mRNA_H-paniculata_contig2483.6742.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2483.6742.1 vs. uniprot
Match: D8LGM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM7_ECTSI) HSP 1 Score: 612 bits (1577), Expect = 6.860e-196 Identity = 471/1246 (37.80%), Postives = 611/1246 (49.04%), Query Frame = 1
Query: 1 RYFGALERRHDYDLYCVLAGQFWPLEPEAFRAVDRPGKKLFHEIDGPASKIVMMWRTWYPIRKRRKHRGCVVFQSVWRGYRVRQRWRPIVRMRIKNGRRSYLRPCFESWYRSAKVHRLARRHLFEMQGRWMGICFTVWVELTTKRASPFDKYRRKLQRAARILKNVSAYRAFRSW-------------------------QKYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRDSAVITIQRHARGFRVRTRYVATRIIITSFNHSVAGRKARRLVRRALAASRRHTTAELLQVQRDAEIADGLAREQRRLARLQNEMNSALLSTRRTVTR----GWKKRRLRIPSTLCGGGGGGTRELRQEIKAVRDEWAAAETVARKKEGGDGGGNDHGNRSGSE----------------------GVLLHKNGLSLGGVLESLNCCGGGRSKKGRNMASANVKTRKTTRPLAVGINNSTEQKAQQLANV-TPVGDVGDAAAVEREARSRIMSREVGLTREIIMHDFNARDPPLLQCCAPGCYRTFTCDSHYIEHW-AGSSA---------------------------------------------TREESNANGDIGIST--------------TPAAQRATTAVYLPS------AEVGHPTLGGEEMARFHLIVAN-------LEGGGENPSGGSRIS----AGFGFKLVSAYIVRMWGHGQAYNMLLFWGAVESWRRWVST-EPHYLREAINLRRKYLDPDAPREVTLPAETLRGLRCLLDEVTEELVREEDNEVESVRRGGELHEEGLIGEERKEQDQVGKHTNGDLNAAVAAL--SDQGGRSRESGVGTINGTPDSLAVTTLKETQSPFLAATDPKIHQPSRIKQNVVGHNIERYSNKWPRA-ANEAARVKDAKTHVIK--ASTPPKKELLVSSAIARA------------------------------LRPTTFDEAQWLALAHLCRVVGPGFWTADLCRRYNFLRRQKFQKRQETIYEIAKEERRQRVTSEAAEIKARWRRQREHKNSIIVETALDVVVDVVCEAALRSAIARVEQIASQELDDLREMHMLSEAATVEAVWAVGPDFLEEMLSHEIEEFCLEQEELVLMAEEDGWVPPELRPEYPFHDPYN--KSAMVVAIDFMAIPGGAKTAMTAAETIQCAWRQRAAQVEARRRLAKVFIKRRGV-EGGVYYENSVTGISQWERPLIAYRLFPGSTW 3234
R+ A ERRHDYDLYCVLAGQFWPLE +AFRA RPG+KLF EI+ PA I+ MWRT++P RK RK +GC+ FQS+WRGYRVR+RW P++R+R+++GRRS +RPCF SW R A+V ARR E++GRW CF W E T A+ + +RKL+RA R L+N++AYR+FRSW Q Y +R+ SA +TIQRHARG+ R RY AT+ II FN +A R+AR+ +R+ALAA+ R T ELLQ DAEI G+ARE++RLA+LQ E+ +A + RR VT+ GW L I GGG ELR+E +AV++EW A E G N S G+LL K + + GG + K P + G+ AQ A P G A EREA RI++RE L REII+HDF+ R+PP L CCAPGC RTFT D HY+ HW AG++A T ++ + IG T PA Q+ + + AE GH GG+ +A FHL+VA+ S I+ AG GF LVSAY+ R+WGHGQAYN LLF AV++WRR +P + A LRR++L P APRE +LPAET R L LD + ++++ D G E ++ G G+ GD A A L +D+ R RE+ V L+ D + R N +I S PRA A A+ K ++ + + A+ P+++ SA A LRPT+FDEAQ+ ALAHL RVVGPGFW +DL R L +Q+ ++R+E EI + ERR R+ +EAAE A LRSA+A E + +QEL+ RE M++EAATVEAVW V P LE +L EI+ E EE M+ ED WVPPE+R D N +AM IDF +IPGG + A AA TIQ AWRQR+A+VEARRRLA+V++KR G G V+YEN+VTG SQWERPLIAYRLFP S W
