mRNA_H-paniculata_contig11035.674.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11035.674.1
Unique NamemRNA_H-paniculata_contig11035.674.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: A0A6H5KE93_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE93_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.870e-10
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 2 
Query:   26 LLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLFMCYNTLSDS 220
            LL+LHN  RC+H   PL +   VAATA++YA+V+AS   CG+    +S+ LGEN+F+C  + S S
Sbjct:   87 LLELHNAARCMHATGPLEFAEPVAATAKTYADVLASESMCGSAEAAHSTGLGENVFVCAASSSFS 151
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: D8LQY8_ECTSI (SCP-domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY8_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-9
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   26 LLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLFMC 199
            LL+LHN  RC+H   PL +   VAATA++YA+++AS   CG+    +S+ LGEN+F+C
Sbjct:  104 LLELHNAARCMHATGPLEFAEPVAATAKTYADLLASESMCGSAETAHSTGLGENVFVC 161
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: V9I1C0_WHEAT (Pathogenesis-related protein 1 n=5 Tax=Triticinae TaxID=1648030 RepID=V9I1C0_WHEAT)

HSP 1 Score: 54.3 bits (129), Expect = 4.490e-7
Identity = 33/64 (51.56%), Postives = 38/64 (59.38%), Query Frame = 2 
Query:    2 GADDMYASLLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLF 193
            GADDM    L+ HN+VR   G  P++WD IVAA AQSYAE    R +C   L     P GENLF
Sbjct:   26 GADDM----LNAHNEVRAAVGVGPVTWDPIVAAYAQSYAE--KRRADCQLLLSPEVRPYGENLF 83
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: A0A3S3MDQ4_9MAGN (Pathogenesis-related protein PRB1-3-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MDQ4_9MAGN)

HSP 1 Score: 52.8 bits (125), Expect = 1.660e-6
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 2 
Query:   29 LDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLFMCY 202
            LD HN  R   G +P++WD+ VAA AQSYA    S  +C   LVH+  P GENLF  Y
Sbjct:   32 LDAHNSARSQVGVEPMTWDTTVAAYAQSYANQRIS--DC--QLVHSGGPYGENLFWGY 85
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: UPI0001CBC309 (low-density lipoprotein receptor-related protein 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBC309)

HSP 1 Score: 53.1 bits (126), Expect = 3.650e-6
Identity = 29/65 (44.62%), Postives = 36/65 (55.38%), Query Frame = 2 
Query:    2 GADDMYASLLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLFM 196
            G  D    LL+ HN  RC+HG +PL+WDS +A T Q  A+  A R      L H+S   GENL M
Sbjct:  291 GTKDFEDQLLEAHNYFRCLHGVEPLTWDSSLAQTGQLVAQDNADRGM----LKHSSYGYGENLAM 351
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: A0A8I6YBG7_HORVV (SCP domain-containing protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6YBG7_HORVV)

HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 2 
Query:    5 ADDMYASLLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLF 193
            A +  A  + LHN  R + GA P++WD+ VAA AQSYA   + + +C  +L H++   GENLF
Sbjct:   29 AQNAPADFVSLHNTARLVVGAGPVTWDTTVAAYAQSYAN--SRKASC--NLAHSNGTYGENLF 87
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: UPI0003F08702 (cell wall protein PRY3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08702)

HSP 1 Score: 50.4 bits (119), Expect = 1.730e-5
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 2 
Query:   26 LLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLFM 196
            LL+ HN  RC+HG +PL+WDS +A T Q  A+  A R      L H+S   GENL M
Sbjct:   52 LLEAHNYFRCLHGVEPLTWDSSLAQTGQLVAQDNADRGM----LKHSSYGYGENLAM 104
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: A0A8I6Y8D7_HORVV (SCP domain-containing protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6Y8D7_HORVV)

HSP 1 Score: 48.5 bits (114), Expect = 3.050e-5
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 2 
Query:   26 LLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLF 193
            +++ HN+VR   G  P++WD IVAA AQS+AE    R +C   L     P GEN+F
Sbjct:   31 MVNAHNEVRAAVGVGPVTWDPIVAAYAQSFAE--KRRADCQPILSPEGGPYGENIF 84
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: A0A8I7BBA9_HORVV (SCP domain-containing protein n=7 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I7BBA9_HORVV)

HSP 1 Score: 48.5 bits (114), Expect = 7.040e-5
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 2 
Query:   26 LLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLF 193
            +++ HN+VR   G  P++WD IVAA AQS+AE    R +C   L     P GEN+F
Sbjct:   31 MVNAHNEVRAAVGVGPVTWDPIVAAYAQSFAE--KRRADCQPILSPEGGPYGENIF 84
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BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Match: A0A444CFQ1_ENSVE (SCP domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444CFQ1_ENSVE)

