mRNA_H-paniculata_contig24822.6740.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24822.6740.1
Unique NamemRNA_H-paniculata_contig24822.6740.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24822.6740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24822contigH-paniculata_contig24822:414..956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size543
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24822.6740.1prot_H-paniculata_contig24822.6740.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24822 435..749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929725.4319842-UTR-H-paniculata_contig24822:413..4341622929725.4319842-UTR-H-paniculata_contig24822:413..434Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24822 414..434 +
1691480984.0205984-UTR-H-paniculata_contig24822:413..4341691480984.0205984-UTR-H-paniculata_contig24822:413..434Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24822 414..434 +
1622929725.4707556-UTR-H-paniculata_contig24822:749..9561622929725.4707556-UTR-H-paniculata_contig24822:749..956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24822 750..956 +
1691480984.037358-UTR-H-paniculata_contig24822:749..9561691480984.037358-UTR-H-paniculata_contig24822:749..956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24822 750..956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929725.4477925-CDS-H-paniculata_contig24822:434..7491622929725.4477925-CDS-H-paniculata_contig24822:434..749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24822 435..749 +
1691480984.0289738-CDS-H-paniculata_contig24822:434..7491691480984.0289738-CDS-H-paniculata_contig24822:434..749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24822 435..749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24822.6740.1

>prot_H-paniculata_contig24822.6740.1 ID=prot_H-paniculata_contig24822.6740.1|Name=mRNA_H-paniculata_contig24822.6740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MDLRSNDRIAAQLAAFRSHLTIPQIGKFNSRRDWSESSLRSSCKSRNVRN
DGTCTRRRRVRSLGESGYTMTCALLYFFFSSAQATLSTIINCLYPRHSVP
ARSA*
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mRNA from alignment at H-paniculata_contig24822:414..956+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24822.6740.1 ID=mRNA_H-paniculata_contig24822.6740.1|Name=mRNA_H-paniculata_contig24822.6740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at H-paniculata_contig24822:414..956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCGACTTAGTAAACGAGGATGGATTTAAGGAGTAATGACAGAATAGC
GGCACAACTCGCGGCGTTTCGTAGTCACTTGACTATTCCTCAAATTGGGA
AATTTAATTCTAGAAGAGATTGGTCCGAAAGTTCTTTGAGAAGTTCCTGT
AAATCGCGGAACGTTAGGAACGATGGCACTTGTACGCGGAGGAGGCGTGT
ACGTAGCTTAGGAGAGAGCGGATACACCATGACGTGCGCCCTACTATATT
TTTTCTTCTCTAGCGCACAAGCGACACTTTCAACTATCATCAACTGTTTG
TATCCTCGGCACAGCGTGCCTGCTCGGTCAGCTTAACAACTACCAGCGCC
AGCCTTTGCAGCTGCCTGAGGGTGTATCATCAGATATTCTCAACACGCCA
AAACCTGCCAGACCTATGCAACTTCAAGCCTGCCGTTGGTCTTGGACGAT
TCGGTGGTTACTCTTGGCCTCATCTCCGCCAACCTAGGATTTACCCCGGG
GTGAGTTGATCCCGTCCGCCACGTAGAGGCGGTAACCATTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig24822:414..956+

>mRNA_H-paniculata_contig24822.6740.1 ID=mRNA_H-paniculata_contig24822.6740.1|Name=mRNA_H-paniculata_contig24822.6740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig24822:414..956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTTAAGGAGTAATGACAGAATAGCGGCACAACTCGCGGCGTTTCG
TAGTCACTTGACTATTCCTCAAATTGGGAAATTTAATTCTAGAAGAGATT
GGTCCGAAAGTTCTTTGAGAAGTTCCTGTAAATCGCGGAACGTTAGGAAC
GATGGCACTTGTACGCGGAGGAGGCGTGTACGTAGCTTAGGAGAGAGCGG
ATACACCATGACGTGCGCCCTACTATATTTTTTCTTCTCTAGCGCACAAG
CGACACTTTCAACTATCATCAACTGTTTGTATCCTCGGCACAGCGTGCCT
GCTCGGTCAGCTTAAATGGATTTAAGGAGTAATGACAGAATAGCGGCACA
ACTCGCGGCGTTTCGTAGTCACTTGACTATTCCTCAAATTGGGAAATTTA
ATTCTAGAAGAGATTGGTCCGAAAGTTCTTTGAGAAGTTCCTGTAAATCG
CGGAACGTTAGGAACGATGGCACTTGTACGCGGAGGAGGCGTGTACGTAG
CTTAGGAGAGAGCGGATACACCATGACGTGCGCCCTACTATATTTTTTCT
TCTCTAGCGCACAAGCGACACTTTCAACTATCATCAACTGTTTGTATCCT
CGGCACAGCGTGCCTGCTCGGTCAGCTTAA
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