Sbjct: 135 RFLEAWERRHDYDLYCVLAGQFWPLEAQAFRACSRPGRKLFLEIEAPARVIMRMWRTYWPFRKDRKRKGCLGFQSLWRGYRVRKRWHPVIRLRVRHGRRSIIRPCFSSWARLARVQSWARRRFEEIEGRWERSCFHAWAEWTANLAA---ERQRKLERAGRTLRNIAAYRSFRSWKAVRSVGVAVALVRLDFEASFRCTSQSYTRTARQAHRLYARAVGGTSMAAWVQYVGMAKRQRRQKSAAVTIQRHARGYLARGRYRATQTIIRGFNRLMAARRARQFLRQALAAAHRMATEELLQSGCDAEITVGIAREEKRLAKLQKEIKAADAAVRRAVTKRLTGGW----LTIRPAFRGGG-----ELRREARAVQEEWKALEAAQIAAATTTAPGTTLANASVERDSKDXXXXXXXLGGTLPKTVFPGLLLRKG--KPKDITRAARPDGGXXXXXXXXXXRPTTEAEKKAAPASGGVRGGRTGGAQAPAKACVPPSSRGGTAEAEREAWRRILAREKLLAREIIVHDFDVRNPPPLTCCAPGCGRTFTQDEHYLAHWDAGAAAAAARKLLVRDDPDALLSRPSSPPFSGTPQRQDRGCQKSPLRPTMPTDDQQSVAPSIGSITGSTSTVAWQQQQLRAPAEQQQLRHGFPAAEEAEAEAEAGHSERGGKGIASFHLVVADKADIRRGXXXXXXXXXXXSEIANHEEAGAGFDLVSAYVTRVWGHGQAYNTLLFIDAVDAWRRCCPVADPAFAEGAAELRREFLCPGAPREASLPAETRRDLMRTLDTLPDDVL---DGTAGGWDDGDESGDDDAGG---------GEEVGGDGRAPDAELPFADEK-RPRETRVDL-------------------DLSDGDEGGRRSIRTAGNAATRDISGGSG-GPRAIAKSKAQTKFSRNKIARPSATLQPQQQRRPVSAPGGAXXXXXXXXXXXXXXXXXXXXXXXXARNPHGLRPTSFDEAQFQALAHLSRVVGPGFWASDLGRLAASLHQQELKRRREAAREIVRLERRGRLANEAAE------------------------------ALLRSAVAGAEVLETQELEVAREEDMVAEAATVEAVWVVEPPLLENLLDLEIDALISEGEEREFMSIEDDWVPPEVR----LADFRNGLSTAMACVIDFNSIPGGEEGAHRAATTIQLAWRQRSARVEARRRLAQVYVKRAGAGPGEVFYENTVTGESQWERPLIAYRLFPYSNW 1299
BLAST of mRNA_H-paniculata_contig2483.6742.1 vs. uniprot
Match: A0A6H5L2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U9_9PHAE) HSP 1 Score: 600 bits (1546), Expect = 1.950e-188 Identity = 466/1251 (37.25%), Postives = 613/1251 (49.00%), Query Frame = 1
Query: 1 RYFGALERRHDYDLYCVLAGQFWPLEPEAFRAVDRPGKKLFHEIDGPASKIVMMWRTWYPIRKRRKHRGCVVFQSVWRGYRVRQRWRPIVRMRIKNGRRSYLRPCFESWYRSAKVHRLARRHLFEMQGRWMGICFTVWVELTTKRASPFDKYRRKLQRAARILKNVSAYRAFRS----------------------------------------------WQKYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRDSAVITIQRHARGFRVRTRYVATRIIITSFNHSVAGRKARRLVRRALAASRRHTTAELLQVQRDAEIADGLAREQRRLARLQNEMNSALLSTRRTVTR----GWKKRRLRIPSTLCGGGGGGTRELRQEIKAVRDEWAAAETV------ARKKEGGDGGGNDHGNRSGSEGVLLHKNGLSLGGVLESL----NCCGGGRSKKGRNMASANVK---------TRKTTRPLAVGINNSTEQKAQQLANVT-PVGDVGDAAAVEREARSRIMSREVGLTREIIMHDFNARDPPLLQCCAPGCYRTFTCDSHYIEHW--AGSS-ATRE--------------------ESNANGDIG----------------------ISTT--------------------------PAAQRATTAVYLPSAEVGHPTLGGEEMARFHLIVANL----EGGGENPSGGS-RISAGFGFKLVSAYIVRMWGHGQAYNMLLFWGAVESWRRWVST-EPHYLREAINLRRKYLDPDAPREVTLPAETLRGLRCLLDEVTEELVREEDNEVESVRRGGELHEEGLIGEERKEQDQVGKHTNGDLNAAVAAL-----------------SDQGGRSRESGVGTI--------NGTPDSLAVTTLKETQSPFLAATDPKIHQPSRIKQNVVGHNIERYSNKWPRAANEAARVKDAKTHVIKASTPPKKELLVSSAIARALRPTTFDEAQWLALAHLCRVVGPGFWTADLCRRYNFLRRQKFQKRQETIYEIAKEERRQRVTSEAAEIKARWRRQREHKNSIIVETALDVVVDVVCEAALRSAIARVEQIASQELDDLREMHMLSEAATVEAVWAVGPDFLEEMLSHEIEEFCLEQEELVLMAEEDGWVPPELRPEYPFHDPYNKSAMVVAIDFMAIPGGAKTAMTAAETIQCAWRQRAAQVEARRRLAKVFIKRRGVEGG-VYYENSVTGISQWERPLIAYRLFPGSTW 3234
R+ A ERRHDYDLYCVLAGQFWPLE FRA RPG+KLF +I+ PA + RK +GC+ FQS+WRGYRVR+RW P++R+R+++GRRS +RPCF SW R A+V ARR E++GRW CF W E T A+ + +RKL+RA L+N++AYR+F WQ Y+ + + SA +TIQRHARG+ R+RY AT+ II FNH +A R+AR+ VR+ALAA+ R T ELLQ DAEI G+ARE++RLA+LQ E+ +A + RR VT+ GW L I GGG ELR+E +AV++EW A E A G N R +G LGG G GR K +R P + + AQ A P G A EREA RI++RE L REII+HDF+ R+PP L CCAPGC RTFT + HY+ HW AG++ A R+ E+ D G +STT PAA+ A AE GHP GG+ +A FHL+VA+ G S + AG GF LVSAY+ R+WGHGQAYN LLF AV++WRR +P + A LRR++L P APRE +LPAET R L LD + ++++ D G E ++ +G G+ GD A A L D+GGR S G +G P + A + + S A QP + ++ V ++ A P LRPT+FDEAQ+ ALAHL RVVGPGF+ +DL RR L +++ ++R+E ++IA+ ERR R+ +EAAE++ + R R+ + I ++ALDV V EA LRSA+A E + +QEL+ RE M++EAATVEAVW V P LE++L EI+ E EE M+ ED WVPPE+R F + + +AM IDF +IPGG + A AA TIQ AWRQR+A+VEARRRLA+V++KR G G V+YEN+VTG SQWERPLIAYRLFP S+W
Sbjct: 408 RFLEAWERRHDYDLYCVLAGQFWPLEAHVFRACSRPGRKLFLDIEAPA--------------RDRKRKGCLGFQSLWRGYRVRKRWHPVIRLRVRHGRRSIIRPCFSSWARLARVQSWARRRFEEIEGRWERSCFHAWAEWTANLAA---ERQRKLERAGSTLRNIAAYRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIASLFLPFWNTFWQSYIRTTRQAHRLYARAVGGTSMAAWVQYVGMAKRQRGQKSAAVTIQRHARGYLARSRYRATQTIIHGFNHLMAARRARQFVRQALAAAHRKATEELLQSGYDAEITAGIAREEKRLAKLQKEIKAADAAVRRAVTKRLTGGW----LTIRPASRGGG-----ELRREARAVQEEWKALEAAQTASAAATATVPGTTPANASVERDSKDGXXXX---XXLGGAWPKTVFPGRLLGKGRRKDXXXXXXXXXXXXXXXXXXXSRPKAAPAGGEVRGGRTEGAQAPAKAAVPPSSRGGTAEAEREAWRRILARERRLAREIIVHDFDVRNPPPLTCCAPGCGRTFTQNEHYLSHWDAAGAADAARKLLLRHVPDPLLSRPSSPPLFETPKRQDRGCQKSPSRPTMPTDDQQSVAPSTVSTTGSTSTIAWRQQQLRAPVEQQQLRHGCPAAEEAKL-----EAEAGHPERGGKGIASFHLVVADKADVRRGXXXXXSEVTDHEEAGAGFDLVSAYVTRVWGHGQAYNTLLFVDAVDAWRRCCPVADPAFAEGAAELRREFLCPGAPREASLPAETRRDLMRTLDTLPDDVL---DGTAGGRGDGDEGGDDDAVG---------GEEVGGDGRAPDAELPFTDEKRRPETRVDLSDGDEGGRRSISTAGNAATRDSSGGSGGPRATAKSNARTKFSRNKIARPSATRQPQQQRRPV---SVPGXXXXXXXXXXXXXXXXXXXXXXXXARDPD------------GLRPTSFDEAQFQALAHLSRVVGPGFFASDLGRRAAALHQEELKRRREAAHDIARLERRSRLANEAAEVRRQLSRGRDVEIESIAQSALDVASGSVVEALLRSAVAGAEVLETQELEVAREEDMVAEAATVEAVWVVEPPLLEDLLDLEIDALISEGEEREHMSLEDDWVPPEVRLAN-FRNGLS-TAMACVIDFNSIPGGEEGAHRAANTIQLAWRQRSARVEARRRLAQVYVKRAGAAPGEVFYENTVTGESQWERPLIAYRLFPYSSW 1595
BLAST of mRNA_H-paniculata_contig2483.6742.1 vs. uniprot
Match: A0A482S9F4_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9F4_9ARCH) HSP 1 Score: 82.8 bits (203), Expect = 1.780e-12 Identity = 40/119 (33.61%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 4 YFGALERRHDYDLYCVLAGQFWPLEPEAFRAVDRPGKKLFHEIDGPASKIVMMWRTWYPIRKRRKHRGCVVFQSVWRGYRVRQRWRPIVRMRIKNGRRSYLRPCFESWYRSAKVHRLAR 360
Y AL R DY+ Y +LA ++ P+ E + RPGK+ + ++ A K+ ++W +Y + K R++R C + Q WR + V ++ PI+++R+K G+R+Y CF W R + R R
Sbjct: 170 YHDALLRLKDYERYYILANRYGPMSEEEYFIDARPGKRYYTKVVKGAIKLQLLWDRYYAMAKLRRYRACRMVQKHWRRFIVYRKLHPIIKLRMKFGKRTYFYFCFALWKRYNHLCRTIR 288 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2483.6742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2483.6742.1 >prot_H-paniculata_contig2483.6742.1 ID=prot_H-paniculata_contig2483.6742.1|Name=mRNA_H-paniculata_contig2483.6742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1079bp RYFGALERRHDYDLYCVLAGQFWPLEPEAFRAVDRPGKKLFHEIDGPASKback to top mRNA from alignment at H-paniculata_contig2483:9356..20338- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2483.6742.1 ID=mRNA_H-paniculata_contig2483.6742.1|Name=mRNA_H-paniculata_contig2483.6742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10983bp|location=Sequence derived from alignment at H-paniculata_contig2483:9356..20338- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2483:9356..20338- >mRNA_H-paniculata_contig2483.6742.1 ID=mRNA_H-paniculata_contig2483.6742.1|Name=mRNA_H-paniculata_contig2483.6742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6474bp|location=Sequence derived from alignment at H-paniculata_contig2483:9356..20338- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |