-paniculata_contig24839.6744.1|Name=mRNA_H-paniculata_contig24839.6744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
GGRRLTYAYSKLANLPGANSKVNVHGVVCSFGHPRSCMGKDLTISMNLLD
ESCPISDNAAPCNFFVPTRDAMPAPVMVGDIIRIHRAKIQDYRGRKQLLC
LPGVCSWLLIRKKQVARQVFQKVSPPRRWTENFSGGGGGGGGGNSRASGL
EDDLDPDADPQSQHSGPDAGGGEEDRVLPTEEWEVVSSSTNYTMDEVDCD
R*
back to top

mRNA from alignment at H-paniculata_contig24839:351..2547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24839.6744.1 ID=mRNA_H-paniculata_contig24839.6744.1|Name=mRNA_H-paniculata_contig24839.6744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2197bp|location=Sequence derived from alignment at H-paniculata_contig24839:351..2547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGAAGAAGGCTAACGTACGCGTACTCGAAGTTGGCCAACCTGCCGGG
AGCAAACTCGAAAGTCAACGTCCACGGCGTGGTGTGTTCGTTCGGGCATC
CCCGCTCGTGCATGGGCAAGGACCTGACGATCTCGATGAACCTGCTGGAC
GAATCCTGTCCCATTTCTGATAACGCGGCGCCCTGCAACTTCTTCGTGCC
GACGCGTGACGCCATGCCGGCGCCCGTCATGGTCGGAGATATTATCCGAA
TCCACCGGGCAAAGGTGGGTTATGTTCATTGGAAAATATGGAGAGGGGGG
GCGAGGGGGGCGAGGGGCGTACCCATCTTTTGTATGCCGCCGTTGTTTTA
CTTACCGTCAACCTACTACATGACCTCGGCAGAGGGGAGCTTTGGTCATG
TTGGAGCGATTTCCGACGGCAAATCGTTCTTTCCTAAGTTGCCAAATGTG
ACTCAAAAATGTTTCAACTATTTCAATCGTCACATGTCCAGCCCAGTTTT
CTACGTTGCCAAATGTGAGCTCAAAACATGTTTCACCCAACGTTTTTATT
TCCGGGGGGGGGGGGGGGGGGGGGGGGGTTACTGTGGACAATGTTGGATT
TTGTGTTCGAATGCTCAAAGATTAAATGTGCAGAATTCATGATACGCTTA
AGAACGCCGCCGCTTATAAGGGAACAGGTAGCGGACCCCCGGGCAGAAAT
AGAAATAGGATCCCTAACCTTAATCCCACACATTCATCATCTAGACCTTA
ATAGCGACAACACCCTATTTAGTACAGCCCCCTAGCAAGGACAAGTTCAT
CAATTGGACAGACAGGCATCAGTATCGACAACATGATAAAAACGGTTCGA
TATATGTAAGTACGAACACAAGAAATACTCCCAAATACGTCATCAGAATT
GGACGTACAGTCAAAGTCAATTTTGTAGTTGTGAGTGATGACTAATTCCA
CATGAAGAAAATATTAAATAGGGGGGAGAGATGGACCCGACACTTGTTTG
TGTTGTTTCGCGTGCATAAGATCTTCGACACTTGTCCTACCTCCAGCATT
GAATTTCGTCCAAGCTTAGCATCAGCACTGTTCAACGGATGCCACCAGAA
ATAGATATCGCCACAACGATAGCAGGATCGGAATATTAAATACCCGCATT
TGTACCCTGTGTATGTCAATACTAGCAAGTCAATGATACTGCGTGTAGCT
CTCAGCTAAAGCCACGCGACTTACCGTGAAGTTTGCTGGCATGAACGGTG
GACTAAGGAGAGACGAAAATCGAATCCTAATATCGGTATTTTGATGTCTA
TAAATACAGCATTTCAAGGCTACAAAAAAGGCACCCGCTGTCGGCTATAT
CTCCGTGTGTCATTTTTTTTCGTGTGCGTTGTTGTGCTGCACGTAGTTAT
TTTGTTCGTCTTCCAAGGTTGTTCGTAGATATAGCCCTCCTCCAAGGTTG
TTCGTGGAAATGGTAAGCTCGATGGTGCTTCTGCCATCGGCAATAAAGAA
ACGGTTATATGTATTTTCGAATGTATTCGTGCCTCTTTCCTATCGTAACA
TGTATTTTTATCCCTTCCTCCCTCCCCCCCATTCGAATTCACGTGGCGAA
TAACCTAATAACTGCGGCATAAAAAACTATGTTCCGCCTCTTATTGATCT
TTTTATTGTTGGTACGTGTACACTACTGAAGTTTGACGTCCGCTTCATAG
CTTCAATATGGGTACGACGGGGTTATTGTAGGAACGTTTGAGTTTAGTTA
TAACTGTGGCAAGGGAATTGACTTATTAATGAAAATTCCGGTAGGTGAGC
TCCCCTCCCGCCGCCGTCGCCGTCGCCGTCGCCGCCCCCAATAACCCAAA
AACAGATTCAGGACTACAGGGGCCGCAAACAATTGCTGTGCTTGCCAGGG
GTGTGTTCGTGGCTCCTCATCCGCAAGAAGCAAGTGGCACGCCAAGTTTT
CCAGAAGGTATCCCCTCCGAGGCGGTGGACTGAAAATTTCAGCGGCGGCG
GCGGCGGGGGGGGAGGGGGGAACAGCCGGGCTAGTGGACTGGAGGATGAC
TTGGACCCCGATGCCGATCCGCAGTCGCAGCATTCGGGTCCGGATGCGGG
TGGGGGCGAGGAGGATCGCGTGTTGCCGACGGAAGAGTGGGAAGTGGTGT
CTTCCTCGACTAATTACACCATGGACGAAGTCGATTGCGACAGGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig24839:351..2547-

>mRNA_H-paniculata_contig24839.6744.1 ID=mRNA_H-paniculata_contig24839.6744.1|Name=mRNA_H-paniculata_contig24839.6744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig24839:351..2547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGAAGAAGGCTAACGTACGCGTACTCGAAGTTGGCCAACCTGCCGGG
AGCAAACTCGAAAGTCAACGTCCACGGCGTGGTGTGTTCGTTCGGGCATC
CCCGCTCGTGCATGGGCAAGGACCTGACGATCTCGATGAACCTGCTGGAC
GAATCCTGTCCCATTTCTGATAACGCGGCGCCCTGCAACTTCTTCGTGCC
GACGCGTGACGCCATGCCGGCGCCCGTCATGGTCGGAGATATTATCCGAA
TCCACCGGGCAAAGGGTGGAAGAAGGCTAACGTACGCGTACTCGAAGTTG
GCCAACCTGCCGGGAGCAAACTCGAAAGTCAACGTCCACGGCGTGGTGTG
TTCGTTCGGGCATCCCCGCTCGTGCATGGGCAAGGACCTGACGATCTCGA
TGAACCTGCTGGACGAATCCTGTCCCATTTCTGATAACGCGGCGCCCTGC
AACTTCTTCGTGCCGACGCGTGACGCCATGCCGGCGCCCGTCATGGTCGG
AGATATTATCCGAATCCACCGGGCAAAGATTCAGGACTACAGGGGCCGCA
AACAATTGCTGTGCTTGCCAGGGGTGTGTTCGTGGCTCCTCATCCGCAAG
AAGCAAGTGGCACGCCAAGTTTTCCAGAAGGTATCCCCTCCGAGGCGGTG
GACTGAAAATTTCAGCGGCGGCGGCGGCGGGGGGGGAGGGGGGAACAGCC
GGGCTAGTGGACTGGAGGATGACTTGGACCCCGATGCCGATCCGCAGTCG
CAGCATTCGGGTCCGGATGCGGGTGGGGGCGAGGAGGATCGCGTGTTGCC
GACGGAAGAGTGGGAAGTGGTGTCTTCCTCGACTAATTACACCATGGACG
AAGTCGATTGCGACAGGTAGATTCAGGACTACAGGGGCCGCAAACAATTG
CTGTGCTTGCCAGGGGTGTGTTCGTGGCTCCTCATCCGCAAGAAGCAAGT
GGCACGCCAAGTTTTCCAGAAGGTATCCCCTCCGAGGCGGTGGACTGAAA
ATTTCAGCGGCGGCGGCGGCGGGGGGGGAGGGGGGAACAGCCGGGCTAGT
GGACTGGAGGATGACTTGGACCCCGATGCCGATCCGCAGTCGCAGCATTC
GGGTCCGGATGCGGGTGGGGGCGAGGAGGATCGCGTGTTGCCGACGGAAG
AGTGGGAAGTGGTGTCTTCCTCGACTAATTACACCATGGACGAAGTCGAT
TGCGACAGGTAG
back to top