HSP 1 Score: 48.1 bits (113), Expect = 9.360e-5
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 2 
Query:   23 SLLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVHNSSPLGENLF 193
            + ++ HN  R   G  P+SWD +VAA    YA++ A+R      LVH+  P GENLF
Sbjct:   30 AFVNAHNSARAAVGVGPVSWDPVVAA----YAQIYANRHIGDCLLVHSGGPYGENLF 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11035.674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KE93_9PHAE2.870e-1047.69SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQY8_ECTSI1.240e-948.28SCP-domain containing protein n=1 Tax=Ectocarpus s... [more]
V9I1C0_WHEAT4.490e-751.56Pathogenesis-related protein 1 n=5 Tax=Triticinae ... [more]
A0A3S3MDQ4_9MAGN1.660e-650.00Pathogenesis-related protein PRB1-3-like protein n... [more]
UPI0001CBC3093.650e-644.62low-density lipoprotein receptor-related protein 1... [more]
A0A8I6YBG7_HORVV1.350e-542.86SCP domain-containing protein n=1 Tax=Hordeum vulg... [more]
UPI0003F087021.730e-547.37cell wall protein PRY3-like n=1 Tax=Saccoglossus k... [more]
A0A8I6Y8D7_HORVV3.050e-544.64SCP domain-containing protein n=1 Tax=Hordeum vulg... [more]
A0A8I7BBA9_HORVV7.040e-544.64SCP domain-containing protein n=7 Tax=Hordeum vulg... [more]
A0A444CFQ1_ENSVE9.360e-542.11SCP domain-containing protein n=1 Tax=Ensete ventr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11035contigH-paniculata_contig11035:991..3049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue5.5e-10
Seed eggNOG ortholog2880.D8LED4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E9TD@1,2SG44@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size262
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11035.674.1prot_H-paniculata_contig11035.674.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11035 991..3036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.4384134-CDS-H-paniculata_contig11035:990..11431622928811.4384134-CDS-H-paniculata_contig11035:990..1143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11035 991..1143 -
1691480629.1197448-CDS-H-paniculata_contig11035:990..11431691480629.1197448-CDS-H-paniculata_contig11035:990..1143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11035 991..1143 -
1622928811.4527185-CDS-H-paniculata_contig11035:2701..27591622928811.4527185-CDS-H-paniculata_contig11035:2701..2759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11035 2702..2759 -
1691480629.1372192-CDS-H-paniculata_contig11035:2701..27591691480629.1372192-CDS-H-paniculata_contig11035:2701..2759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11035 2702..2759 -
1622928811.4687512-CDS-H-paniculata_contig11035:2998..30361622928811.4687512-CDS-H-paniculata_contig11035:2998..3036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11035 2999..3036 -
1691480629.1445043-CDS-H-paniculata_contig11035:2998..30361691480629.1445043-CDS-H-paniculata_contig11035:2998..3036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11035 2999..3036 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.4802384-UTR-H-paniculata_contig11035:3036..30491622928811.4802384-UTR-H-paniculata_contig11035:3036..3049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11035 3037..3049 -
1691480629.1524196-UTR-H-paniculata_contig11035:3036..30491691480629.1524196-UTR-H-paniculata_contig11035:3036..3049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11035 3037..3049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11035.674.1

>prot_H-paniculata_contig11035.674.1 ID=prot_H-paniculata_contig11035.674.1|Name=mRNA_H-paniculata_contig11035.674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MYASLLDLHNKVRCIHGADPLSWDSIVAATAQSYAEVMASRDNCGADLVH
NSSPLGENLFMCYNTLSDSCCTAALAMQWLCE*
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mRNA from alignment at H-paniculata_contig11035:991..3049-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11035.674.1 ID=mRNA_H-paniculata_contig11035.674.1|Name=mRNA_H-paniculata_contig11035.674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2059bp|location=Sequence derived from alignment at H-paniculata_contig11035:991..3049- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCTGACGACATGTATGCAAGCCTTCTTGACCTTCACAACAAAGTCA
GGTAGGTCACTCTACTAAATTTGCGCTGAGTAATGATGTTGACAAATTGG
CGTACCTACTGTATCAGTGGACTAGTAGACCAGTGGCATATGTACCCACC
TTCTTTTGATTAAAGAGAGAATAAAATGTAGGCTATTGCGCTTTTCTCTC
TAGTTACAACCATGTCTATTCGGTGATCTCTCACCCCCCCCGCCCCCCCC
CCTGTTGTGTCCGTGTTTTACCATGTGCTGTGCTACTAAGGTGTATTCAT
GGAGCGGATCCTTTGTCGTGGGATAGTATAGTAGCTGCAACTGCCCAGGT
ACGTACACACATAGTCAGGTAGCCATCGTCGAATAAGTCTGTTTTCATAC
TGTTTTCGACGTATGCTTGTGCCAGGGTCTCCTATTTCGTGATTTCATGG
GCGTCGTATTCCAACTCGTCCCAAGAGTGTAGTGTACTAATTTCGTCAGT
CAGTGTCGAAGTATTTGAAGGTTGCATTGTGTACCGCTTCCTGTCTCGGG
TTGAAGGCCGCGAACTCGAATACCAATCGCCAATCGCCTAACACAGCACT
GAAGACAAGGGAAAGGTGCCTGCAGTTCTTCTATTGGTCACCTTTTTTTA
AGGAGCGATCTGATTGGTAGCGAACAACCCTTGGTCGTCAAATGACGTCA
TATATGATGAAACGTTGCCCCATCTGAATAGTGTCCCATGTAACTGGATG
ATGTCACTCGTCAACGTCGGATCTTTTCTTCGATCAATCAGATGGCTCCT
TTCAACAGAGTTGACCCAATAGGAAAACTGCGCCCATTTTTTCCCTTTCT
CGCGAGCATACCTGTGTTTGTGATGATTGTTCTCGTGTCTGTGTTCAGCG
ATCACTTGCTACGCGGCAGGGTTTCCAACTACCGATATTACAACGAGAAA
GGACCCCCTCAAATCAACGCTTCTCGATATCCACCCCATCTGCCAACCAA
CCCAAACTCATCCATCCACCTACTCATTTCTTCACCTACCACTCATGACT
CCATGCCCACCATTATTAAGGATACATATAACCATAAATGGCGCTCTTGA
CTTATCAGTACCGATATTGGGCTCAAATTGGTACTTACCTTAACTGGCTT
AACTACCGCAGCACACGAAACCGTAGTCATTACGTCGTTTCGCTGATATT
CTCATAGTTCACCACCGTGCTGACTAACTAACGAGGATACGACACGGCGA
TGTATCAAGAATTTGCACGGGGGGGCCCCGCGTTGCATTCGAGTGACGGC
GTACTGATCCATGGCCTCGTTCTTATTTCATCAAATGAGAGTTTACCAGC
CATCGCTGCGTCGTAGTAATAGCTATCGCTGGAGCCATTCTGTACCCACT
GTCAATGATCGAGCGTGCTCTCCTTCGGTACAACTTCCTTCGCCCACTTA
TTATATTGGGTAGTTAGTCGTCATACCCACAAGGGAGTCATTGGCGGGGC
GCACGCAATGTACCACTTTACCACGATAGCGGGGCATTGAGGGTGGCATT
ACATTACATTACGTCAACTATTTTTCATTTCATTATGACCGTTGGGCCTG
CGAGATGTAGGCATCTTTAGTTTATATCATGTTTAAGGTTACAGTGTACA
CATGTGGTGAGGATCAGCGTAAGTAATCAATTTTGAGAACTCAACTTCCA
TGAGCACTTGTTGCATCTACTCCAGCATAGACTAATACCGTGCCCACAAG
CTCGACGGAGCTTTCAGGAATAATCAGACTCGATGCACGTAAAACGTGTG
GTGTGATATTCTGTGCAAACCGCGTTCCATCATAACACCCCGCCACATCT
CCATCCCTCCCCCCGTCGCCTGTTTGATTACCGATATTCGTACGTGATGT
GGGCAGAGTTACGCTGAGGTCATGGCGAGCCGCGACAACTGCGGTGCAGA
CTTGGTTCACAACAGCTCCCCACTCGGGGAGAACTTGTTCATGTGCTACA
ACACGCTTTCGGACAGTTGCTGCACTGCGGCCCTCGCCATGCAGTGGCTA
TGTGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11035:991..3049-

>mRNA_H-paniculata_contig11035.674.1 ID=mRNA_H-paniculata_contig11035.674.1|Name=mRNA_H-paniculata_contig11035.674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig11035:991..3049- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGCAAGCCTTCTTGACCTTCACAACAAAGTCAGATGTATGCAAGC
CTTCTTGACCTTCACAACAAAGTCAGGTGTATTCATGGAGCGGATCCTTT
GTCGTGGGATAGTATAGTAGCTGCAACTGCCCAGGTGTATTCATGGAGCG
GATCCTTTGTCGTGGGATAGTATAGTAGCTGCAACTGCCCAGAGTTACGC
TGAGGTCATGGCGAGCCGCGACAACTGCGGTGCAGACTTGGTTCACAACA
GCTCCCCACTCGGGGAGAACTTGTTCATGTGCTACAACACGCTTTCGGAC
AGTTGCTGCACTGCGGCCCTCGCCATGCAGTGGCTATGTGAGTAAAGTTA
CGCTGAGGTCATGGCGAGCCGCGACAACTGCGGTGCAGACTTGGTTCACA
ACAGCTCCCCACTCGGGGAGAACTTGTTCATGTGCTACAACACGCTTTCG
GACAGTTGCTGCACTGCGGCCCTCGCCATGCAGTGGCTATGTGAGTAA
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