prot_H-paniculata_contig24830.6743.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24830.6743.1
Unique Nameprot_H-paniculata_contig24830.6743.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length126
Homology
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A6H5JKT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 6.040e-23
Identity = 44/126 (34.92%), Postives = 77/126 (61.11%), Query Frame = 0
Query:    1 VTDTEEPPVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            + D E     + + ++  +  +W +A+  EFEGL     +   +    G NV++ARW++ WK D  G + K EARL+A GF Q+H+VD+L  F+PT  ASS+++++A+A + D   +  +++QAF+
Sbjct:  122 IQDVESESGSYQEARQSKYSTIWGKAMSAEFEGLLRAGTFALAEKAPLGCNVINARWVYKWKADETGKIVKAEARLVAEGFKQKHVVDYLGTFSPTANASSIRLLVALACKYDLEFFHFEIEQAFV 247          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A699UG59_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699UG59_TANCI)

HSP 1 Score: 92.0 bits (227), Expect = 4.000e-21
Identity = 42/112 (37.50%), Postives = 72/112 (64.29%), Query Frame = 0
Query:   15 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            K+ +  + W EA++VE + +   N W  + ++ KG   +S +W+F  K +A GN+ K +ARL+A+G+IQQH + F EVFAP     ++++++A+A  N W +  LD+K AF+
Sbjct:   39 KEASSDQKWIEAMKVELDSINRNNTWE-LTTLPKGHKAISLKWVFKTKKNANGNIIKHKARLVAKGYIQQHGIYFKEVFAPVSRTETIRLLLAIAANNKWEVHHLDIKAAFL 149          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A5B7B5N1_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B5N1_DAVIN)

HSP 1 Score: 90.1 bits (222), Expect = 1.800e-20
Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 0
Query:   11 FSDIKKLTHKKL-----WNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            FSD   +T K+      W +A+  E E +E  N W   + + KG N +  +W++  K+   G V K +ARL+A+G+ Q+  VD+ EVFAP     ++++VIA+A +N W ++Q+DVK AF+
Sbjct:   28 FSDCDPVTFKEAVKESKWRKAMDTEIEAIERNNTWELTE-LPKGQNTIGVKWVYKTKLKKTGEVDKYKARLVAKGYKQEFGVDYKEVFAPVARHDTIRLVIALAAQNSWLIFQMDVKSAFL 147          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A2U1P6C5_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P6C5_ARTAN)

HSP 1 Score: 95.5 bits (236), Expect = 2.130e-20
Identity = 43/112 (38.39%), Postives = 72/112 (64.29%), Query Frame = 0
Query:   15 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            K+ +  + W EA++VE + +   N W  + ++ KG   +  +W+F  K DA GN+ K +ARL+A+G+IQ+H +DF EVFAP     ++++++A+A  N W +  LDVK AF+
Sbjct:  164 KEASTDQKWIEAMKVELDSINRNNTWE-LTTLPKGHKAIGLKWVFKTKKDANGNIVKHKARLVAKGYIQEHGIDFEEVFAPVARMETIRLLLAIAANNKWEVHHLDVKSAFL 274          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A2U1LZW0_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LZW0_ARTAN)

HSP 1 Score: 95.5 bits (236), Expect = 2.230e-20
Identity = 43/112 (38.39%), Postives = 72/112 (64.29%), Query Frame = 0
Query:   15 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            K+ +  + W EA++VE + +   N W  + ++ KG   +  +W+F  K DA GN+ K +ARL+A+G+IQ+H +DF EVFAP     ++++++A+A  N W +  LDVK AF+
Sbjct:  563 KEASTDQKWIEAMKVELDSINRNNTWE-LTTLPKGHKAIGLKWVFKTKKDANGNIVKHKARLVAKGYIQEHGIDFEEVFAPVARMETIRLLLAIAANNKWEVHHLDVKSAFL 673          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A699PHI9_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699PHI9_TANCI)

HSP 1 Score: 91.3 bits (225), Expect = 2.980e-20
Identity = 41/112 (36.61%), Postives = 71/112 (63.39%), Query Frame = 0
Query:   15 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            K+ ++ + W EA++VE + +   N W  + ++  G   +S +W+F  K D  GN+ K +ARL+A+G+I +H +DF EVFAP     ++++++A+A  N W +  LDVK AF+
Sbjct:    9 KEASNDQKWIEAMKVELDFINRNNTWE-LTTLPTGHKAISLKWVFKTKKDENGNIIKHKARLVAKGYIHEHGIDFEEVFAPVARMKTIRLILAIAANNKWEVHHLDVKSAFL 119          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A5N6LYV3_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LYV3_9ASTR)

HSP 1 Score: 90.9 bits (224), Expect = 4.100e-20
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 0
Query:    4 TEEPPVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            TE  P+ F   ++ T  K W++A++ E   +E    W   D +  G   +  +W+F  K DA G +TK +ARL+A+G+IQQH VDF EVFAP     +V++++ +A +  W +  LDVK AF+
Sbjct:   37 TEGEPLNF---REATGNKEWDDAMKSEIASIERNKTWVLTD-IPLGHRPIGLKWVFKIKRDATGTITKHKARLVAKGYIQQHGVDFDEVFAPVARLETVRLLLDLATQRGWEVHHLDVKSAFL 155          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A6L2KMI8_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KMI8_TANCI)

HSP 1 Score: 92.8 bits (229), Expect = 5.290e-20
Identity = 42/112 (37.50%), Postives = 72/112 (64.29%), Query Frame = 0
Query:   15 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            K+ +  + W EA++VE + +   N W  + ++ KG   +  +W+F  K DA GN+ K +ARL+A+G+IQ+H +DF EVFAP     ++++++A+A  N W +  L+VK AF+
Sbjct:  207 KEASSDQKWIEAMKVELDSINRNNTWE-LTTLPKGHKAIGLKWVFKTKKDANGNIIKHKARLLAKGYIQEHGIDFEEVFAPVARMETIRLLLAIAANNKWEVRHLNVKSAFL 317          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A699I2V2_TANCI (Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699I2V2_TANCI)

HSP 1 Score: 94.4 bits (233), Expect = 5.580e-20
Identity = 42/112 (37.50%), Postives = 72/112 (64.29%), Query Frame = 0
Query:   15 KKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            K+ +  + W +A++VE + +   N W  + ++ KG   +  +W+F  K DA GN+ K +ARL+A+G+IQ+H +DF EVFAP     ++++++A+A  N W +  LDVK AF+
Sbjct:  551 KEASSDQKWIKAIKVELDSINRNNTWE-LTTLPKGQKAIGLKWVFKTKKDANGNIIKHKARLVAKGYIQEHGIDFKEVFAPVARMETIRLLLAIAANNKWEVHHLDVKFAFL 661          
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Match: A0A392M0Q4_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M0Q4_9FABA)

HSP 1 Score: 94.0 bits (232), Expect = 7.480e-20
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    8 PVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGSNVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAASSVKMVIAVAVENDWGMWQLDVKQAFI 126
            PV F D  K     +W +A+  E + +E    W  VD   K + +   +W+F  K++  G ++K +ARL+ARGF+Q+H +D+ EVFAP     +V++V+A+A +N W M+ LDVK AF+
Sbjct:  220 PVNFKDALK---SNVWRKAMEEELKSIEKNQTWKLVDLPDKKAKI-DVKWVFKVKLNPDGTISKHKARLVARGFLQKHGIDYNEVFAPVARIETVRLVVALACKNRWKMYHLDVKSAFL 334          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24830.6743.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKT7_9PHAE6.040e-2334.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A699UG59_TANCI4.000e-2137.50Ribonuclease H-like domain, reverse transcriptase,... [more]
A0A5B7B5N1_DAVIN1.800e-2037.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2U1P6C5_ARTAN2.130e-2038.39Ribonuclease H-like domain, Reverse transcriptase,... [more]
A0A2U1LZW0_ARTAN2.230e-2038.39Ribonuclease H-like domain, Reverse transcriptase,... [more]
A0A699PHI9_TANCI2.980e-2036.61Ribonuclease H-like domain, reverse transcriptase,... [more]
A0A5N6LYV3_9ASTR4.100e-2038.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2KMI8_TANCI5.290e-2037.50Ribonuclease H-like domain, reverse transcriptase,... [more]
A0A699I2V2_TANCI5.580e-2037.50Ribonuclease H-like domain, reverse transcriptase,... [more]
A0A392M0Q4_9FABA7.480e-2038.66Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 39..126
e-value: 6.0E-18
score: 65.4
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 18..125
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 18..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24830contigH-paniculata_contig24830:3354..3731 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24830.6743.1mRNA_H-paniculata_contig24830.6743.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24830 3354..3731 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24830.6743.1 ID=prot_H-paniculata_contig24830.6743.1|Name=mRNA_H-paniculata_contig24830.6743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
VTDTEEPPVRFSDIKKLTHKKLWNEAVRVEFEGLENLNAWTYVDSVRKGS
NVVSARWLFAWKIDAQGNVTKPEARLIARGFIQQHIVDFLEVFAPTVAAS
SVKMVIAVAVENDWGMWQLDVKQAFI
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like